PDB Chemical Component 3JY

Ideal Model

Chemical Description

Name [(1R)-2-methoxy-1-{[(1S,3R)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentyl]oxy}-2-oxoethyl]phosphonic acid
Formula C13 H19 N2 O8 P
Formal charge 0
Molecular weight 362.272 g/mol
Component type NON-POLYMER

Chemical features

Atom count 43
Chiral atom count 3
Chiral atoms C7 C10 C12
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(1R)-2-methoxy-1-{[(1S,3R)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentyl]oxy}-2-oxoethyl]phosphonic acid
Systematic name (OpenEye OEToolkits) [(1R)-2-methoxy-1-[(1S,3R)-3-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]cyclopentyl]oxy-2-oxidanylidene-ethyl]phosphonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) COC(=O)[C@H](O[C@H]1CC[C@H](C1)N2C=C(C)C(=O)NC2=O)[P](O)(O)=O
SMILES (CACTVS) COC(=O)[CH](O[CH]1CC[CH](C1)N2C=C(C)C(=O)NC2=O)[P](O)(O)=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@@H]2CC[C@@H](C2)O[C@@H](C(=O)OC)P(=O)(O)O
InChI descriptor InChI=1S/C13H19N2O8P/c1-7-6-15(13(18)14-10(7)16)8-3-4-9(5-8)23-12(11(17)22-2)24(19,20)21/h6,8-9,12H,3-5H2,1-2H3,(H,14,16,18)(H2,19,20,21)/t8-,9+,12-/m1/s1
InChIKey descriptor VZWKSNLNIFIGPO-VDDIYKPWSA-N

Status Information

Last modified 2015-03-06
Created 2014-08-28
Release status REL
Model PDB code 4R5P
Processing site RCSB