PDB Chemical Component 3MY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3MY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OBD |
CZ |
1.392 |
1.360 |
| CZ |
CE2 |
1.424 |
1.388 |
| CZ |
CE1 |
1.416 |
1.387 |
| CE2 |
CD2 |
1.390 |
1.383 |
| CE2 |
CL |
1.749 |
1.736 |
| CD2 |
CG |
1.388 |
1.382 |
| CE1 |
CD1 |
1.406 |
1.382 |
| CD1 |
CG |
1.416 |
1.383 |
| CG |
CB |
1.554 |
1.508 |
| CB |
CA |
1.588 |
1.529 |
| CA |
C |
1.521 |
1.507 |
| CA |
N |
1.460 |
1.469 |
| C |
O |
1.271 |
1.208 |
| C |
OXT |
1.387 |
1.343 |
| OBD |
HBD |
0.950 |
0.967 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CB |
HB1C |
1.100 |
1.090 |
| CB |
HB2C |
1.100 |
1.090 |
| CA |
HA |
1.100 |
1.091 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for 3MY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OBD |
CZ |
CE2 |
121.6 |
120.1 |
| OBD |
CZ |
CE1 |
119.8 |
120.0 |
| CZ |
OBD |
HBD |
109.5 |
114.0 |
| CE2 |
CZ |
CE1 |
118.6 |
119.9 |
| CZ |
CE2 |
CD2 |
120.1 |
119.9 |
| CZ |
CE2 |
CL |
126.5 |
120.0 |
| CZ |
CE1 |
CD1 |
120.7 |
120.0 |
| CZ |
CE1 |
HE1 |
119.7 |
120.0 |
| CD2 |
CE2 |
CL |
113.4 |
120.0 |
| CE2 |
CD2 |
CG |
121.2 |
120.0 |
| CE2 |
CD2 |
HD2 |
119.4 |
120.0 |
| CD2 |
CG |
CD1 |
119.9 |
120.1 |
| CD2 |
CG |
CB |
115.0 |
119.9 |
| CG |
CD2 |
HD2 |
119.4 |
120.0 |
| CE1 |
CD1 |
CG |
119.4 |
120.1 |
| CD1 |
CE1 |
HE1 |
119.6 |
120.0 |
| CE1 |
CD1 |
HD1 |
120.3 |
120.0 |
| CD1 |
CG |
CB |
125.0 |
119.9 |
| CG |
CD1 |
HD1 |
120.3 |
120.0 |
| CG |
CB |
CA |
121.1 |
109.5 |
| CG |
CB |
HB1C |
105.7 |
109.4 |
| CG |
CB |
HB2C |
103.1 |
109.5 |
| CB |
CA |
C |
118.1 |
109.5 |
| CB |
CA |
N |
113.1 |
109.5 |
| CA |
CB |
HB1C |
105.8 |
109.4 |
| CA |
CB |
HB2C |
103.0 |
109.5 |
| CB |
CA |
HA |
100.0 |
109.5 |
| C |
CA |
N |
108.7 |
109.5 |
| CA |
C |
O |
116.2 |
120.0 |
| CA |
C |
OXT |
116.9 |
120.0 |
| C |
CA |
HA |
105.2 |
109.5 |
| N |
CA |
HA |
111.1 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
110.9 |
| O |
C |
OXT |
126.8 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| HB1C |
CB |
HB2C |
119.1 |
109.5 |
| H |
N |
H2 |
109.4 |
111.0 |
Torsion Angles for 3MY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CE2 |
CZ |
OBD |
CE1 |
177.9 |
180.3 |
| OBD |
CZ |
CE2 |
CD2 |
181.9 |
180.0 |
| OBD |
CZ |
CE2 |
CL |
0.2 |
359.9 |
| OBD |
CZ |
CE1 |
CD1 |
177.5 |
180.0 |
| OBD |
CZ |
CE1 |
HE1 |
357.5 |
0.0 |
| OBD |
CZ |
CE2 |
CE1 |
182.0 |
179.7 |
