PDB Chemical Component 3P5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3P5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
BR1 C2 1.879 1.890
C9 C2 1.406 1.382
C2 C3 1.402 1.388
C3 C4 1.391 1.387
C3 O54 1.395 1.359
C6 C4 1.401 1.382
C4 H4 1.080 1.081
C8 C6 1.399 1.383
C6 H6 1.080 1.080
C11 C8 1.528 1.508
C9 C8 1.402 1.382
C9 H9 1.079 1.079
C11 C14 1.558 1.530
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
C16 C14 1.553 1.526
C14 C24 1.529 1.531
C14 H14 1.100 1.090
O52 C16 1.421 1.429
C16 C18 1.525 1.526
C16 H16 1.100 1.090
N29 C18 1.489 1.469
C18 C20 1.538 1.530
C18 H18 1.100 1.091
C20 S23 1.787 1.817
C20 H20 1.100 1.090
C20 H20A 1.100 1.090
C24 S23 1.831 1.817
S23 O27 1.416 1.421
S23 O28 1.464 1.421
C24 H24 1.100 1.089
C24 H24A 1.100 1.091
N29 C31 1.474 1.469
N29 HN29 1.000 1.009
C31 C34 1.549 1.507
C31 H31 1.100 1.090
C31 H31A 1.101 1.090
C35 C34 1.415 1.383
C34 C42 1.399 1.382
C35 C37 1.416 1.382
C35 H35 1.080 1.080
C37 C44 1.543 1.507
C37 C38 1.401 1.382
C38 C40 1.397 1.383
C38 H38 1.080 1.080
C42 C40 1.399 1.382
C40 H40 1.080 1.080
C42 H42 1.080 1.080
C46 C44 1.524 1.530
C49 C44 1.526 1.530
C44 H44 1.100 1.090
C46 C49 1.525 1.530
C46 H46 1.100 1.090
C46 H46A 1.100 1.091
C49 H49 1.100 1.091
C49 H49A 1.100 1.090
O52 HO52 0.950 0.967
O54 HO54 0.950 0.967

Bond Angles for 3P5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
BR1 C2 C3 119.4 120.0
C2 C3 C4 119.5 119.9
C2 C3 O54 120.5 120.0
C4 C3 O54 120.1 120.1
C3 C4 H4 119.5 120.0
C3 O54 HO54 109.5 114.0
C6 C4 H4 119.6 120.0
C8 C6 H6 120.1 120.0
C14 C11 H11 109.3 109.5
C14 C11 H11A 109.2 109.5
C11 C14 C24 111.3 109.4
C11 C14 H14 108.7 109.4
H11 C11 H11A 109.7 109.5
C16 C14 C24 110.5 109.9
C16 C14 H14 109.5 109.3
C24 C14 H14 107.4 109.4
C14 C24 S23 105.9 109.0
C14 C24 H24 110.7 109.6
C14 C24 H24A 110.7 109.5
O52 C16 H16 111.8 109.2
C18 C16 H16 108.5 109.2
C16 C18 C20 111.9 110.0
C16 C18 H18 110.1 109.3
N29 C18 H18 111.5 109.3
C20 C18 H18 106.2 109.4
C18 C20 S23 107.8 109.0
C18 C20 H20 110.0 109.6
C18 C20 H20A 110.1 109.5
S23 C20 H20 110.0 109.5
S23 C20 H20A 110.0 109.6
C20 S23 O27 109.4 108.7
C20 S23 O28 108.8 108.7
H20 C20 H20A 108.9 109.7
C24 S23 O27 109.4 108.6
C24 S23 O28 108.1 108.7
O27 S23 O28 119.3 119.3
H24 C24 H24A 108.2 109.7
C31 N29 HN29 107.8 111.0
N29 C31 C34 113.7 109.5
