PDB Chemical Component 3JA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3JA
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N2 |
C4 |
1.351 |
1.307 |
N2 |
N1 |
1.346 |
1.401 |
C4 |
C3 |
1.405 |
1.408 |
C1 |
N1 |
1.481 |
1.464 |
N1 |
C2 |
1.367 |
1.350 |
C13 |
O1 |
1.412 |
1.430 |
C13 |
C14 |
1.570 |
1.531 |
C3 |
C2 |
1.409 |
1.364 |
C3 |
C5 |
1.424 |
1.486 |
O1 |
C12 |
1.432 |
1.430 |
C14 |
N6 |
1.520 |
1.470 |
C5 |
C6 |
1.401 |
1.353 |
C5 |
C8 |
1.434 |
1.468 |
C6 |
N3 |
1.377 |
1.371 |
C12 |
C11 |
1.550 |
1.531 |
N6 |
C11 |
1.528 |
1.471 |
N6 |
C9 |
1.434 |
1.383 |
C8 |
C9 |
1.464 |
1.402 |
C8 |
C7 |
1.422 |
1.406 |
N3 |
C7 |
1.394 |
1.368 |
C9 |
N4 |
1.357 |
1.331 |
C7 |
N5 |
1.362 |
1.333 |
N4 |
C10 |
1.367 |
1.321 |
N5 |
C10 |
1.350 |
1.316 |
N3 |
H1 |
1.000 |
0.970 |
C4 |
H2 |
1.080 |
1.081 |
C6 |
H3 |
1.080 |
1.080 |
C13 |
H4 |
1.100 |
1.090 |
C13 |
H5 |
1.100 |
1.090 |
C1 |
H6 |
1.100 |
1.090 |
C1 |
H7 |
1.100 |
1.090 |
C1 |
H8 |
1.100 |
1.090 |
C2 |
H9 |
1.080 |
1.080 |
C10 |
H10 |
1.080 |
1.080 |
C11 |
H11 |
1.100 |
1.090 |
C11 |
H12 |
1.100 |
1.090 |
C12 |
H13 |
1.100 |
1.090 |
C12 |
H14 |
1.100 |
1.090 |
C14 |
H15 |
1.100 |
1.090 |
C14 |
H16 |
1.100 |
1.089 |
Bond Angles for 3JA
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
C4 |
C3 |
109.4 |
108.2 |
N2 |
C4 |
H2 |
125.3 |
125.9 |
N2 |
N1 |
C1 |
122.8 |
125.9 |
N2 |
N1 |
C2 |
111.9 |
108.2 |
C4 |
C3 |
C2 |
106.2 |
107.6 |
C4 |
C3 |
C5 |
129.5 |
126.2 |
C3 |
C4 |
H2 |
125.3 |
125.9 |
C1 |
N1 |
C2 |
125.3 |
126.0 |
N1 |
C1 |
H6 |
109.5 |
109.5 |
N1 |
C1 |
H7 |
109.4 |
109.5 |
N1 |
C1 |
H8 |
109.5 |
109.5 |
N1 |
C2 |
H9 |
127.2 |
126.2 |
O1 |
C13 |
C14 |
109.8 |
109.3 |
C13 |
O1 |
C12 |
117.3 |
113.7 |
O1 |
C13 |
H4 |
109.4 |
109.5 |
O1 |
C13 |
H5 |
109.4 |
109.5 |
C13 |
C14 |
N6 |
105.7 |
109.3 |
C14 |
C13 |
H4 |
109.4 |
109.4 |
C14 |
C13 |
H5 |
109.4 |
109.5 |
C13 |
C14 |
H15 |
110.4 |
109.5 |
C13 |
C14 |
H16 |
110.4 |
109.5 |
C3 |
C2 |
H9 |
127.3 |
