Atom Nomenclature for 3LL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3LL

Atom Name (V3) Atom Name (V2)
C4 C4
C14 C14
C5 C5
C6 C6
C8 C8
C9 C9
C10 C10
C12 C12
C13 C13
C3 C3
C30 C30
O31 O31
C32 C32
C23 C23
C33 C33
C22 C22
C16 C16
N11 N11
O7 O7
C17 C17
O18 O18
C19 C19
N20 N20
N21 N21
C2 C2
C1 C1
C15 C15
C28 C28
C27 C27
C26 C26
N25 N25
C24 C24
F29 F29
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19