PDB Chemical Component 3NZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3NZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N6 |
C6 |
1.373 |
1.384 |
| N7 |
C5 |
1.323 |
1.354 |
| N7 |
C8 |
1.350 |
1.301 |
| C6 |
C5 |
1.473 |
1.405 |
| C6 |
N1 |
1.338 |
1.329 |
| C5 |
C4 |
1.474 |
1.406 |
| C8 |
N9 |
1.371 |
1.364 |
| N1 |
C2 |
1.326 |
1.320 |
| C4 |
N9 |
1.288 |
1.372 |
| C4 |
N3 |
1.332 |
1.329 |
| N9 |
C1' |
1.480 |
1.465 |
| C2 |
N3 |
1.327 |
1.317 |
| O4' |
C1' |
1.421 |
1.448 |
| O4' |
C4' |
1.445 |
1.437 |
| C1' |
C2' |
1.532 |
1.550 |
| C4' |
C5' |
1.525 |
1.530 |
| C4' |
C3' |
1.547 |
1.540 |
| C5' |
O5' |
1.432 |
1.430 |
| C2' |
O2' |
1.429 |
1.429 |
| C2' |
C3' |
1.562 |
1.548 |
| C3' |
N3' |
1.508 |
1.465 |
| O |
C |
1.199 |
1.213 |
| CMZ |
OM |
1.438 |
1.429 |
| N3' |
C |
1.428 |
1.348 |
| C |
CA |
1.550 |
1.507 |
| OM |
CZ |
1.365 |
1.359 |
| CZ |
CE1 |
1.386 |
1.387 |
| CZ |
CE2 |
1.381 |
1.387 |
| CE1 |
CD1 |
1.393 |
1.381 |
| CE2 |
CD2 |
1.385 |
1.382 |
| CD1 |
CG |
1.384 |
1.382 |
| CD2 |
CG |
1.386 |
1.383 |
| CG |
CB |
1.508 |
1.507 |
| CA |
CB |
1.540 |
1.530 |
| CA |
N |
1.440 |
1.469 |
| CA |
H1 |
1.100 |
1.090 |
| CB |
H2 |
1.100 |
1.090 |
| CB |
H3 |
1.100 |
1.090 |
| CD2 |
H4 |
1.080 |
1.080 |
| CE2 |
H5 |
1.080 |
1.080 |
| CMZ |
H6 |
1.100 |
1.090 |
| CMZ |
H7 |
1.099 |
1.090 |
| CMZ |
H8 |
1.100 |
1.090 |
| CE1 |
H9 |
1.080 |
1.080 |
| CD1 |
H10 |
1.080 |
1.080 |
| N |
H11 |
1.000 |
1.009 |
| N |
H12 |
1.000 |
1.009 |
| N3' |
H14 |
1.000 |
0.970 |
| C3' |
H15 |
1.100 |
1.090 |
| C4' |
H16 |
1.100 |
1.090 |
| C5' |
H17 |
1.100 |
1.090 |
| C5' |
H18 |
1.100 |
1.090 |
| O5' |
H19 |
0.951 |
0.967 |
| C2' |
H20 |
1.100 |
1.090 |
| O2' |
H21 |
0.950 |
0.967 |
| C1' |
H22 |
1.100 |
1.090 |
| C8 |
H23 |
1.080 |
1.079 |
| N6 |
H24 |
1.000 |
0.971 |
| N6 |
H25 |
1.000 |
0.970 |
| C2 |
H26 |
1.080 |
1.080 |
Bond Angles for 3NZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N6 |
C6 |
N1 |
116.8 |
120.7 |
| N7 |
C5 |
C4 |
105.7 |
107.1 |
| N7 |
C8 |
H23 |
125.5 |
125.0 |
| C6 |
N1 |
C2 |
123.8 |
121.2 |
| C5 |
C4 |
N3 |
121.4 |
119.1 |
| N1 |
C2 |
N3 |
123.0 |
122.5 |
| N1 |
C2 |
H26 |
118.5 |
118.8 |
| C4 |
N3 |
C2 |
119.6 |
120.6 |
| N9 |
C1' |
H22 |
106.8 |
110.5 |
| N3 |
C2 |
H26 |
118.5 |