126.2 |
O1 |
C12 |
H13 |
109.2 |
109.5 |
O1 |
C12 |
H14 |
109.2 |
109.6 |
C5 |
C6 |
H3 |
125.9 |
125.2 |
C6 |
N3 |
H1 |
125.5 |
124.9 |
C12 |
C11 |
H11 |
110.4 |
109.5 |
C12 |
C11 |
H12 |
110.4 |
109.6 |
N6 |
C11 |
H11 |
110.4 |
109.4 |
N6 |
C11 |
H12 |
110.4 |
109.5 |
C8 |
C9 |
N4 |
121.4 |
118.3 |
C8 |
C7 |
N5 |
125.4 |
118.5 |
N3 |
C7 |
N5 |
125.6 |
134.1 |
C7 |
N3 |
H1 |
125.5 |
124.9 |
C9 |
N4 |
C10 |
117.8 |
121.0 |
C7 |
N5 |
C10 |
115.1 |
120.7 |
N5 |
C10 |
N4 |
126.6 |
122.7 |
N4 |
C10 |
H10 |
116.7 |
118.6 |
N5 |
C10 |
H10 |
116.7 |
118.7 |
H4 |
C13 |
H5 |
109.5 |
109.6 |
H6 |
C1 |
H7 |
109.5 |
109.4 |
H6 |
C1 |
H8 |
109.5 |
109.5 |
H7 |
C1 |
H8 |
109.5 |
109.4 |
H11 |
C11 |
H12 |
109.5 |
109.5 |
H13 |
C12 |
H14 |
109.4 |
109.5 |
H15 |
C14 |
H16 |
109.5 |
109.6 |
Torsion Angles for 3JA
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N2 |
C4 |
C3 |
C2 |
359.2 |
360.0 |
N2 |
C4 |
C3 |
C5 |
176.6 |
179.7 |
C3 |
C4 |
N2 |
H2 |
180.0 |
180.3 |
N1 |
N2 |
C4 |
C3 |
0.0 |
0.0 |
N1 |
N2 |
C4 |
H2 |
180.0 |
179.7 |
C1 |
N1 |
N2 |
C2 |
181.5 |
180.0 |
N2 |
N1 |
C1 |
H6 |
0.0 |
90.0 |
N2 |
N1 |
C1 |
H7 |
120.0 |
209.9 |
N2 |
N1 |
C1 |
H8 |
240.0 |
329.9 |
N2 |
N1 |
C2 |
H9 |
178.7 |
179.9 |
N2 |
C4 |
C3 |
H2 |
180.0 |
179.7 |
C4 |
C3 |
C2 |
H9 |
181.3 |
180.1 |
N2 |
N1 |
C1 |
C2 |
178.3 |
180.0 |
C1 |
N1 |
C2 |
H9 |
357.2 |
359.9 |
H6 |
C1 |
N1 |
H7 |
240.0 |
240.0 |
H6 |
C1 |
N1 |
H8 |
120.0 |
120.1 |
H7 |
C1 |
N1 |
H8 |
240.0 |
240.0 |
N2 |
N1 |
C2 |
C1 |
181.5 |
180.0 |
C4 |
C3 |
C2 |
N1 |
1.2 |
360.0 |
C2 |
N1 |
C1 |
H6 |
181.7 |
270.0 |
C2 |
N1 |
C1 |
H7 |
301.7 |
30.0 |
C2 |
N1 |
C1 |
H8 |
61.6 |
149.9 |
C3 |
C2 |
N1 |
H9 |
180.0 |
180.1 |
O1 |
C13 |
C14 |
N6 |
303.5 |
303.2 |
C14 |
C13 |
O1 |
H4 |
240.0 |
240.1 |
C14 |
C13 |
O1 |
H5 |
120.0 |
119.9 |
O1 |
C13 |
C14 |
H15 |
62.9 |
63.0 |
O1 |
C13 |
C14 |
H16 |
184.1 |
183.2 |
C13 |
O1 |
C12 |
H13 |
63.1 |
181.4 |
C13 |
O1 |
C12 |
H14 |
182.8 |
61.2 |
H4 |
C13 |
O1 |
H5 |
