PDB Chemical Component 3JN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3JN
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O15 |
C11 |
1.256 |
1.208 |
O12 |
C11 |
1.244 |
1.343 |
C11 |
C10 |
1.509 |
1.507 |
C2 |
C3 |
1.381 |
1.380 |
C2 |
C7 |
1.381 |
1.384 |
C3 |
C4 |
1.407 |
1.397 |
C7 |
C6 |
1.390 |
1.392 |
C9 |
C10 |
1.493 |
1.507 |
C9 |
C1 |
1.317 |
1.327 |
C4 |
C1 |
1.480 |
1.476 |
C4 |
C5 |
1.387 |
1.404 |
O14 |
C12 |
1.254 |
1.214 |
C6 |
C5 |
1.397 |
1.408 |
C6 |
C12 |
1.493 |
1.478 |
C5 |
C8 |
1.515 |
1.475 |
C12 |
O13 |
1.251 |
1.347 |
O9 |
C8 |
1.258 |
1.215 |
C8 |
O10 |
1.254 |
1.347 |
O12 |
H1 |
0.950 |
0.967 |
C10 |
H2 |
1.100 |
1.090 |
C10 |
H3 |
1.100 |
1.090 |
C9 |
H4 |
1.080 |
1.080 |
C1 |
H5 |
1.080 |
1.080 |
C3 |
H6 |
1.079 |
1.079 |
C2 |
H7 |
1.080 |
1.079 |
C7 |
H8 |
1.080 |
1.080 |
O10 |
H9 |
0.951 |
0.967 |
O13 |
H10 |
0.950 |
0.967 |
Bond Angles for 3JN
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O15 |
C11 |
C10 |
119.8 |
120.0 |
O12 |
C11 |
C10 |
116.7 |
120.0 |
C11 |
C10 |
H2 |
109.9 |
109.4 |
C11 |
C10 |
H3 |
109.9 |
109.5 |
C2 |
C3 |
H6 |
119.7 |
119.8 |
C2 |
C7 |
C6 |
120.1 |
120.3 |
C7 |
C2 |
H7 |
120.3 |
119.7 |
C2 |
C7 |
H8 |
119.9 |
119.9 |
C3 |
C4 |
C5 |
120.2 |
119.7 |
C7 |
C6 |
C5 |
121.2 |
119.7 |
C7 |
C6 |
C12 |
117.0 |
120.2 |
C6 |
C7 |
H8 |
119.9 |
119.8 |
C9 |
C10 |
H2 |
109.9 |
109.5 |
C9 |
C10 |
H3 |
109.9 |
109.5 |
C1 |
C9 |
H4 |
119.4 |
120.0 |
C9 |
C1 |
H5 |
120.3 |
120.0 |
C4 |
C1 |
H5 |
120.3 |
120.0 |
C4 |
C5 |
C8 |
118.3 |
120.3 |
O14 |
C12 |
O13 |
123.4 |
120.0 |
C6 |
C12 |
O13 |
118.3 |
120.0 |
C5 |
C8 |
O10 |
117.5 |
120.0 |
C12 |
O13 |
H10 |
109.5 |
117.0 |
C8 |
O10 |
H9 |
109.5 |
117.0 |
H2 |
C10 |
H3 |
109.4 |
109.5 |
Torsion Angles for 3JN
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O12 |
C11 |
O15 |
C10 |
179.2 |
180.3 |
O15 |
C11 |
C10 |
H2 |
119.4 |
120.0 |
O15 |
C11 |
C10 |
H3 |
239.9 |
240.0 |
O15 |
C11 |
O12 |
C10 |
180.8 |
179.7 |
