PDB Chemical Component 3M6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3M6

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C01 C02 1.500 1.530
O46 C44 1.272 1.208
C02 C44 1.512 1.507
C02 N03 1.442 1.465
C44 O45 1.270 1.343
C10 N09 1.453 1.464
C08 N09 1.453 1.465
C08 C07 1.521 1.530
N09 C11 1.474 1.348
N03 C04 1.451 1.470
N03 C42 1.446 1.347
C05 C07 1.537 1.525
C05 C04 1.537 1.530
C05 C06 1.508 1.530
O43 C42 1.203 1.215
C07 O24 1.437 1.429
C42 C41 1.550 1.469
C11 N13 1.446 1.348
C11 O12 1.209 1.216
N13 C14 1.468 1.400
O24 C25 1.451 1.360
C41 C25 1.396 1.399
C41 C40 1.424 1.401
C25 C26 1.423 1.391
C15 C14 1.397 1.389
C15 C16 1.401 1.382
C14 C19 1.402 1.389
C40 C39 1.384 1.377
C16 C17 1.391 1.383
C19 C18 1.407 1.381
C26 N27 1.475 1.400
C26 C38 1.388 1.386
C36 C37 1.380 1.382
C36 C34 1.402 1.386
N27 S28 1.678 1.656
C37 C31 1.399 1.383
C39 C38 1.410 1.385
F35 C34 1.330 1.351
C34 C33 1.378 1.384
C17 C18 1.403 1.382
C17 C20 1.543 1.508
C31 S28 1.814 1.762
C31 C32 1.384 1.382
S28 O30 1.434 1.421
S28 O29 1.455 1.420
C33 C32 1.399 1.383
F21 C20 1.344 1.399
C20 F23 1.349 1.399
C20 F22 1.351 1.399
C15 H1 1.080 1.080
C16 H2 1.080 1.080
C01 H3 1.100 1.090
C01 H4 1.100 1.090
C01 H5 1.101 1.090
C02 H6 1.100 1.090
C04 H7 1.100 1.090
C04 H8 1.100 1.089
C05 H9 1.100 1.090
C06 H10 1.100 1.090
C06 H11 1.100 1.091
C06 H12 1.100 1.089
C07 H13 1.100 1.090
C08 H14 1.100 1.091
C08 H15 1.100 1.089
C10 H16 1.100 1.090
C10 H17 1.100 1.090
C10 H18 1.100 1.090
N13 H19 1.000 0.970
C18 H20 1.080 1.080
C19 H21 1.080 1.080
N27 H22 1.000 0.970
C32 H23 1.080 1.080
C33 H24 1.080 1.080
C36 H25 1.080 1.080
C37 H26 1.080 1.080
C38 H27 1.080 1.080
C39 H28 1.080 1.080
C40 H29 1.080 1.080
O45 H30 0.950 0.967

Bond Angles for 3M6

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C01 C02 C44 110.4 109.5
C01 C02 N03 110.2 109.5
C02 C01 H3 109.5 109.5
C02 C01 H4 109.5 109.5
C02 C01 H5 109.4 109.5
C01 C02 H6 108.4 109.5
N03 C02 C44 110.5 109.4
C02 C44 O45 120.0 120.0
C44 C02 H6 108.2 109.5
C02 N03 C04 117.8 120.5
C02 N03 C42 121.3 120.5
N03 C02 H6 109.2 109.4
C44 O45 H30 109.5 117.0
N09 C08 H14 109.2 109.5
N09 C08 H15 109.2 109.5
C08 C07 O24 108.8 109.4
C08 C07 H13 108.8 109.2
N09 C11 N13 117.3 120.0
N09 C11 O12 119.9 120.0
C04 N03 C42 120.9 119.0
N03 C04 H7 109.2 109.5
N03 C04 H8 109.2 109.5
N03 C42 C41 123.8 121.4
C06 C05 C07 109.6 109.4
C05 C07 O24 111.8 110.2
C07 C05 H9 108.7 109.4
C05 C07 H13 108.6 109.3
C05 C04 H7 109.2 109.5
C05 C04 H8 109.2 109.6
C06 C05 H9 109.0 109.3
C05 C06 H10 109.5 109.5
C05 C06 H11 109.5 109.5
C05 C06 H12 109.5 109.5
O24 C07 H13 110.0 109.3
O12 C11 N13 122.8 120.0
C11 N13 C14 126.4 120.0
C11 N13 H19 116.8 120.0
N13 C14 C19 123.2 120.1