118.7 |
| O4' |
C1' |
H22 |
107.5 |
110.6 |
| O4' |
C4' |
H16 |
109.4 |
110.0 |
| C1' |
C2' |
H20 |
109.7 |
110.9 |
| C4' |
C5' |
O5' |
111.0 |
109.5 |
| C5' |
C4' |
H16 |
108.3 |
109.9 |
| C4' |
C5' |
H17 |
109.1 |
109.5 |
| C4' |
C5' |
H18 |
109.1 |
109.5 |
| C4' |
C3' |
H15 |
104.5 |
110.5 |
| O5' |
C5' |
H17 |
109.1 |
109.5 |
| O5' |
C5' |
H18 |
109.1 |
109.4 |
| C5' |
O5' |
H19 |
109.5 |
114.0 |
| O2' |
C2' |
H20 |
111.1 |
110.9 |
| C2' |
O2' |
H21 |
109.5 |
114.0 |
| C2' |
C3' |
H15 |
104.4 |
110.5 |
| C3' |
N3' |
H14 |
110.2 |
119.9 |
| O |
C |
CA |
103.4 |
120.0 |
| C |
CA |
CB |
114.9 |
109.5 |
| C |
CA |
N |
118.6 |
109.4 |
| C |
CA |
H1 |
104.8 |
109.5 |
| OM |
CZ |
CE1 |
121.4 |
120.1 |
| CZ |
CE1 |
CD1 |
119.9 |
120.0 |
| CZ |
CE1 |
H9 |
120.0 |
120.0 |
| CZ |
CE2 |
H5 |
119.7 |
120.1 |
| CD1 |
CE1 |
H9 |
120.0 |
120.1 |
| CE1 |
CD1 |
H10 |
119.9 |
120.0 |
| CE2 |
CD2 |
H4 |
120.0 |
120.0 |
| CG |
CB |
H2 |
107.6 |
109.5 |
| CG |
CB |
H3 |
107.6 |
109.5 |
| CB |
CA |
N |
106.3 |
109.5 |
| CB |
CA |
H1 |
105.0 |
109.5 |
| CA |
CB |
H2 |
107.6 |
109.5 |
| CA |
CB |
H3 |
107.6 |
109.4 |
| N |
CA |
H1 |
106.0 |
109.5 |
| CA |
N |
H11 |
109.5 |
111.0 |
| CA |
N |
H12 |
109.5 |
111.0 |
| H2 |
CB |
H3 |
109.5 |
109.5 |
| H6 |
CMZ |
H7 |
109.5 |
109.5 |
| H6 |
CMZ |
H8 |
109.5 |
109.5 |
| H7 |
CMZ |
H8 |
109.5 |
109.5 |
| H11 |
N |
H12 |
109.4 |
110.9 |
| H17 |
C5' |
H18 |
109.5 |
109.5 |
| H24 |
N6 |
H25 |
109.5 |
120.1 |
Torsion Angles for 3NZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N6 |
C6 |
N1 |
C2 |
180.4 |
179.9 |
| C5 |
N7 |
C8 |
H23 |
179.7 |
180.1 |
| N7 |
C5 |
C4 |
N3 |
179.1 |
180.0 |
| C6 |
C5 |
C4 |
N3 |
0.1 |
359.8 |
| C6 |
N1 |
C2 |
N3 |
359.6 |
359.7 |
| C6 |
N1 |
C2 |
H26 |
179.5 |
180.0 |
| C5 |
C4 |
N3 |
C2 |
0.1 |
359.9 |
| C8 |
N9 |
C1' |
H22 |
346.1 |
142.1 |
| C4 |
N3 |
C2 |
N1 |
0.0 |
0.4 |
| N3 |
C2 |
N1 |
H26 |
180.0 |
179.7 |
| C4 |
N9 |
C1' |
H22 |
164.6 |
321.8 |
| N1 |
C2 |
N3 |
C4 |
0.0 |
0.4 |
| C4 |
N3 |
C2 |
H26 |
180.1 |
180.1 |
| O4' |
C1' |
N9 |
H22 |
240.1 |
237.1 |
| N9 |
C1' |
C2' |
H20 |
45.9 |
37.5 |
| N1 |
C2 |
N3 |
H26 |
180.0 |
180.3 |
| N9 |
C1' |
O4' |
H22 |
119.5 |
122.9 |
| C1' |
O4' |
C4' |
H16 |
290.9 |
266.9 |
| O4' |
C1' |
C2' |
H20 |
277.5 |
278.8 |
| C5' |
C4' |
