Atom Nomenclature for 3LI

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3LI

Atom Name (V3) Atom Name (V2)
C01 C01
N02 N02
C03 C03
O04 O04
C05 C05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
C11 C11
N12 N12
C13 C13
N14 N14
C15 C15
N16 N16
C17 C17
N18 N18
N19 N19
C20 C20
C21 C21
N22 N22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
CL31 CL31
N32 N32
C33 C33
S34 S34
C35 C35
C36 C36
C37 C37
O38 O38
N39 N39
C40 C40
C41 C41
O42 O42
N43 N43
O44 O44
H01 H01
H01A H01A
H01B H01B
HN02 HN02
H06 H06
H07 H07
H08 H08
H10 H10
H10A H10A
H10B H10B
HN12 HN12
H20 H20
H20A H20A
H21 H21
H21A H21A
H23 H23
H23A H23A
H24 H24
H24A H24A
H26 H26
H27 H27
H28 H28
H29 H29
H33 H33
H33A H33A
H35 H35
H35A H35A
H36 H36
HN39 HN39
H40 H40
H40A H40A
HN43 HN43
HO44 HO44