C41 C40 H29 119.2 120.0
C25 C26 N27 118.2 120.1
C25 C26 C38 121.9 119.8
C15 C14 C19 119.6 119.9
C15 C16 C17 119.9 120.1
C16 C15 H1 119.8 120.0
C15 C16 H2 120.0 120.0
C14 C19 C18 120.1 119.9
C14 C19 H21 119.9 120.0
C40 C39 H28 120.3 119.8
C16 C17 C18 120.3 120.2
C16 C17 C20 118.3 119.9
C17 C16 H2 120.0 120.0
C19 C18 H20 120.2 119.9
N27 C26 C38 119.9 120.1
C26 N27 S28 119.9 120.0
C26 N27 H22 106.8 120.0
C26 C38 H27 120.3 119.9
C37 C36 H25 120.1 120.0
C36 C37 H26 120.3 120.0
N27 S28 O30 110.6 106.4
N27 S28 O29 112.9 106.4
S28 N27 H22 106.8 120.0
C39 C38 H27 120.3 119.9
C34 C33 H24 120.2 120.0
C18 C17 C20 121.3 119.9
C17 C18 H20 120.2 120.0
C17 C20 F23 108.4 109.5
C17 C20 F22 110.5 109.5
C31 C32 H23 120.2 120.0
O29 S28 O30 104.8 123.2
C33 C32 H23 120.3 119.9
F21 C20 F23 109.4 109.5
F21 C20 F22 110.5 109.5
F22 C20 F23 109.0 109.5
H3 C01 H4 109.4 109.5
H3 C01 H5 109.5 109.5
H4 C01 H5 109.5 109.4
H7 C04 H8 109.5 109.5
H10 C06 H11 109.5 109.4
H10 C06 H12 109.4 109.5
H11 C06 H12 109.5 109.4
H14 C08 H15 109.5 109.5
H16 C10 H17 109.4 109.5
H16 C10 H18 109.5 109.5
H17 C10 H18 109.5 109.5

Torsion Angles for 3M6

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N03 C02 C01 C44 122.3 120.0
C01 C02 C44 O45 184.0 280.0
C44 C02 C01 H6 118.3 120.0
C01 C02 N03 C04 110.1 120.0
C01 C02 N03 C42 290.9 300.0
N03 C02 C01 H6 240.6 240.0
H3 C01 C02 H4 240.0 240.0
H3 C01 C02 H5 120.0 120.0
H4 C01 C02 H5 240.0 240.0
O46 C44 C02 H6 123.2 220.0
O46 C44 O45 H30 360.0 0.0
C01 C02 C44 N03 122.1 120.0
C44 C02 C01 H3 180.0 60.0
C44 C02 C01 H4 300.0 180.0
C44 C02 C01 H5 60.0 300.0
C01 C02 C44 H6 241.6 239.9
C44 C02 N03 C04 232.3 240.0
C44 C02 N03 C42 53.1 60.0
N03 C02 C44 H6 119.5 119.9
C02 C44 O45 H30 180.7 180.0
C01 C02 N03 C44 237.8 240.0
N03 C02 C01 H3 302.3 180.0
N03 C02 C01 H4 62.3 300.0
N03 C02 C01 H5 182.3 60.0
C01 C02 N03 H6 118.9 120.0
N03 C02 C44 O45 61.9 160.0
C44 C02 N03 H6 241.1 240.0
C04 N03 C02 C42 179.2 179.9
C02 N03 C04 H7 32.9 198.2
C02 N03 C04 H8 152.5 318.3
C02 N03 C42 C41 179.6 184.2
O45 C44 C02 H6 302.5 40.1
C10 N09 C08 H14 216.0 144.1
C10 N09 C08 H15 335.7 24.1
C10 N09 C11 N13 0.3 5.6
C10 N09 C11 O12 179.6 185.9
N09 C08 C07 O24 58.7 72.2
N09 C08 C07 H13 299.0 312.6
C08 N09 C11 N13 180.5 185.6
C08 N09 C11 O12 359.8 6.0
H14 C08 N09 H15 240.3 120.0
C05 C07 C08 O24 122.0 120.8
C08 C07 C05 H9 59.1 63.5
C05 C07 C08 H13 241.8 240.4
O24 C07 C08 H13 119.8 119.6
O12 C11 N09 N13 179.3 180.3
N09 C11 N13 C14 181.7 180.7
N09 C11 N13 H19 1.7 0.7
C04 N03 C02 C44 232.3 240.0
C02 N03 C04 C42 180.8 180.1
C04 N03 C02 H6 351.2 359.9
C04 N03 C42 C41 0.4 4.3
C05 C04 N03 H7 239.8 240.1
C05 C04 N03 H8 120.2 120.0
H7 C04 N03 H8 240.3 239.9
C42 N03 C02 C44 53.1 60.0