O12 |
C11 |
C10 |
H2 |
300.1 |
299.7 |
O12 |
C11 |
C10 |
H3 |
60.6 |
59.7 |
C9 |
C10 |
C11 |
H2 |
240.3 |
240.1 |
C9 |
C10 |
C11 |
H3 |
119.7 |
120.0 |
H2 |
C10 |
C11 |
H3 |
239.5 |
240.0 |
C2 |
C3 |
C4 |
C5 |
358.8 |
0.3 |
C7 |
C2 |
C3 |
H6 |
180.0 |
180.0 |
C2 |
C7 |
C6 |
C5 |
0.0 |
359.7 |
C2 |
C7 |
C6 |
C12 |
180.2 |
180.0 |
C6 |
C7 |
C2 |
H8 |
180.0 |
180.0 |
C3 |
C4 |
C1 |
H5 |
186.4 |
180.3 |
C3 |
C4 |
C5 |
C8 |
179.4 |
179.8 |
C6 |
C7 |
C2 |
H7 |
180.6 |
180.0 |
C2 |
C7 |
C6 |
H8 |
180.0 |
180.0 |
C7 |
C6 |
C12 |
O13 |
104.3 |
0.0 |
C11 |
C10 |
C9 |
H2 |
119.7 |
119.9 |
C11 |
C10 |
C9 |
H3 |
240.3 |
240.0 |
H2 |
C10 |
C9 |
H3 |
120.5 |
120.1 |
C1 |
C9 |
C10 |
H2 |
91.6 |
5.1 |
C1 |
C9 |
C10 |
H3 |
331.1 |
245.0 |
C4 |
C1 |
C9 |
H5 |
180.0 |
180.0 |
C4 |
C1 |
C9 |
H4 |
358.0 |
0.0 |
C9 |
C1 |
C4 |
H5 |
180.0 |
180.0 |
C7 |
C6 |
C5 |
C4 |
358.8 |
0.6 |
C5 |
C4 |
C1 |
H5 |
9.3 |
0.0 |
C4 |
C5 |
C8 |
O10 |
284.5 |
270.1 |
C6 |
C12 |
O14 |
O13 |
178.8 |
180.1 |
O14 |
C12 |
O13 |
H10 |
0.0 |
0.1 |
C7 |
C6 |
C5 |
C12 |
180.1 |
180.3 |
C5 |
C6 |
C7 |
H8 |
180.0 |
179.7 |
C7 |
C6 |
C12 |
C5 |
179.9 |
179.7 |
C12 |
C6 |
C7 |
H8 |
0.1 |
360.0 |
O14 |
C12 |
C6 |
O13 |
181.1 |
179.9 |
C6 |
C12 |
O13 |
H10 |
181.2 |
180.0 |
C7 |
C6 |
C5 |
C8 |
181.3 |
180.3 |
C5 |
C8 |
O10 |
H9 |
178.0 |
180.0 |
O9 |
C8 |
O10 |
H9 |
360.0 |
0.1 |
H1 |
O12 |
C11 |
C10 |
179.3 |
180.3 |
C11 |
C10 |
H2 |
H3 |
120.8 |
120.0 |
C9 |
C10 |
H2 |
H3 |
239.2 |
240.0 |
C11 |
C10 |
H3 |
H2 |
239.2 |
240.0 |
C9 |
C10 |
H3 |
H2 |
120.8 |
120.0 |
H4 |
C9 |
C10 |
H2 |
271.6 |
185.0 |
H4 |
C9 |
C10 |
H3 |
151.1 |
65.0 |
H4 |
C9 |
C1 |
H5 |
178.0 |
180.0 |
H5 |
C1 |
C9 |
H4 |
178.0 |
180.0 |
H6 |
C3 |
C4 |
C5 |
178.8 |
180.3 |
H7 |
C2 |
C3 |
H6 |
359.9 |
360.0 |
H7 |
C2 |
C7 |
C6 |
180.6 |
180.0 |
H7 |
C2 |
C7 |
H8 |
0.7 |
0.0 |
C2 |
C7 |
H8 |
C6 |
180.0 |
180.0 |
H8 |
C7 |
C2 |
H7 |
0.7 |
0.0 |
H8 |
C7 |
C6 |
C5 |
180.0 |
179.7 |
H8 |
C7 |
C6 |
C12 |
0.1 |
360.0 |