O4' |
H16 |
240.4 |
238.9 |
| O4' |
C4' |
C5' |
H17 |
70.0 |
187.1 |
| O4' |
C4' |
C5' |
H18 |
189.5 |
307.2 |
| O4' |
C4' |
C3' |
H15 |
83.7 |
116.8 |
| O2' |
C2' |
C1' |
H20 |
238.5 |
236.4 |
| C1' |
C2' |
O2' |
H21 |
180.0 |
67.3 |
| C1' |
C2' |
C3' |
H15 |
246.5 |
220.3 |
| O4' |
C4' |
C5' |
H16 |
120.3 |
121.2 |
| C5' |
C4' |
C3' |
H15 |
321.2 |
357.4 |
| O5' |
C5' |
C4' |
H17 |
239.8 |
240.0 |
| O5' |
C5' |
C4' |
H18 |
120.2 |
120.0 |
| C4' |
C5' |
O5' |
H19 |
180.0 |
180.0 |
| H17 |
C5' |
C4' |
H18 |
240.5 |
239.9 |
| C2' |
C3' |
C4' |
H15 |
251.9 |
241.3 |
| C4' |
C3' |
N3' |
H14 |
179.3 |
91.8 |
| O5' |
C5' |
C4' |
H16 |
189.5 |
306.0 |
| C4' |
C5' |
O5' |
H17 |
120.2 |
120.0 |
| C4' |
C5' |
O5' |
H18 |
239.8 |
240.0 |
| H17 |
C5' |
O5' |
H18 |
119.6 |
120.0 |
| C1' |
C2' |
O2' |
H20 |
120.6 |
123.6 |
| O2' |
C2' |
C3' |
H15 |
128.8 |
102.1 |
| C4' |
C3' |
C2' |
H15 |
108.2 |
118.8 |
| C2' |
C3' |
N3' |
H14 |
53.2 |
336.9 |
| O |
C |
CA |
CB |
319.2 |
99.9 |
| O |
C |
CA |
N |
191.9 |
339.9 |
| O |
C |
CA |
H1 |
73.9 |
220.0 |
| CMZ |
OM |
CZ |
CE1 |
223.0 |
180.0 |
| N3' |
C |
CA |
H1 |
250.8 |
40.4 |
| CB |
CA |
C |
N |
127.3 |
120.0 |
| CB |
CA |
C |
H1 |
245.3 |
239.9 |
| C |
CA |
CB |
H2 |
197.8 |
295.0 |
| C |
CA |
CB |
H3 |
79.9 |
55.0 |
| N |
CA |
C |
H1 |
118.0 |
119.9 |
| C |
CA |
N |
H11 |
180.0 |
296.1 |
| C |
CA |
N |
H12 |
300.0 |
60.0 |
| OM |
CZ |
CE1 |
CD1 |
179.4 |
180.0 |
| OM |
CZ |
CE1 |
H9 |
359.4 |
0.2 |
| OM |
CZ |
CE2 |
H5 |
0.8 |
359.8 |
| CE1 |
CZ |
CE2 |
H5 |
179.6 |
180.0 |
| CD1 |
CE1 |
CZ |
H9 |
180.0 |
179.8 |
| CZ |
CE1 |
CD1 |
H10 |
179.8 |
180.0 |
| CZ |
CE2 |
CD2 |
H4 |
179.8 |
180.0 |
| CZ |
CE1 |
CD1 |
H9 |
180.0 |
180.2 |
| CD1 |
CG |
CB |
H2 |
284.7 |
149.7 |
| CD1 |
CG |
CB |
H3 |
42.6 |
29.7 |
| CD2 |
CG |
CB |
H2 |
105.0 |
330.0 |
| CD2 |
CG |
CB |
H3 |
223.0 |
210.0 |
| CG |
CB |
CA |
N |
92.1 |
295.0 |
| CG |
CB |
CA |
H1 |
204.2 |
55.0 |
| CA |
CB |
CG |
H2 |
239.0 |
120.0 |
| CA |
CB |
CG |
H3 |
121.0 |
240.0 |
| H2 |
CB |
CG |
H3 |
242.1 |
120.0 |
| C |
CA |
CB |
N |
226.7 |
240.0 |
| C |
CA |
CB |
H1 |
114.6 |
120.0 |
| CG |
CB |
CA |
H2 |
121.0 |
240.0 |
| CG |
CB |
CA |
H3 |
239.0 |
120.0 |
| N |
CA |
CB |
H1 |
247.9 |
240.0 |
| CB |
CA |
N |
H11 |
48.7 |
176.1 |
