Atom Nomenclature for 3OE

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3OE

Atom Name (V3) Atom Name (V2)
C8 C8
C27 C27
O28 O28
C34 C34
C33 C33
C30 C30
C31 C31
C32 C32
O35 O35
C36 C36
C37 C37
C38 C38
C39 C39
C40 C40
C41 C41
C42 C42
N18 N18
C17 C17
C15 C15
O16 O16
C19 C19
O20 O20
C43 C43
N13 N13
C11 C11
C9 C9
O10 O10
C12 C12
C14 C14
C21 C21
C22 C22
C23 C23
C24 C24
C26 C26
C25 C25
C4 C4
C5 C5
C6 C6
C7 C7
S3 S3
C1 C1
C2 C2
N29 N29
H34 H34
H33 H33
H30 H30
H31 H31
H36 H36
H36A H36A
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
HN18 HN18
H17 H17
H19 H19
HO20 HO20
H43 H43
H43A H43A
H43B H43B
HN13 HN13
H11 H11
H12 H12
H12A H12A
H14 H14
H14A H14A
H22 H22
H23 H23
H24 H24
H26 H26
H25 H25
H4 H4
H5 H5
H7 H7
H7A H7A
H7B H7B
H2 H2
H2A H2A
HN29 HN29