PDB Chemical Component 3PA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3PA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1A |
C2A |
1.520 |
1.542 |
| C1A |
C5A |
1.523 |
1.549 |
| C1A |
H11 |
1.115 |
1.089 |
| C1A |
H21 |
1.115 |
1.090 |
| C2A |
C3A |
1.519 |
1.539 |
| C2A |
H12 |
1.116 |
1.090 |
| C2A |
H22 |
1.115 |
1.090 |
| C3A |
C4A |
1.518 |
1.541 |
| C3A |
C6A |
1.521 |
1.529 |
| C3A |
HC3 |
1.115 |
1.090 |
| C4A |
C5A |
1.521 |
1.549 |
| C4A |
H14 |
1.116 |
1.090 |
| C4A |
H24 |
1.114 |
1.090 |
| C5A |
H15 |
1.114 |
1.090 |
| C5A |
H25 |
1.115 |
1.090 |
| C6A |
C7A |
1.524 |
1.529 |
| C6A |
H16 |
1.115 |
1.090 |
| C6A |
H26 |
1.115 |
1.089 |
| C7A |
C8A |
1.511 |
1.507 |
| C7A |
H17 |
1.115 |
1.089 |
| C7A |
H27 |
1.115 |
1.090 |
| C8A |
O9A |
1.231 |
1.208 |
| C8A |
O10 |
1.353 |
1.342 |
| O10 |
H10 |
0.951 |
0.966 |
Bond Angles for 3PA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2A |
C1A |
C5A |
107.5 |
104.2 |
| C2A |
C1A |
H11 |
112.9 |
110.5 |
| C2A |
C1A |
H21 |
112.9 |
110.5 |
| C1A |
C2A |
C3A |
107.2 |
106.6 |
| C1A |
C2A |
H12 |
113.1 |
110.0 |
| C1A |
C2A |
H22 |
113.1 |
110.0 |
| C5A |
C1A |
H11 |
113.0 |
110.5 |
| C5A |
C1A |
H21 |
112.9 |
110.4 |
| C1A |
C5A |
C4A |
107.7 |
102.7 |
| C1A |
C5A |
H15 |
112.9 |
110.7 |
| C1A |
C5A |
H25 |
112.8 |
110.8 |
| H11 |
C1A |
H21 |
97.6 |
110.6 |
| C3A |
C2A |
H12 |
113.1 |
110.1 |
| C3A |
C2A |
H22 |
113.1 |
110.0 |
| C2A |
C3A |
C4A |
107.1 |
106.6 |
| C2A |
C3A |
C6A |
110.4 |
110.0 |
| C2A |
C3A |
HC3 |
110.7 |
109.9 |
| H12 |
C2A |
H22 |
97.3 |
110.0 |
| C4A |
C3A |
C6A |
110.2 |
110.1 |
| C4A |
C3A |
HC3 |
110.9 |
110.2 |
| C3A |
C4A |
C5A |
107.1 |
104.2 |
| C3A |
C4A |
H14 |
113.1 |
110.5 |
| C3A |
C4A |
H24 |
113.1 |
110.5 |
| C6A |
C3A |
HC3 |
107.5 |
110.0 |
| C3A |
C6A |
C7A |
110.6 |
109.5 |
| C3A |
C6A |
H16 |
111.8 |
109.5 |
| C3A |
C6A |
H26 |
111.8 |
109.5 |
| C5A |
C4A |
H14 |
113.1 |
110.5 |
| C5A |
C4A |
H24 |
113.1 |
110.5 |
| C4A |
C5A |
H15 |
112.9 |
110.8 |
| C4A |
C5A |
H25 |
112.9 |
110.8 |
| H14 |
C4A |
H24 |
97.3 |
110.5 |
| H15 |
C5A |
H25 |
97.6 |
110.8 |
| C7A |
C6A |
H16 |
111.7 |
109.4 |
| C7A |
C6A |
H26 |
111.8 |
109.5 |
| C6A |
C7A |
C8A |
112.4 |
109.5 |
| C6A |