N29 C31 H31 108.1 109.5
N29 C31 H31A 108.1 109.5
C34 C31 H31 108.1 109.4
C34 C31 H31A 108.1 109.5
C31 C34 C42 117.9 120.0
H31 C31 H31A 110.9 109.5
C35 C34 C42 119.8 120.0
C34 C42 C40 120.2 120.0
C34 C42 H42 119.9 120.0
C37 C35 H35 120.2 120.0
C35 C37 C44 124.1 120.0
C35 C37 C38 119.9 120.0
C38 C37 C44 116.0 120.0
C37 C44 H44 99.9 115.5
C37 C38 C40 120.0 120.0
C37 C38 H38 120.0 120.0
C40 C38 H38 120.0 120.0
C38 C40 H40 119.7 120.0
C42 C40 H40 119.7 120.0
C46 C44 H44 135.2 117.5
C49 C44 H44 135.6 117.6
C49 C46 H46 130.8 117.5
C49 C46 H46A 130.8 117.5
C46 C49 H49 131.0 117.5
C46 C49 H49A 130.9 117.5
H46 C46 H46A 81.9 115.6
H49 C49 H49A 81.7 115.5

Torsion Angles for 3P5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
BR1 C2 C3 C4 177.9 180.0
BR1 C2 C3 O54 358.0 0.0
C9 C2 C3 O54 178.2 180.3
C4 C3 C2 O54 179.9 179.9
C2 C3 C4 H4 181.1 180.0
C2 C3 O54 HO54 180.0 90.0
C2 C3 C4 O54 180.1 180.1
C4 C3 O54 HO54 0.0 270.1
C6 C4 C3 H4 180.0 180.0
C2 C3 O54 C4 179.9 179.9
O54 C3 C4 H4 1.1 360.0
C6 C4 C3 O54 181.1 180.0
C3 C4 C6 H4 180.0 180.0
H4 C4 C3 O54 1.1 360.0
C8 C6 C4 H4 180.1 180.0
H6 C6 C4 H4 0.1 359.9
C11 C8 C6 H6 359.1 0.0
C9 C8 C6 H6 179.3 179.7
H11 C11 C14 H11A 120.0 120.0
C16 C14 C11 C24 237.6 239.5
C16 C14 C11 H14 119.5 119.7
C24 C14 C11 H14 241.9 240.1
C11 C14 C24 S23 172.8 176.2
C11 C14 C24 H24 292.8 296.1
C11 C14 C24 H24A 52.8 56.4
C14 C11 H11 H11A 240.3 240.0
H11 C11 C14 C24 191.4 175.0
H11 C11 C14 H14 309.5 294.8
C14 C11 H11A H11 119.7 120.1
H11A C11 C14 C24 71.4 54.9
H11A C11 C14 H14 189.6 174.8
C16 C14 C11 H11 69.0 54.5
C16 C14 C11 H11A 309.0 294.5
C11 C14 C16 C24 122.8 120.1
C11 C14 C16 H14 241.0 240.3
C24 C14 C16 H14 118.2 120.1
C16 C14 C24 S23 294.5 296.3
C16 C14 C24 H24 54.5 56.2
C16 C14 C24 H24A 174.5 176.5
C24 C14 C11 H11 191.4 175.0
C24 C14 C11 H11A 71.4 54.9
C11 C14 C24 H14 118.9 119.8
C16 C14 C24 H14 240.6 239.9
C14 C24 S23 O27 177.8 168.7
C14 C24 S23 O28 309.3 300.0
H24 C24 C14 H24A 240.0 239.7
H14 C14 C11 H11 309.5 294.8
H14 C14 C11 H11A 189.6 174.8
C11 C14 H14 C24 239.5 240.2
C16 C14 H14 C24 120.1 120.5
H14 C14 C24 S23 53.9 56.4
H14 C14 C24 H24 174.0 176.3
H14 C14 C24 H24A 293.9 296.6
O52 C16 C14 H14 65.9 70.2
C18 C16 O52 H16 241.0 240.6
O52 C16 C18 H18 294.9 289.8
C18 C16 C14 C24 63.8 70.0
C18 C16 C14 H14 305.7 309.9
