Atom Nomenclature for 3JZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3JZ

Atom Name (V3) Atom Name (V2)
C35 C35
C34 C34
N2 N2
C7 C7
C6 C6
C13 C13
C20 C20
C21 C21
C8 C8
C18 C18
C16 C16
C19 C19
O33 O33
S31 S31
O32 O32
N30 N30
C17 C17
C1 C1
C12 C12
N10 N10
C5 C5
F29 F29
F28 F28
F27 F27
N4 N4
C3 C3
N9 N9
C11 C11
C14 C14
C22 C22
C23 C23
C15 C15
N25 N25
C24 C24
O26 O26
H35 H35
H35A H35A
H35B H35B
H34 H34
H34A H34A
H34B H34B
H7 H7
H18 H18
H16 H16
H19 H19
H17 H17
H1 H1
H12 H12
H12A H12A
HN10 HN10
HN9 HN9
H14 H14
H23 H23
H23A H23A
H15 H15
HN25 HN25