C7A |
H17 |
111.1 |
109.4 |
| C6A |
C7A |
H27 |
111.1 |
109.5 |
| H16 |
C6A |
H26 |
98.6 |
109.4 |
| C8A |
C7A |
H17 |
111.1 |
109.5 |
| C8A |
C7A |
H27 |
111.1 |
109.4 |
| C7A |
C8A |
O9A |
121.1 |
119.9 |
| C7A |
C8A |
O10 |
114.7 |
120.1 |
| H17 |
C7A |
H27 |
99.3 |
109.4 |
| O9A |
C8A |
O10 |
124.2 |
119.9 |
| C8A |
O10 |
H10 |
114.7 |
120.1 |
Torsion Angles for 3PA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5A |
C1A |
C2A |
H11 |
234.7 |
241.3 |
| C5A |
C1A |
C2A |
H21 |
125.2 |
118.6 |
| C2A |
C1A |
C5A |
C4A |
360.0 |
322.1 |
| C2A |
C1A |
C5A |
H15 |
125.2 |
80.4 |
| C2A |
C1A |
C5A |
H25 |
234.7 |
203.7 |
| H11 |
C1A |
C2A |
H21 |
250.5 |
237.3 |
| C3A |
C2A |
C1A |
H12 |
234.7 |
119.4 |
| C3A |
C2A |
C1A |
H22 |
125.3 |
240.7 |
| C1A |
C2A |
C3A |
C4A |
18.3 |
360.0 |
| C1A |
C2A |
C3A |
C6A |
138.4 |
119.3 |
| C1A |
C2A |
C3A |
HC3 |
257.4 |
240.6 |
| H12 |
C2A |
C1A |
H22 |
250.6 |
121.4 |
| C2A |
C1A |
C5A |
H11 |
125.3 |
118.7 |
| C2A |
C1A |
C5A |
H21 |
234.8 |
241.4 |
| C5A |
C1A |
C2A |
C3A |
348.7 |
23.6 |
| C5A |
C1A |
C2A |
H12 |
114.0 |
264.2 |
| C5A |
C1A |
C2A |
H22 |
223.4 |
142.9 |
| H11 |
C1A |
C5A |
H21 |
109.5 |
122.7 |
| C3A |
C4A |
C5A |
C1A |
11.3 |
37.9 |
| C1A |
C5A |
C4A |
H14 |
246.1 |
279.2 |
| C1A |
C5A |
C4A |
H24 |
136.6 |
156.7 |
| C4A |
C5A |
C1A |
H15 |
234.8 |
241.7 |
| C4A |
C5A |
C1A |
H25 |
125.2 |
118.3 |
| H15 |
C5A |
C1A |
H25 |
250.5 |
236.7 |
| C2A |
C1A |
H11 |
C5A |
237.7 |
245.3 |
| C2A |
C1A |
H11 |
H21 |
118.8 |
122.7 |
| H11 |
C1A |
C2A |
C3A |
114.0 |
142.3 |
| H11 |
C1A |
C2A |
H12 |
239.3 |
22.9 |
| H11 |
C1A |
C2A |
H22 |
348.7 |
261.5 |
| C5A |
C1A |
H11 |
H21 |
241.1 |
237.4 |
| H11 |
C1A |
C5A |
C4A |
234.7 |
203.4 |
| H11 |
C1A |
C5A |
H15 |
359.9 |
321.8 |
| H11 |
C1A |
C5A |
H25 |
109.5 |
85.1 |
| C2A |
C1A |
H21 |
C5A |
122.3 |
114.7 |
| C2A |
C1A |
H21 |
H11 |
241.2 |
237.3 |
| H21 |
C1A |
C2A |
C3A |
223.5 |
265.0 |
| H21 |
C1A |
C2A |
H12 |
348.8 |
145.7 |
| H21 |
C1A |
C2A |
H22 |
98.2 |
24.3 |
| C5A |
C1A |
H21 |
H11 |
118.9 |
122.6 |
| H21 |
C1A |
C5A |
C4A |
125.2 |
80.7 |
| H21 |
C1A |
C5A |
H15 |
250.4 |
199.0 |
| H21 |
C1A |
C5A |
H25 |
359.9 |
322.4 |
| C3A |
C2A |
C1A |
C5A |
348.7 |
23.6 |
| C3A |