| CB |
CA |
N |
H12 |
168.7 |
300.0 |
| H2 |
CB |
CA |
H3 |
117.9 |
240.0 |
| C |
CA |
N |
CB |
131.3 |
120.0 |
| C |
CA |
N |
H1 |
242.6 |
240.1 |
| CB |
CA |
N |
H1 |
111.3 |
120.0 |
| N |
CA |
CB |
H2 |
331.1 |
55.0 |
| N |
CA |
CB |
H3 |
213.2 |
175.0 |
| H11 |
N |
CA |
H12 |
240.0 |
236.1 |
| C |
CA |
H1 |
CB |
238.6 |
239.9 |
| C |
CA |
H1 |
N |
126.2 |
119.9 |
| CB |
CA |
H1 |
N |
247.7 |
240.0 |
| H1 |
CA |
CB |
H2 |
83.2 |
175.0 |
| H1 |
CA |
CB |
H3 |
325.3 |
295.0 |
| H1 |
CA |
N |
H11 |
297.4 |
56.0 |
| H1 |
CA |
N |
H12 |
57.4 |
180.0 |
| CG |
CB |
H2 |
H3 |
116.7 |
240.0 |
| H2 |
CB |
CA |
N |
331.1 |
55.0 |
| H2 |
CB |
CA |
H1 |
83.2 |
175.0 |
| CA |
CB |
H2 |
H3 |
243.3 |
120.0 |
| CG |
CB |
H3 |
H2 |
243.3 |
120.0 |
| H3 |
CB |
CA |
N |
213.2 |
175.0 |
| H3 |
CB |
CA |
H1 |
325.3 |
295.0 |
| CA |
CB |
H3 |
H2 |
116.7 |
240.0 |
| H5 |
CE2 |
CD2 |
H4 |
359.8 |
360.0 |
| H7 |
CMZ |
H6 |
H8 |
120.0 |
120.0 |
| H6 |
CMZ |
H7 |
H8 |
240.0 |
240.0 |
| H6 |
CMZ |
H8 |
H7 |
120.0 |
120.0 |
| CZ |
CE1 |
H9 |
CD1 |
180.0 |
179.8 |
| H9 |
CE1 |
CD1 |
H10 |
359.8 |
359.8 |
| H10 |
CD1 |
CE1 |
H9 |
359.8 |
359.8 |
| H11 |
N |
CA |
H1 |
297.4 |
56.0 |
| CA |
N |
H11 |
H12 |
120.0 |
124.0 |
| H12 |
N |
CA |
H1 |
57.4 |
180.0 |
| CA |
N |
H12 |
H11 |
240.0 |
236.0 |
| H15 |
C3' |
N3' |
H14 |
296.9 |
214.4 |
| H16 |
C4' |
C5' |
O5' |
189.5 |
306.0 |
| H16 |
C4' |
C5' |
H17 |
309.7 |
66.0 |
| H16 |
C4' |
C5' |
H18 |
69.2 |
186.0 |
| H16 |
C4' |
C3' |
H15 |
200.7 |
236.4 |
| C4' |
C5' |
H17 |
O5' |
238.6 |
240.0 |
| H17 |
C5' |
C4' |
H16 |
309.7 |
66.0 |
| C4' |
C5' |
H17 |
H18 |
119.3 |
120.1 |
| O5' |
C5' |
H17 |
H18 |
240.7 |
240.0 |
| H17 |
C5' |
O5' |
H19 |
59.8 |
60.0 |
| C4' |
C5' |
H18 |
O5' |
121.4 |
120.0 |
| H18 |
C5' |
C4' |
H16 |
69.2 |
186.0 |
| C4' |
C5' |
H18 |
H17 |
240.7 |
240.0 |
| O5' |
C5' |
H18 |
H17 |
119.4 |
120.0 |
| H18 |
C5' |
O5' |
H19 |
300.2 |
300.0 |
| H19 |
O5' |
C5' |
H17 |
59.8 |
60.0 |
| H19 |
O5' |
C5' |
H18 |
300.2 |
300.0 |
| H20 |
C2' |
O2' |
H21 |
59.5 |
303.6 |
| H20 |
C2' |
C3' |
H15 |
3.2 |
338.4 |
| H21 |
O2' |
C2' |
H20 |
59.5 |
303.6 |
| H22 |
C1' |
C2' |
H20 |
164.3 |
160.3 |
| H24 |
N6 |
C6 |
N1 |
360.0 |
180.0 |
| H25 |
N6 |
C6 |
N1 |
120.0 |
0.1 |
| N1 |
C2 |
H26 |
N3 |
180.0 |
179.7 |