| CE2 |
CZ |
OBD |
HBD |
6.2 |
90.0 |
| CE2 |
CZ |
CE1 |
CD1 |
359.4 |
359.7 |
| CE2 |
CZ |
CE1 |
HE1 |
179.5 |
179.7 |
| CD2 |
CE2 |
CZ |
CL |
181.7 |
180.1 |
| CZ |
CE2 |
CD2 |
CG |
2.3 |
360.0 |
| CZ |
CE2 |
CD2 |
HD2 |
182.3 |
180.0 |
| OBD |
CZ |
CE1 |
CE2 |
178.0 |
180.3 |
| CE1 |
CZ |
OBD |
HBD |
188.3 |
269.7 |
| CE1 |
CZ |
CE2 |
CD2 |
359.9 |
0.3 |
| CE1 |
CZ |
CE2 |
CL |
178.2 |
180.2 |
| CZ |
CE1 |
CD1 |
CG |
359.1 |
360.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
| CZ |
CE1 |
CD1 |
HD1 |
179.1 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
359.9 |
0.3 |
| CZ |
CE2 |
CD2 |
CL |
178.5 |
179.9 |
| CE2 |
CD2 |
CG |
CD1 |
356.2 |
359.8 |
| CE2 |
CD2 |
CG |
CB |
178.5 |
180.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
179.9 |
| CL |
CE2 |
CZ |
CE1 |
178.2 |
180.2 |
| CZ |
CE2 |
CL |
CD2 |
181.6 |
180.1 |
| CL |
CE2 |
CD2 |
CG |
183.8 |
180.0 |
| CL |
CE2 |
CD2 |
HD2 |
3.8 |
0.1 |
| CG |
CD2 |
CE2 |
CL |
183.8 |
180.0 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
| CE1 |
CD1 |
CG |
CD2 |
3.1 |
0.3 |
| CD1 |
CG |
CD2 |
CB |
177.7 |
179.8 |
| CD2 |
CG |
CD1 |
HD1 |
183.1 |
180.2 |
| CD2 |
CG |
CB |
CA |
269.4 |
90.0 |
| CD2 |
CG |
CB |
HB1C |
29.4 |
210.0 |
| CD2 |
CG |
CB |
HB2C |
155.2 |
330.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CD2 |
CG |
CD1 |
CE1 |
3.1 |
0.3 |
| CE1 |
CD1 |
CG |
CB |
180.6 |
180.0 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CD2 |
CG |
CD1 |
CB |
182.5 |
180.2 |
| CD1 |
CG |
CD2 |
HD2 |
176.2 |
179.7 |
| CG |
CD1 |
CE1 |
HE1 |
179.1 |
180.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CD1 |
CG |
CB |
CA |
91.8 |
270.3 |
| CD1 |
CG |
CB |
HB1C |
211.8 |
30.2 |
| CD1 |
CG |
CB |
HB2C |
337.6 |
150.2 |
| CD2 |
CG |
CB |
CD1 |
177.6 |
179.8 |
| CB |
CG |
CD2 |
HD2 |
358.5 |
359.9 |
| CB |
CG |
CD1 |
HD1 |
0.6 |
0.0 |
| CG |
CB |
CA |
C |
6.2 |
185.0 |
| CG |
CB |
CA |
N |
237.6 |
65.0 |
| CA |
CB |
CG |
HB1C |
240.0 |
240.1 |
| CA |
CB |
CG |
HB2C |
114.2 |
120.1 |
| CG |
CB |
CA |
HA |
119.4 |
305.0 |
| HB1C |
CB |
CG |
HB2C |
234.2 |
240.0 |
| CG |
CB |
CA |
HB1C |
120.0 |
119.9 |
| CG |
CB |
CA |
HB2C |
245.8 |
240.0 |
| C |
CA |
CB |
N |
128.6 |
120.0 |
| CB |
CA |
C |
O |
77.8 |
260.0 |
| CB |
CA |
C |
OXT |
257.6 |
80.0 |
| C |
CA |
CB |
HA |
246.8 |
240.0 |
| N |
CA |
CB |
HA |
118.2 |
120.0 |
| CB |
CA |
N |
H |
71.3 |
296.0 |
| CB |
CA |
N |
H2 |
191.3 |
60.0 |
| HB1C |