C2A |
C1A |
H11 |
114.0 |
142.3 |
| C3A |
C2A |
C1A |
H21 |
223.5 |
265.0 |
| C1A |
C2A |
C3A |
H12 |
125.3 |
240.7 |
| C1A |
C2A |
C3A |
H22 |
234.7 |
119.3 |
| H12 |
C2A |
C3A |
H22 |
109.4 |
238.6 |
| C4A |
C3A |
C2A |
C6A |
240.0 |
240.7 |
| C4A |
C3A |
C2A |
HC3 |
121.0 |
119.4 |
| C2A |
C3A |
C4A |
C5A |
341.7 |
336.4 |
| C2A |
C3A |
C4A |
H14 |
106.9 |
95.1 |
| C2A |
C3A |
C4A |
H24 |
216.4 |
217.7 |
| C6A |
C3A |
C2A |
HC3 |
241.0 |
238.7 |
| C2A |
C3A |
C6A |
C7A |
334.1 |
180.0 |
| C2A |
C3A |
C6A |
H16 |
99.3 |
60.0 |
| C2A |
C3A |
C6A |
H26 |
208.8 |
300.0 |
| H12 |
C2A |
C1A |
C5A |
114.0 |
264.2 |
| H12 |
C2A |
C1A |
H11 |
239.3 |
22.9 |
| H12 |
C2A |
C1A |
H21 |
348.8 |
145.7 |
| C1A |
C2A |
H12 |
C3A |
238.0 |
117.2 |
| C1A |
C2A |
H12 |
H22 |
119.0 |
238.6 |
| C3A |
C2A |
H12 |
H22 |
241.0 |
121.4 |
| H12 |
C2A |
C3A |
C4A |
253.1 |
119.3 |
| H12 |
C2A |
C3A |
C6A |
13.1 |
238.6 |
| H12 |
C2A |
C3A |
HC3 |
132.1 |
359.9 |
| H22 |
C2A |
C1A |
C5A |
223.4 |
142.9 |
| H22 |
C2A |
C1A |
H11 |
348.7 |
261.5 |
| H22 |
C2A |
C1A |
H21 |
98.2 |
24.3 |
| C1A |
C2A |
H22 |
C3A |
122.0 |
242.8 |
| C1A |
C2A |
H22 |
H12 |
241.0 |
121.4 |
| C3A |
C2A |
H22 |
H12 |
119.0 |
238.6 |
| H22 |
C2A |
C3A |
C4A |
143.7 |
240.7 |
| H22 |
C2A |
C3A |
C6A |
263.7 |
360.0 |
| H22 |
C2A |
C3A |
HC3 |
22.7 |
121.3 |
| C1A |
C5A |
C4A |
C3A |
11.3 |
37.9 |
| C4A |
C3A |
C2A |
H12 |
253.1 |
119.3 |
| C4A |
C3A |
C2A |
H22 |
143.7 |
240.7 |
| C2A |
C3A |
C4A |
C6A |
120.2 |
119.3 |
| C2A |
C3A |
C4A |
HC3 |
239.2 |
240.8 |
| C6A |
C3A |
C4A |
HC3 |
119.0 |
121.5 |
| C4A |
C3A |
C6A |
C7A |
92.2 |
297.1 |
| C4A |
C3A |
C6A |
H16 |
217.5 |
177.1 |
| C4A |
C3A |
C6A |
H26 |
327.0 |
57.2 |
| C5A |
C4A |
C3A |
H14 |
234.7 |
241.3 |
| C5A |
C4A |
C3A |
H24 |
125.3 |
118.7 |
| C3A |
C4A |
C5A |
H15 |
246.1 |
279.6 |
| C3A |
C4A |
C5A |
H25 |
136.6 |
156.3 |
| H14 |
C4A |
C3A |
H24 |
250.6 |
237.4 |
| C6A |
C3A |
C2A |
H12 |
13.1 |
238.6 |
| C6A |
C3A |
C2A |
H22 |
263.7 |
360.0 |
| C2A |
C3A |
C6A |
C4A |
241.9 |
242.9 |
| C2A |
C3A |
C6A |
HC3 |
120.9 |
121.3 |
| C4A |
C3A |
C6A |
HC3 |
239.0 |
238.4 |
| C6A |
C3A |
C4A |
C5A |
221.5 |
217.1 |
| C6A |
C3A |
C4A |
H14 |
346.7 |
335.8 |
| C6A |
C3A |