C02 N03 C42 C04 179.2 179.9
C42 N03 C02 H6 172.0 180.0
C42 N03 C04 H7 212.1 18.2
C42 N03 C04 H8 331.7 138.3
C08 C07 C05 O24 239.8 239.7
C08 C07 C05 H13 118.3 119.6
C07 C05 C04 H7 185.7 333.4
C07 C05 C04 H8 66.0 213.2
C06 C05 C07 H9 240.9 240.3
C07 C05 C06 H10 180.0 60.1
C07 C05 C06 H11 300.0 180.0
C07 C05 C06 H12 60.0 300.0
O24 C07 C05 H13 238.5 239.8
C05 C04 N03 C42 91.9 258.3
N03 C04 C05 H7 120.2 119.9
N03 C04 C05 H8 239.8 240.1
H7 C04 C05 H8 119.7 120.2
C06 C05 C07 O24 60.2 64.1
C07 C05 C06 H9 118.8 119.7
C06 C05 C07 H13 181.7 184.3
C06 C05 C04 H7 64.4 213.2
C06 C05 C04 H8 304.7 93.0
H10 C06 C05 H11 240.0 240.1
H10 C06 C05 H12 120.0 120.1
H11 C06 C05 H12 240.0 240.1
C08 C07 O24 H13 240.9 240.4
O24 C07 C05 H9 179.3 183.8
C05 C07 O24 H13 120.8 120.2
C42 C41 C40 H29 359.2 358.9
N09 C11 N13 O12 179.3 180.3
C11 N13 C14 C19 2.7 205.3
N09 C11 O12 N13 180.7 179.7
O12 C11 N13 C14 2.4 0.4
O12 C11 N13 H19 182.5 180.4
C11 N13 C14 H19 180.0 180.0
C15 C14 N13 C19 177.5 179.7
N13 C14 C19 C18 178.5 179.7
N13 C14 C19 H21 358.5 359.7
O24 C25 C26 N27 358.8 359.5
O24 C25 C26 C38 179.7 179.5
N03 C42 C41 C40 135.4 238.6
C41 C40 C39 H28 179.5 180.1
N27 C26 C25 C38 179.1 180.0
C25 C26 N27 S28 120.6 120.3
C25 C26 N27 H22 242.1 300.3
C25 C26 C38 H27 179.6 179.8
C11 N13 C14 C15 180.2 25.0
N13 C14 C15 C19 182.4 180.3
C15 C14 C19 C18 1.1 360.0
C15 C14 C19 H21 181.1 180.0
C16 C15 C14 C19 358.9 360.0
C15 C16 C17 C18 360.0 359.9
C15 C16 C17 C20 179.9 180.0
C17 C16 C15 H2 180.0 180.1
C14 C19 C18 H20 179.4 180.1
C40 C39 C38 H27 180.1 180.2
C17 C16 C15 H1 180.5 180.0
C15 C16 C17 H2 180.0 179.9
C18 C17 C16 C20 180.1 180.0
C16 C17 C18 H20 180.0 180.0
C16 C17 C20 F23 308.9 90.0
C16 C17 C20 F22 189.4 329.9
C14 C19 C18 H21 180.0 180.0
C19 C18 C17 C20 180.1 180.0
C17 C18 C19 H20 180.0 180.0
C25 C26 N27 C38 180.9 180.0
N27 C26 C38 H27 0.5 359.8
C26 N27 S28 O30 184.5 305.9
C26 N27 S28 O29 67.5 173.0
S28 N27 C26 H22 238.5 180.0
C25 C26 C38 N27 179.1 180.0
C38 C26 N27 S28 299.8 300.3
C38 C26 N27 H22 61.3 120.3
C39 C38 C26 H27 180.0 180.0
C36 C34 C33 H24 180.3 180.1
S28 N27 C26 C38 299.8 300.3
C26 N27 S28 H22 121.5 180.0
O29 S28 N27 O30 242.9 227.1
C37 C31 C32 H23 179.3 180.3
C26 C38 C39 H27 180.0 180.0
F35 C34 C33 H24 359.8 0.1
C34 C33 C32 H23 180.2 180.0
C14 C19 C18 C17 359.4 0.0
C16 C17 C18 C20 179.9 180.0
C18 C17 C16 H2 180.0 180.0
C19 C18 C17 H20 180.0 180.0
C18 C17 C20 F23 128.8 270.0
C18 C17 C20 F22 9.4 150.0
C16 C17 C20 C18 180.1 180.0
C20 C17 C16 H2 359.9 0.1
C20 C17 C18 H20 0.1 359.9
F21 C20 C17 F23 119.0 120.0
F21 C20 C17 F22 238.4 240.0
F22 C20 C17 F23 240.6 240.0
C31 S28 N27 H22 185.4 239.5
C33 C32 C31 H23 180.0 180.0
N27 S28 O30 O29 238.1 237.0
