Atom Nomenclature for 3OL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3OL

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
O1 O1
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
H11 H11
H12 H12
H21 H21
H31 H31
HO1 HO1
H41 H41
H42 H42
H51 H51
H52 H52
H61 H61
H62 H62
H71 H71
H72 H72
H81 H81
H82 H82
H83 H83