C4A |
H24 |
96.2 |
98.4 |
| C7A |
C6A |
C3A |
H16 |
234.8 |
120.0 |
| C7A |
C6A |
C3A |
H26 |
125.3 |
240.0 |
| C3A |
C6A |
C7A |
C8A |
155.3 |
180.0 |
| C3A |
C6A |
C7A |
H17 |
280.5 |
59.9 |
| C3A |
C6A |
C7A |
H27 |
30.0 |
300.0 |
| H16 |
C6A |
C3A |
H26 |
250.5 |
120.0 |
| HC3 |
C3A |
C2A |
H12 |
132.1 |
359.9 |
| HC3 |
C3A |
C2A |
H22 |
22.7 |
121.3 |
| C2A |
C3A |
HC3 |
C4A |
118.7 |
117.1 |
| C2A |
C3A |
HC3 |
C6A |
239.3 |
238.7 |
| C4A |
C3A |
HC3 |
C6A |
120.6 |
121.5 |
| HC3 |
C3A |
C4A |
C5A |
102.5 |
95.6 |
| HC3 |
C3A |
C4A |
H14 |
227.8 |
214.3 |
| HC3 |
C3A |
C4A |
H24 |
337.2 |
336.9 |
| HC3 |
C3A |
C6A |
C7A |
213.2 |
58.7 |
| HC3 |
C3A |
C6A |
H16 |
338.5 |
298.7 |
| HC3 |
C3A |
C6A |
H26 |
88.0 |
178.7 |
| C4A |
C5A |
C1A |
H11 |
234.7 |
203.4 |
| C4A |
C5A |
C1A |
H21 |
125.2 |
80.7 |
| C1A |
C5A |
C4A |
H15 |
125.3 |
118.3 |
| C1A |
C5A |
C4A |
H25 |
234.8 |
241.7 |
| C5A |
C4A |
C3A |
C6A |
221.5 |
217.1 |
| C5A |
C4A |
C3A |
HC3 |
102.5 |
95.6 |
| C3A |
C4A |
C5A |
H14 |
125.2 |
118.7 |
| C3A |
C4A |
C5A |
H24 |
234.7 |
241.3 |
| H14 |
C4A |
C5A |
H24 |
109.5 |
122.6 |
| H15 |
C5A |
C4A |
H25 |
109.5 |
123.3 |
| H14 |
C4A |
C3A |
C6A |
346.7 |
335.8 |
| H14 |
C4A |
C3A |
HC3 |
227.8 |
214.3 |
| C3A |
C4A |
H14 |
C5A |
238.1 |
245.2 |
| C3A |
C4A |
H14 |
H24 |
119.0 |
122.6 |
| C5A |
C4A |
H14 |
H24 |
241.0 |
237.4 |
| H14 |
C4A |
C5A |
H15 |
120.9 |
160.9 |
| H14 |
C4A |
C5A |
H25 |
11.3 |
37.6 |
| H24 |
C4A |
C3A |
C6A |
96.2 |
98.4 |
| H24 |
C4A |
C3A |
HC3 |
337.2 |
336.9 |
| C3A |
C4A |
H24 |
C5A |
122.0 |
114.8 |
| C3A |
C4A |
H24 |
H14 |
241.0 |
237.4 |
| C5A |
C4A |
H24 |
H14 |
119.0 |
122.6 |
| H24 |
C4A |
C5A |
H15 |
11.4 |
38.4 |
| H24 |
C4A |
C5A |
H25 |
261.8 |
275.0 |
| H15 |
C5A |
C1A |
H11 |
359.9 |
321.8 |
| H15 |
C5A |
C1A |
H21 |
250.4 |
199.0 |
| C1A |
C5A |
H15 |
C4A |
237.6 |
246.7 |
| C1A |
C5A |
H15 |
H25 |
118.8 |
123.3 |
| H15 |
C5A |
C4A |
H14 |
120.9 |
160.9 |
| H15 |
C5A |
C4A |
H24 |
11.4 |
38.4 |
| C4A |
C5A |
H15 |
H25 |
241.2 |
236.7 |
| H25 |
C5A |
C1A |
H11 |
109.5 |
85.1 |
| H25 |
C5A |
C1A |
H21 |
359.9 |
322.4 |
| C1A |
C5A |
H25 |
C4A |
122.4 |
113.3 |
| C1A |
C5A |
H25 |
H15 |
241.2 |
236.7 |
| H25 |
C5A |
C4A |
H14 |