O52 C16 C18 H16 121.1 119.3
N29 C18 C16 H18 121.1 119.7
C20 C18 C16 H18 242.1 239.9
C16 C18 C20 S23 62.6 63.6
C16 C18 C20 H20 182.6 183.5
C16 C18 C20 H20A 302.6 303.8
H16 C16 C14 C24 305.1 309.7
H16 C16 C14 H14 186.9 189.6
H16 C16 C18 C20 56.0 50.4
H16 C16 C18 H18 173.8 170.5
N29 C18 C16 H16 294.9 290.2
C16 C18 N29 H18 239.8 240.3
C20 C18 N29 H18 117.9 119.7
N29 C18 C20 H20 301.4 303.6
N29 C18 C20 H20A 61.4 64.0
C20 C18 C16 H16 56.0 50.4
C16 C18 C20 H18 120.2 120.1
N29 C18 C20 H18 239.0 240.3
S23 C20 C18 H20 240.0 240.2
S23 C20 C18 H20A 120.0 119.9
C18 C20 S23 O27 184.1 191.4
C18 C20 S23 O28 52.1 60.1
H20 C20 C18 H20A 240.0 239.7
H18 C18 C16 H16 173.8 170.5
C16 C18 H18 C20 238.6 239.5
H18 C18 C20 S23 302.4 303.5
H18 C18 C20 H20 62.4 63.3
H18 C18 C20 H20A 182.4 183.6
C14 C24 S23 C20 63.0 54.3
S23 C20 C18 H18 302.4 303.5
C18 C20 S23 H20 120.0 119.9
C18 C20 S23 H20A 240.0 240.2
H20 C20 S23 H20A 120.0 120.3
C24 S23 C20 O27 114.8 114.3
C24 S23 C20 O28 246.8 245.6
O27 S23 C20 O28 132.0 131.3
H20 C20 C18 H18 62.4 63.3
C18 C20 H20 S23 241.4 240.5
C18 C20 H20 H20A 120.7 120.2
S23 C20 H20 H20A 239.3 239.8
H20 C20 S23 O27 64.1 71.6
H20 C20 S23 O28 292.1 300.2
H20A C20 C18 H18 182.4 183.6
C18 C20 H20A S23 118.6 119.5
C18 C20 H20A H20 239.3 239.7
S23 C20 H20A H20 120.7 120.2
H20A C20 S23 O27 304.1 311.3
H20A C20 S23 O28 172.1 179.9
S23 C24 C14 H14 53.9 56.4
C14 C24 S23 H24 120.0 119.9
C14 C24 S23 H24A 240.0 240.2
C24 S23 C20 H20 178.9 185.8
C24 S23 C20 H20A 58.9 65.5
C20 S23 C24 O27 245.2 245.7
C20 S23 C24 O28 113.7 114.4
O27 S23 C24 O28 228.6 228.7
O27 S23 C20 H20 64.1 71.6
O27 S23 C20 H20A 304.1 311.3
C20 S23 O27 O28 233.8 234.7
C24 S23 O27 O28 125.2 125.3
O28 S23 C20 H20 292.1 300.2
O28 S23 C20 H20A 172.1 179.9
C20 S23 O28 O27 126.5 125.3
C24 S23 O28 O27 234.2 234.8
H24 C24 C14 H14 174.0 176.3
C14 C24 H24 S23 242.9 240.5
C14 C24 H24 H24A 121.4 120.2
H24 C24 S23 O27 57.8 48.8
H24 C24 S23 O28 189.3 180.1
H24A C24 C14 H14 293.9 296.6
C14 C24 H24A S23 117.1 119.5
C14 C24 H24A H24 238.6 239.7
H24A C24 S23 O27 297.8 288.4
H24A C24 S23 O28 69.3 59.7
C31 N29 C18 H18 315.6 183.3
C34 C31 N29 H31 240.0 240.1
C34 C31 N29 H31A 120.0 120.0
N29 C31 C34 C42 239.0 89.9
H31 C31 N29 H31A 240.0 239.9
HN29 N29 C18 H18 75.6 307.2
HN29 N29 C31 C34 298.5 56.1
HN29 N29 C31 H31 58.5 176.0
