Atom Nomenclature for 3JW

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3JW

Atom Name (V3) Atom Name (V2)
C4 C1
C5 C2
C6 C3
N1 N1
N3 N2
CAA C4
CAB C5
SAC S1
OAY O1
OAZ O2
NAD N3
CAJ C6
CAE C7
CAF C8
CAG C9
CAH C10
NAI N4
NAK N5
CAL C11
NAO N6
CAN C12
CAM C13
C2 C14
CAR C15
CAS C16
NAT N7
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17