CB |
CA |
HB2C |
125.8 |
120.0 |
| CB |
CA |
C |
N |
229.4 |
240.0 |
| C |
CA |
CB |
HB1C |
246.2 |
65.0 |
| C |
CA |
CB |
HB2C |
120.4 |
305.0 |
| CB |
CA |
C |
HA |
110.3 |
120.0 |
| N |
CA |
C |
HA |
240.9 |
240.0 |
| C |
CA |
N |
H |
298.1 |
176.0 |
| C |
CA |
N |
H2 |
58.1 |
300.0 |
| O |
C |
CA |
OXT |
180.2 |
180.0 |
| CA |
C |
OXT |
HXT |
180.3 |
180.0 |
| CB |
CA |
N |
C |
133.2 |
120.0 |
| N |
CA |
CB |
HB1C |
117.6 |
305.0 |
| N |
CA |
CB |
HB2C |
351.8 |
185.0 |
| CB |
CA |
N |
HA |
248.5 |
240.0 |
| N |
CA |
C |
O |
208.4 |
20.0 |
| N |
CA |
C |
OXT |
28.2 |
200.0 |
| C |
CA |
N |
HA |
115.3 |
120.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| O |
C |
CA |
N |
208.4 |
20.0 |
| CA |
C |
O |
OXT |
179.7 |
180.0 |
| O |
C |
CA |
HA |
327.5 |
140.0 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| OXT |
C |
CA |
N |
28.2 |
200.0 |
| CA |
C |
OXT |
O |
180.3 |
180.0 |
| OXT |
C |
CA |
HA |
147.2 |
320.0 |
| HBD |
OBD |
CZ |
CE2 |
6.2 |
90.0 |
| HBD |
OBD |
CZ |
CE1 |
188.3 |
269.7 |
| CZ |
CE1 |
HE1 |
CD1 |
180.0 |
180.0 |
| HE1 |
CE1 |
CD1 |
CG |
179.1 |
180.0 |
| HE1 |
CE1 |
CD1 |
HD1 |
359.0 |
0.0 |
| HD2 |
CD2 |
CE2 |
CL |
3.8 |
0.1 |
| CE2 |
CD2 |
HD2 |
CG |
180.0 |
179.9 |
| HD2 |
CD2 |
CG |
CD1 |
176.2 |
179.7 |
| HD2 |
CD2 |
CG |
CB |
358.5 |
359.9 |
| CE1 |
CD1 |
HD1 |
CG |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
359.0 |
0.0 |
| HD1 |
CD1 |
CG |
CB |
0.6 |
0.0 |
| CG |
CB |
HB1C |
CA |
230.4 |
240.0 |
| CG |
CB |
HB1C |
HB2C |
115.2 |
120.0 |
| HB1C |
CB |
CA |
C |
246.2 |
65.0 |
| HB1C |
CB |
CA |
N |
117.6 |
305.0 |
| CA |
CB |
HB1C |
HB2C |
244.8 |
240.0 |
| HB1C |
CB |
CA |
HA |
359.4 |
185.0 |
| CG |
CB |
HB2C |
CA |
126.7 |
120.0 |
| CG |
CB |
HB2C |
HB1C |
243.4 |
240.0 |
| HB2C |
CB |
CA |
C |
120.4 |
305.0 |
| HB2C |
CB |
CA |
N |
351.8 |
185.0 |
| CA |
CB |
HB2C |
HB1C |
116.6 |
120.0 |
| HB2C |
CB |
CA |
HA |
233.6 |
65.0 |
| CB |
CA |
HA |
C |
237.1 |
240.0 |
| CB |
CA |
HA |
N |
119.7 |
120.0 |
| HA |
CA |
CB |
HB1C |
359.4 |
185.0 |
| HA |
CA |
CB |
HB2C |
233.6 |
65.0 |
| C |
CA |
HA |
N |
242.5 |
240.0 |
| HA |
CA |
C |
O |
327.5 |
140.0 |
| HA |
CA |
C |
OXT |
147.2 |
320.0 |
| HA |
CA |
N |
H |
182.8 |
56.0 |
| HA |
CA |
N |
H2 |
302.8 |
180.0 |
| H |
N |
CA |
HA |
182.8 |
56.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H2 |
N |
CA |
HA |
302.8 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |