PDB Chemical Component 3NA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3NA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2	C4	1.401	1.391
C2	C5	1.407	1.378
C2	H2	1.080	1.080
C3	C6	1.402	1.366
C3	C7	1.434	1.396
C3	H3	1.080	1.080
C4	C7	1.360	1.407
C4	N15	1.378	1.377
C5	C6	1.500	1.388
C5	H5	1.080	1.079
C6	H6	1.080	1.081
C7	C11	1.461	1.465
C11	C16	1.364	1.342
C11	C17	1.512	1.506
C13	S14	1.743	1.736
C13	C17	1.534	1.507
C13	N36	1.298	1.303
S14	C27	1.707	1.775
N15	C16	1.348	1.368
N15	C20	1.453	1.465
C16	H16	1.079	1.080
C17	H171	1.100	1.090
C17	H172	1.100	1.091
F19	C28	1.346	1.351
C20	C32	1.571	1.507
C20	H201	1.100	1.089
C20	H202	1.100	1.089
F22	C26	1.345	1.351
F23	C29	1.366	1.351
C24	C26	1.385	1.414
C24	C27	1.386	1.413
C24	N36	1.400	1.350
C25	C28	1.389	1.385
C25	C29	1.371	1.389
C25	H25	1.079	1.080
C26	C29	1.383	1.374
C27	C28	1.406	1.375
C32	O33	1.186	1.208
C32	O34	1.284	1.343
O34	H34	0.950	0.968

Bond Angles for 3NA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4	C2	C5	117.6	119.8
C4	C2	H2	121.2	120.1
C2	C4	C7	123.8	119.3
C2	C4	N15	128.5	133.6
C5	C2	H2	121.2	120.1
C2	C5	C6	118.5	120.6
C2	C5	H5	120.8	119.7
C6	C3	C7	115.6	119.7
C6	C3	H3	122.2	120.2
C3	C6	C5	121.7	120.6
C3	C6	H6	119.1	119.7
C7	C3	H3	122.2	120.1
C3	C7	C4	122.4	119.9
C3	C7	C11	129.8	134.0
C7	C4	N15	107.6	107.1
C4	C7	C11	107.7	106.0
C4	N15	C16	109.7	109.9
C4	N15	C20	125.2	125.0
C6	C5	H5	120.7	119.7
C5	C6	H6	119.1	119.7
C7	C11	C16	105.0	107.0
C7	C11	C17	127.0	126.5
C16	C11	C17	127.9	126.5
C11	C16	N15	110.0	110.0
C11	C16	H16	125.0	125.1
C11	C17	C13	109.2	109.5
C11	C17	H171	109.6	109.5
C11	C17	H172	109.6	109.5
S14	C13	C17	121.8	128.4
S14	C13	N36	115.8	103.3
C13	S14	C27	89.5	97.6
C17	C13	N36	122.4	128.4
C13	C17	H171	109.7	109.4
C13	C17	H172	109.6	109.5
C13	N36	C24	109.5	122.5
S14	C27	C24	109.8	102.1
S14	C27	C28	130.2	135.4
C16	N15	C20	125.0	125.1
N15	C16	H16	125.0	125.0
N15	C20	C32	112.3	109.4
N15	C20	H201	107.9	109.5
N15	C20	H202	108.6	109.5
H171	C17	H172	109.2	109.4
F19	C28	C25	120.2	120.2
F19	C28	C27	118.3	120.3
C32	C20	H201	107.9	109.5
C32	C20	H202	108.5	109.4
C20	C32	O33	115.0	120.1
C20	C32	O34	117.6	119.9
H201	C20	H202	111.7	109.5
F22	C26	C24	120.8	119.7
F22	C26	C29	120.2	119.7
F23	C29	C25	117.6	119.3
F23	C29	C26	118.3	119.3
C26	C24	C27	119.2	116.5
C26	C24	N36	125.5	129.0
C24	C26	C29	119.0	120.6
C27	C24	N36	115.4	114.5
C24	C27	C28	120.0	122.6
C28	C25	C29	116.2	119.4
C28	C25	H25	121.9	120.3
C25	C28	C27	121.5	119.5
C29	C25	H25	121.9	120.3
C25	C29	C26	124.1	121.4
O33	C32	O34	127.0	120.0
C32	O34	H34	109.5	120.0

Torsion Angles for 3NA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C2	C4	H2	180.0	180.3
C4	C2	C5	C6	2.7	359.7
C4	C2	C5	H5	182.7	179.8
C3	C7	C4	C2	352.8	359.5
C7	C4	C2	N15	184.9	180.8
C2	C4	C7	C11	176.8	179.8
C2	C4	N15	C16	182.9	180.4
C2	C4	N15	C20	358.5	0.5
C4	C2	C5	H2	180.0	179.7
