Atom Nomenclature for 3LH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3LH

Atom Name (V3) Atom Name (V2)
CAR C1
CAT C2
CAZ C3
OAD O1
NAX N1
CBE C4
CAP C5
CBA C6
CAA C7
CAG C8
CAH C9
CBD C10
NBL N2
CBJ C11
CBI C12
CAQ C13
CBF C14
OAE O2
CAJ C15
CAL C16
CBG C17
CAN C18
NAW N3
CBH C19
CAK C20
CAI C21
CBB C22
CBC C23
CAM C24
NAV N4
NAY N5
CAO C25
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21