11.3 |
37.6 |
| H25 |
C5A |
C4A |
H24 |
261.8 |
275.0 |
| C4A |
C5A |
H25 |
H15 |
118.8 |
123.4 |
| C7A |
C6A |
C3A |
HC3 |
213.2 |
58.7 |
| C3A |
C6A |
C7A |
H16 |
125.3 |
240.0 |
| C3A |
C6A |
C7A |
H26 |
234.7 |
120.0 |
| H16 |
C6A |
C7A |
H26 |
109.4 |
240.0 |
| C8A |
C7A |
C6A |
H17 |
234.8 |
120.1 |
| C8A |
C7A |
C6A |
H27 |
125.2 |
240.0 |
| C6A |
C7A |
C8A |
O9A |
292.1 |
360.0 |
| C6A |
C7A |
C8A |
O10 |
112.0 |
180.0 |
| H17 |
C7A |
C6A |
H27 |
250.4 |
119.9 |
| H16 |
C6A |
C3A |
HC3 |
338.5 |
298.7 |
| C3A |
C6A |
H16 |
C7A |
235.4 |
120.0 |
| C3A |
C6A |
H16 |
H26 |
117.7 |
240.0 |
| C7A |
C6A |
H16 |
H26 |
242.4 |
120.0 |
| H16 |
C6A |
C7A |
C8A |
30.0 |
300.0 |
| H16 |
C6A |
C7A |
H17 |
155.2 |
180.0 |
| H16 |
C6A |
C7A |
H27 |
264.8 |
60.0 |
| H26 |
C6A |
C3A |
HC3 |
88.0 |
178.7 |
| C3A |
C6A |
H26 |
C7A |
124.6 |
240.0 |
| C3A |
C6A |
H26 |
H16 |
242.2 |
120.0 |
| C7A |
C6A |
H26 |
H16 |
117.6 |
240.1 |
| H26 |
C6A |
C7A |
C8A |
280.6 |
60.0 |
| H26 |
C6A |
C7A |
H17 |
45.8 |
299.9 |
| H26 |
C6A |
C7A |
H27 |
155.3 |
180.0 |
| C8A |
C7A |
C6A |
H16 |
30.0 |
300.0 |
| C8A |
C7A |
C6A |
H26 |
280.6 |
60.0 |
| C6A |
C7A |
C8A |
H17 |
125.3 |
240.0 |
| C6A |
C7A |
C8A |
H27 |
234.7 |
120.0 |
| H17 |
C7A |
C8A |
H27 |
109.5 |
240.1 |
| O9A |
C8A |
C7A |
O10 |
180.1 |
180.0 |
| C7A |
C8A |
O10 |
H10 |
180.0 |
180.1 |
| H17 |
C7A |
C6A |
H16 |
155.2 |
180.0 |
| H17 |
C7A |
C6A |
H26 |
45.8 |
299.9 |
| C6A |
C7A |
H17 |
C8A |
234.0 |
120.1 |
| C6A |
C7A |
H17 |
H27 |
117.0 |
240.0 |
| C8A |
C7A |
H17 |
H27 |
243.0 |
119.9 |
| H17 |
C7A |
C8A |
O9A |
166.9 |
120.0 |
| H17 |
C7A |
C8A |
O10 |
346.8 |
300.1 |
| H27 |
C7A |
C6A |
H16 |
264.8 |
60.0 |
| H27 |
C7A |
C6A |
H26 |
155.3 |
180.0 |
| C6A |
C7A |
H27 |
C8A |
126.0 |
239.9 |
| C6A |
C7A |
H27 |
H17 |
242.9 |
119.9 |
| C8A |
C7A |
H27 |
H17 |
116.9 |
240.0 |
| H27 |
C7A |
C8A |
O9A |
57.4 |
240.0 |
| H27 |
C7A |
C8A |
O10 |
237.3 |
60.0 |
| O9A |
C8A |
C7A |
H17 |
166.9 |
120.0 |
| O9A |
C8A |
C7A |
H27 |
57.4 |
240.0 |
| C7A |
C8A |
O9A |
O10 |
179.9 |
180.0 |
| O9A |
C8A |
O10 |
H10 |
359.9 |
0.1 |
| O10 |
C8A |
C7A |
H17 |
346.8 |
300.1 |
| O10 |
C8A |
C7A |
H27 |
237.3 |
60.0 |
| C7A |
C8A |
O10 |
O9A |
180.1 |
180.0 |