O30 S28 N27 H22 63.1 125.9
N27 S28 O29 O30 120.4 123.0
O29 S28 N27 H22 306.0 353.0
C31 C32 C33 H23 180.0 180.0
C17 C20 F21 F23 241.6 240.0
C17 C20 F21 F22 121.6 120.0
F22 C20 F21 F23 120.1 120.0
C17 C20 F23 F22 239.7 240.0
F21 C20 F23 F22 121.0 120.0
C17 C20 F22 F23 119.1 120.0
F21 C20 F22 F23 239.7 240.0
H1 C15 C14 C19 178.9 180.1
H1 C15 C16 C17 180.5 180.0
H1 C15 C16 H2 0.6 359.9
C15 C16 H2 C17 180.0 180.1
H2 C16 C15 H1 0.6 359.9
H2 C16 C17 C18 180.0 180.0
H2 C16 C17 C20 359.9 0.1
H3 C01 C02 C44 180.0 60.0
H3 C01 C02 N03 302.3 180.0
C02 C01 H3 H4 120.0 120.0
C02 C01 H3 H5 240.0 240.0
H3 C01 C02 H6 61.7 300.0
H4 C01 H3 H5 120.0 120.0
H4 C01 C02 C44 300.0 180.0
H4 C01 C02 N03 62.3 300.0
C02 C01 H4 H3 240.0 240.0
C02 C01 H4 H5 120.0 120.0
H4 C01 C02 H6 181.7 60.0
H3 C01 H4 H5 240.0 240.0
H5 C01 C02 C44 60.0 300.0
H5 C01 C02 N03 182.3 60.0
C02 C01 H5 H3 120.0 120.0
C02 C01 H5 H4 240.0 240.0
H5 C01 C02 H6 301.7 180.0
H3 C01 H5 H4 120.0 120.0
C01 C02 H6 C44 119.7 120.0
C01 C02 H6 N03 240.0 240.0
H6 C02 C01 H3 61.7 300.0
H6 C02 C01 H4 181.7 60.0
H6 C02 C01 H5 301.7 180.0
N03 C02 H6 C44 239.7 240.1
H6 C02 C44 O45 302.5 40.1
H6 C02 N03 C04 351.2 359.9
H6 C02 N03 C42 172.0 180.0
H7 C04 N03 C42 212.1 18.2
N03 C04 H7 H8 119.5 120.1
C05 C04 H7 H8 240.5 239.8
H8 C04 N03 C42 331.7 138.3
N03 C04 H8 H7 240.5 239.9
C05 C04 H8 H7 119.5 120.2
C06 C05 H9 C07 119.4 119.7
H9 C05 C07 O24 179.3 183.8
H9 C05 C07 H13 300.8 303.9
H9 C05 C04 H7 305.7 93.5
H9 C05 C04 H8 186.0 333.4
H9 C05 C06 H10 61.1 300.3
H9 C05 C06 H11 181.2 60.3
H9 C05 C06 H12 301.2 180.2
H10 C06 C05 C07 180.0 60.1
H10 C06 C05 H9 61.1 300.3
C05 C06 H10 H11 120.0 120.0
C05 C06 H10 H12 240.0 239.9
H11 C06 H10 H12 120.0 120.0
H11 C06 C05 C07 300.0 180.0
H11 C06 C05 H9 181.2 60.3
C05 C06 H11 H10 239.9 240.0
C05 C06 H11 H12 120.0 120.0
H10 C06 H11 H12 240.1 240.0
H12 C06 C05 C07 60.0 300.0
H12 C06 C05 H9 301.2 180.2
C05 C06 H12 H10 120.0 120.1
C05 C06 H12 H11 240.0 240.0
H10 C06 H12 H11 120.0 120.0
C08 C07 H13 O24 119.0 119.6
C05 C07 H13 O24 237.3 239.3
H13 C07 C05 H9 300.8 303.9
N09 C08 H14 H15 119.5 240.0
H14 C08 C07 O24 298.6 192.2
H14 C08 C07 H13 178.8 72.7
N09 C08 H15 H14 240.5 120.0
H15 C08 C07 O24 178.9 312.2
H15 C08 C07 H13 59.1 192.6
H17 C10 H16 H18 120.0 120.0
H16 C10 H17 H18 240.0 240.0
H16 C10 H18 H17 119.9 120.0
C11 N13 H19 C14 180.0 180.0
H19 N13 C14 C19 182.7 25.3
H20 C18 C17 C20 0.1 359.9
C14 C19 H21 C18 180.0 180.0
H21 C19 C18 H20 359.4 0.0
H22 N27 C26 C38 61.3 120.3
C26 N27 H22 S28 230.5 180.0
H22 N27 S28 O30 63.1 125.9
H22 N27 S28 O29 306.0 353.0
H24 C33 C32 H23 0.2 359.9
H25 C36 C37 H26 359.8 359.5
H26 C37 C36 H25 359.8 359.5
H28 C39 C38 H27 0.1 0.2
H29 C40 C39 H28 359.5 0.1