240.0 |
239.8 |
C14 |
C13 |
O1 |
C12 |
57.2 |
58.7 |
O1 |
C13 |
C14 |
H4 |
120.0 |
119.9 |
O1 |
C13 |
C14 |
H5 |
240.0 |
240.0 |
H4 |
C13 |
C14 |
H5 |
119.9 |
120.1 |
H15 |
C14 |
C13 |
H16 |
238.8 |
239.8 |
C4 |
C3 |
C2 |
C5 |
177.6 |
179.8 |
C2 |
C3 |
C4 |
H2 |
179.2 |
180.3 |
N1 |
C2 |
C3 |
H9 |
180.0 |
179.9 |
C4 |
C3 |
C5 |
C2 |
183.0 |
180.3 |
C5 |
C3 |
C4 |
H2 |
356.6 |
0.0 |
C5 |
C3 |
C2 |
H9 |
3.7 |
0.3 |
C3 |
C5 |
C6 |
H3 |
352.7 |
359.9 |
C12 |
O1 |
C13 |
C14 |
57.2 |
58.7 |
C12 |
O1 |
C13 |
H4 |
177.2 |
178.5 |
C12 |
O1 |
C13 |
H5 |
297.2 |
298.8 |
O1 |
C12 |
C11 |
H11 |
174.6 |
296.9 |
O1 |
C12 |
C11 |
H12 |
295.8 |
176.8 |
H13 |
C12 |
O1 |
H14 |
240.3 |
120.2 |
N6 |
C14 |
C13 |
H4 |
183.4 |
183.3 |
N6 |
C14 |
C13 |
H5 |
63.5 |
63.1 |
C13 |
C14 |
N6 |
H15 |
119.4 |
119.9 |
C13 |
C14 |
N6 |
H16 |
240.6 |
240.0 |
C14 |
N6 |
C11 |
H11 |
178.5 |
61.4 |
C14 |
N6 |
C11 |
H12 |
57.3 |
181.4 |
C4 |
C3 |
C5 |
C6 |
49.2 |
124.6 |
C5 |
C6 |
N3 |
H1 |
180.9 |
180.3 |
C4 |
C3 |
C5 |
C8 |
221.6 |
304.8 |
C8 |
C5 |
C6 |
H3 |
179.0 |
179.7 |
C5 |
C8 |
C9 |
N4 |
186.6 |
180.5 |
C6 |
N3 |
C7 |
N5 |
182.5 |
180.3 |
C7 |
N3 |
C6 |
H1 |
180.0 |
179.7 |
C13 |
O1 |
C12 |
C11 |
303.0 |
301.3 |
N6 |
C11 |
C12 |
H11 |
240.6 |
119.9 |
N6 |
C11 |
C12 |
H12 |
119.4 |
240.0 |
H11 |
C11 |
C12 |
H12 |
238.8 |
120.1 |
C13 |
C14 |
N6 |
C11 |
62.5 |
58.6 |
C12 |
C11 |
N6 |
H11 |
119.4 |
240.1 |
C12 |
C11 |
N6 |
H12 |
240.6 |
120.0 |
H11 |
C11 |
N6 |
H12 |
121.2 |
240.0 |
C9 |
C8 |
C7 |
N5 |
359.9 |
0.0 |
C8 |
C9 |
N4 |
C10 |
357.8 |
0.1 |
N3 |
C7 |
C8 |
N5 |
182.9 |
180.0 |
C8 |
C7 |
N3 |
H1 |
179.6 |
180.0 |
C8 |
C7 |
N5 |
C10 |
358.8 |
0.0 |
C6 |
N3 |
C7 |
H1 |
180.0 |
180.3 |
C8 |
C7 |
N3 |
N5 |
177.1 |
180.0 |
N3 |
C7 |
N5 |
C10 |
175.4 |
180.0 |
N5 |
C10 |
N4 |
C9 |
0.8 |
360.0 |
C9 |
N4 |
C10 |
H10 |
180.8 |
179.9 |
N5 |
C7 |
N3 |
H1 |
2.5 |
360.0 |
C7 |
N5 |
C10 |
N4 |
0.9 |
360.0 |
C7 |
N5 |
C10 |
H10 |
180.9 |
180.0 |
N5 |
C10 |
N4 |
H10 |