C5	C2	C4	C7	3.2	0.5
C5	C2	C4	N15	178.3	179.7
C3	C6	C5	C2	355.0	0.1
C6	C5	C2	H5	180.0	179.9
C2	C5	C6	H6	175.1	180.1
C4	C2	H2	C5	180.0	180.3
H2	C2	C4	C7	183.2	180.2
H2	C2	C4	N15	358.3	359.5
H2	C2	C5	C6	182.7	180.0
H2	C2	C5	H5	2.7	0.1
C2	C5	C6	C3	355.0	0.1
C7	C3	C6	H3	180.0	179.9
C6	C3	C7	C4	4.6	0.3
C6	C3	C7	C11	179.7	179.9
C3	C6	C5	H5	175.0	180.0
C5	C6	C3	H6	180.0	180.0
C2	C4	C7	C3	352.8	359.5
C6	C3	C7	H3	180.0	180.1
C7	C3	C6	C5	1.4	359.9
C7	C3	C6	H6	181.3	179.9
C3	C7	C4	N15	176.8	180.1
C4	C7	C3	C11	184.9	180.4
C3	C7	C11	C16	184.4	180.1
C3	C7	C11	C17	8.1	0.1
C6	C3	H3	C7	180.0	179.9
H3	C3	C6	C5	181.4	180.1
H3	C3	C6	H6	1.3	0.1
H3	C3	C7	C4	184.6	180.2
H3	C3	C7	C11	359.7	359.8
C7	C4	C2	C5	3.2	0.5
C7	C4	C2	H2	183.2	180.2
C2	C4	C7	N15	176.0	179.4
C4	C7	C3	H3	184.6	180.2
C3	C7	C4	C11	176.1	179.7
C7	C4	N15	C16	358.6	359.7
C7	C4	N15	C20	174.3	179.8
C4	C7	C11	C16	0.1	359.7
C4	C7	C11	C17	183.8	179.8
N15	C4	C2	C5	178.3	179.7
N15	C4	C2	H2	358.3	359.5
C2	C4	N15	C7	184.3	180.7
N15	C4	C7	C11	0.8	0.3
C11	C16	N15	C4	1.5	0.2
C16	N15	C4	C20	184.3	179.8
C4	N15	C16	H16	181.5	180.2
C4	N15	C20	C32	260.6	84.8
C4	N15	C20	H201	141.8	324.8
C4	N15	C20	H202	20.6	204.7
C6	C5	C2	H2	182.7	180.0
C2	C5	C6	H5	180.0	180.1
C5	C6	C3	C7	1.4	359.9
C5	C6	C3	H3	181.4	180.1
C3	C6	C5	H6	180.0	180.0
H5	C5	C2	H2	2.7	0.1
C2	C5	H5	C6	180.0	179.9
H5	C5	C6	H6	355.1	360.0
H6	C6	C3	C7	181.3	179.9
H6	C6	C3	H3	1.3	0.1
C3	C6	H6	C5	180.0	180.0
H6	C6	C5	H5	355.1	360.0
C11	C7	C3	H3	359.7	359.8
C3	C7	C11	C4	184.3	180.3
C11	C7	C4	N15	0.8	0.3
C16	C11	C7	C17	176.3	179.9
C7	C11	C16	N15	359.0	0.1
C7	C11	C16	H16	179.1	180.0
C7	C11	C17	C13	86.3	85.0
C7	C11	C17	H171	326.2	205.0
C7	C11	C17	H172	206.3	324.9
C4	N15	C16	C11	1.5	0.2
C7	C11	C16	C17	183.8	180.1
C16	C11	C17	C13	270.8	265.0
C16	C11	C17	H171	150.7	25.0
C16	C11	C17	H172	30.8	145.0
C11	C16	N15	C20	185.8	180.0
N15	C16	C11	H16	180.0	180.1
C7	C11	C17	C16	175.5	179.9
C17	C11	C16	N15	175.3	180.0
C17	C11	C16	H16	355.3	359.9
S14	C13	C17	C11	337.4	270.0
C11	C17	C13	N36	157.6	89.7
C13	C17	C11	H171	120.1	240.0
C13	C17	C11	H172	240.0	120.0
H171	C17	C11	H172	119.8	240.0
C11	C17	C13	S14	337.4	270.0
C17	C13	S14	N36	180.2	179.7
S14	C13	C17	H171	97.6	149.9
S14	C13	C17	H172	217.4	30.0
S14	C13	N36	C24	359.6	359.5
C13	S14	C27	C24	357.6	0.1
C13	S14	C27	C28	181.4	180.0
C11	C17	C13	H171	239.9	120.0
C11	C17	C13	H172	120.0	240.0
S14	C13	C17	N36	179.8	180.3
C17	C13	S14	C27	181.9	179.9
C17	C13	N36	C24	179.4	179.8
H171	C17	C13	H172	240.1	119.9
S14	C13	N36	C17	180.2	179.7
N36	C13	S14	C27	1.7	0.2
N36	C13	C17	H171	277.8	329.6
N36	C13	C17	H172	37.6	209.7
C26	C24	N36	C13	179.4	180.2
C27	C24	N36	C13	358.5	0.5
C27	S14	C13	C17	181.9	179.9
C27	S14	C13	N36	1.7	0.2
F19	C28	C27	S14	357.2	0.0
C26	C24	C27	S14	181.9	180.0
S14	C27	C24	N36	2.8	359.7
C24	C27	S14	C28	176.2	180.1
C25	C28	C27	S14	176.0	180.0