HN29 N29 C31 H31A 178.5 296.1
C34 C31 N29 HN29 298.5 56.1
N29 C31 C34 H31 120.0 119.9
N29 C31 C34 H31A 240.0 240.0
H31 C31 C34 H31A 120.0 120.0
C35 C34 C31 C42 180.0 180.3
C31 C34 C42 C40 180.2 179.8
C31 C34 C42 H42 0.3 0.0
H31 C31 N29 HN29 58.5 176.0
N29 C31 H31 C34 236.6 240.1
N29 C31 H31 H31A 118.3 120.0
C34 C31 H31 H31A 241.7 240.0
H31 C31 C34 C42 119.0 330.0
H31A C31 N29 HN29 178.5 296.1
N29 C31 H31A C34 123.4 120.0
N29 C31 H31A H31 241.7 240.0
C34 C31 H31A H31 118.3 120.0
H31A C31 C34 C42 359.0 210.0
C35 C34 C31 H31 299.0 150.3
C35 C34 C31 H31A 179.0 30.3
C31 C34 C35 C42 180.0 179.7
C35 C34 C42 C40 0.2 359.5
C35 C34 C42 H42 180.3 179.7
C42 C34 C31 H31 119.0 330.0
C42 C34 C31 H31A 359.0 210.0
C34 C42 C40 H40 179.3 180.3
C37 C35 C34 C42 0.3 0.3
C38 C37 C35 C44 180.2 180.0
C35 C37 C44 H44 179.9 25.6
C35 C37 C38 C40 359.9 0.0
C35 C37 C38 H38 179.9 179.9
H35 C35 C34 C42 180.3 180.3
H35 C35 C37 C44 359.4 0.0
H35 C35 C37 C38 179.7 180.0
C44 C37 C35 H35 359.4 0.0
C35 C37 C44 C38 180.2 180.0
C44 C37 C38 C40 180.1 180.0
C44 C37 C38 H38 0.1 359.9
C46 C44 C37 H44 212.5 214.4
C49 C44 C37 H44 147.6 145.7
C38 C37 C35 H35 179.7 180.0
C35 C37 C38 C44 179.8 180.0
C38 C37 C44 H44 359.7 205.6
C40 C38 C37 H38 180.0 180.1
C37 C38 C40 H40 180.6 179.9
C34 C42 C40 C38 359.3 0.5
C40 C38 C37 C44 180.1 180.0
C37 C38 C40 H38 180.0 179.9
C42 C40 C38 H40 180.0 179.8
H38 C38 C37 C44 0.1 359.9
C37 C38 H38 C40 180.0 180.1
H38 C38 C40 H40 0.6 360.0
C34 C42 C40 H42 180.0 180.3
C42 C40 C38 H38 180.6 179.8
C38 C40 C42 H40 180.0 180.2
H40 C40 C38 H38 0.6 360.0
C34 C42 H42 C40 180.0 179.7
H42 C42 C40 H40 359.3 0.1
C37 C44 C46 H44 131.3 144.9
C49 C44 C46 H44 233.9 252.4
C37 C44 C49 H44 229.0 215.0
C46 C44 C49 H44 125.6 107.5
C49 C46 C44 H44 126.1 107.6
C46 C49 C44 H44 234.4 252.5
H46 C46 C49 H46A 120.0 145.1
H49 C49 C46 H49A 120.0 145.0
H46 C46 C44 H44 246.1 215.0
C49 C46 H46 H46A 221.4 214.2
H46 C46 C49 H49 120.0 145.1
H46 C46 C49 H49A 0.1 0.0
H46A C46 C44 H44 6.1 0.1
C49 C46 H46A H46 138.6 145.8
H46A C46 C49 H49 0.0 360.0
H46A C46 C49 H49A 240.0 214.9
H49 C49 C44 H44 354.4 360.0
H49 C49 C46 H46 120.0 145.1
H49 C49 C46 H46A 0.0 360.0
C46 C49 H49 H49A 221.4 214.3
H49A C49 C44 H44 114.4 145.0
H49A C49 C46 H46 0.1 0.0
H49A C49 C46 H46A 240.0 214.9
C46 C49 H49A H49 138.6 145.7
HO52 O52 C16 H16 62.6 54.6