180.0 |
180.0 |
C9 |
N4 |
C10 |
N5 |
0.8 |
360.0 |
N4 |
C10 |
N5 |
H10 |
180.0 |
180.0 |
H1 |
N3 |
C7 |
N5 |
2.5 |
360.0 |
N2 |
C4 |
H2 |
C3 |
180.0 |
180.4 |
H2 |
C4 |
C3 |
C2 |
179.2 |
180.3 |
H2 |
C4 |
C3 |
C5 |
356.6 |
0.0 |
H3 |
C6 |
N3 |
H1 |
0.9 |
0.3 |
O1 |
C13 |
H4 |
C14 |
239.7 |
240.2 |
H4 |
C13 |
O1 |
C12 |
177.2 |
178.5 |
O1 |
C13 |
H4 |
H5 |
119.9 |
120.2 |
H4 |
C13 |
C14 |
N6 |
183.4 |
183.3 |
C14 |
C13 |
H4 |
H5 |
240.2 |
239.9 |
H4 |
C13 |
C14 |
H15 |
302.8 |
303.1 |
H4 |
C13 |
C14 |
H16 |
64.0 |
63.3 |
O1 |
C13 |
H5 |
C14 |
120.3 |
119.8 |
H5 |
C13 |
O1 |
C12 |
297.2 |
298.8 |
O1 |
C13 |
H5 |
H4 |
240.1 |
239.8 |
H5 |
C13 |
C14 |
N6 |
63.5 |
63.1 |
C14 |
C13 |
H5 |
H4 |
119.8 |
120.0 |
H5 |
C13 |
C14 |
H15 |
182.9 |
183.0 |
H5 |
C13 |
C14 |
H16 |
304.1 |
303.2 |
H6 |
C1 |
N1 |
C2 |
181.7 |
270.0 |
N1 |
C1 |
H6 |
H7 |
120.0 |
120.0 |
N1 |
C1 |
H6 |
H8 |
240.0 |
239.9 |
H7 |
C1 |
H6 |
H8 |
120.0 |
120.0 |
H7 |
C1 |
N1 |
C2 |
301.7 |
30.0 |
N1 |
C1 |
H7 |
H6 |
240.0 |
240.0 |
N1 |
C1 |
H7 |
H8 |
120.0 |
120.0 |
H6 |
C1 |
H7 |
H8 |
240.0 |
240.0 |
H8 |
C1 |
N1 |
C2 |
61.6 |
149.9 |
N1 |
C1 |
H8 |
H6 |
120.0 |
120.1 |
N1 |
C1 |
H8 |
H7 |
240.0 |
240.0 |
H6 |
C1 |
H8 |
H7 |
120.0 |
120.0 |
N5 |
C10 |
H10 |
N4 |
180.0 |
180.0 |
C12 |
C11 |
H11 |
H12 |
121.7 |
239.8 |
N6 |
C11 |
H11 |
H12 |
238.3 |
120.0 |
C12 |
C11 |
H12 |
H11 |
238.3 |
120.2 |
N6 |
C11 |
H12 |
H11 |
121.7 |
240.0 |
O1 |
C12 |
H13 |
H14 |
119.5 |
239.8 |
H13 |
C12 |
C11 |
H11 |
54.5 |
56.9 |
H13 |
C12 |
C11 |
H12 |
175.7 |
296.7 |
O1 |
C12 |
H14 |
H13 |
240.5 |
120.2 |
H14 |
C12 |
C11 |
H11 |
294.8 |
177.0 |
H14 |
C12 |
C11 |
H12 |
56.0 |
56.8 |
C13 |
C14 |
H15 |
N6 |
243.5 |
240.2 |
H15 |
C14 |
C13 |
H4 |
302.8 |
303.1 |
H15 |
C14 |
C13 |
H5 |
182.9 |
183.0 |
C13 |
C14 |
H15 |
H16 |
121.8 |
120.2 |
C13 |
C14 |
H16 |
N6 |
116.5 |
119.8 |
H16 |
C14 |
C13 |
H4 |
64.0 |
63.3 |
H16 |
C14 |
C13 |
H5 |
304.1 |
303.2 |
C13 |
C14 |
H16 |
H15 |
238.2 |
239.8 |