C4	N15	C16	C20	175.7	180.2
N15	C16	C11	C17	175.3	180.0
C11	C16	N15	H16	180.0	179.9
C16	N15	C20	C32	75.7	265.0
C16	N15	C20	H201	316.9	145.0
C16	N15	C20	H202	195.7	24.9
C4	N15	C20	C16	185.0	179.8
C20	N15	C16	H16	5.8	0.1
C32	C20	N15	H201	118.8	120.0
C32	C20	N15	H202	240.0	240.1
N15	C20	C32	O33	187.7	360.0
N15	C20	C32	O34	0.6	180.0
H201	C20	N15	H202	121.2	120.1
H16	C16	C11	C17	355.3	359.9
C11	C16	H16	N15	180.0	180.1
H16	C16	N15	C20	5.8	0.1
C11	C17	H171	C13	119.8	240.0
C11	C17	H171	H172	239.9	120.0
H171	C17	C13	N36	277.8	329.6
C13	C17	H171	H172	120.1	240.1
C11	C17	H172	C13	240.2	120.0
C11	C17	H172	H171	120.1	240.0
H172	C17	C13	N36	37.6	209.7
C13	C17	H172	H171	239.9	119.9
S14	C27	C28	F19	357.2	0.0
C24	C27	C28	F19	181.3	180.0
F19	C28	C25	C29	179.0	180.0
F19	C28	C25	H25	359.0	359.9
C25	C28	F19	C27	181.1	180.0
N15	C20	C32	H201	241.2	240.0
N15	C20	C32	H202	120.0	119.9
H201	C20	C32	H202	238.8	239.9
O33	C32	C20	O34	187.1	180.0
C20	C32	O34	H34	188.1	180.0
N15	C20	H201	C32	121.6	119.9
N15	C20	H201	H202	240.8	240.0
C32	C20	H201	H202	119.2	120.0
H201	C20	C32	O33	306.5	119.9
H201	C20	C32	O34	119.4	300.0
N15	C20	H202	C32	237.7	240.1
N15	C20	H202	H201	118.8	120.0
C32	C20	H202	H201	241.2	240.0
H202	C20	C32	O33	67.7	240.0
H202	C20	C32	O34	240.6	60.1
F23	C29	C26	F22	358.9	0.0
F22	C26	C24	C27	180.9	179.9
F22	C26	C24	N36	359.9	0.3
C24	C26	F22	C29	181.4	180.0
C25	C29	C26	F22	179.4	180.0
F22	C26	C29	F23	358.9	0.0
C24	C26	C29	F23	177.5	180.0
C28	C25	C29	F23	181.2	180.0
F23	C29	C25	H25	1.2	0.1
C25	C29	F23	C26	179.5	180.0
C13	N36	C24	C26	179.4	180.2
S14	C27	C24	C26	181.9	180.0
F22	C26	C24	C29	178.6	180.0
F23	C29	C26	C24	177.5	180.0
C27	C24	C26	N36	180.9	179.6
C26	C24	C27	C28	358.6	0.1
C25	C29	C26	C24	358.0	0.1
C13	N36	C24	C27	358.5	0.5
S14	C27	C24	C28	183.3	180.0
F19	C28	C27	C24	181.3	180.0
C26	C24	C27	N36	179.2	180.3
C27	C24	C26	C29	2.3	359.9
C25	C28	C27	C24	0.1	359.9
C26	C24	N36	C27	180.9	179.6
N36	C24	C26	C29	181.4	180.3
N36	C24	C27	C28	179.4	179.7
S14	C27	C28	C25	176.0	180.0
F19	C28	C25	C27	178.8	180.0
F23	C29	C25	C28	181.2	180.0
C24	C27	C28	C25	0.1	359.9
C29	C25	C28	H25	180.0	180.1
C28	C25	C29	C26	0.7	360.0
F22	C26	C29	C25	179.4	180.0
F23	C29	C25	C26	180.5	180.0
C24	C26	C29	C25	358.0	0.1
C28	C25	C29	H25	180.0	179.9
C29	C25	C28	C27	0.2	0.0
C28	C25	H25	C29	180.0	180.1
H25	C25	C28	C27	180.2	180.0
H25	C25	C29	C26	180.7	180.0
F22	C26	C29	C24	181.4	180.0
F23	C29	C26	C25	179.5	180.0
C29	C26	C24	C27	2.3	359.9
C29	C26	C24	N36	181.4	180.3
C26	C29	C25	H25	180.7	180.0
S14	C27	C28	C24	175.9	180.1
F19	C28	C27	C25	181.2	180.0
C28	C27	C24	N36	179.4	179.7
C27	C28	C25	C29	0.2	0.0
C27	C28	C25	H25	180.2	180.0
O33	C32	C20	H201	306.5	119.9
O33	C32	C20	H202	67.7	240.0
C20	C32	O33	O34	172.1	180.0
O33	C32	O34	H34	360.0	0.0
O34	C32	C20	H201	119.4	300.0
O34	C32	C20	H202	240.6	60.1
C20	C32	O34	O33	188.1	180.0