PDB Chemical Component 3J9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3J9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C21 |
C9 |
1.549 |
1.528 |
| C19 |
C20 |
1.556 |
1.529 |
| C19 |
C18 |
1.558 |
1.528 |
| C20 |
C9 |
1.543 |
1.534 |
| C9 |
O8 |
1.435 |
1.430 |
| C9 |
C10 |
1.549 |
1.530 |
| C12 |
O13 |
1.435 |
1.447 |
| C12 |
C11 |
1.548 |
1.540 |
| C18 |
O17 |
1.437 |
1.431 |
| O17 |
C10 |
1.432 |
1.431 |
| O8 |
C5 |
1.380 |
1.360 |
| O13 |
C14 |
1.358 |
1.349 |
| C10 |
C11 |
1.544 |
1.515 |
| C5 |
C6 |
1.419 |
1.390 |
| C5 |
C4 |
1.420 |
1.387 |
| C11 |
C4 |
1.535 |
1.501 |
| C11 |
N15 |
1.447 |
1.479 |
| C6 |
C1 |
1.420 |
1.378 |
| C4 |
C3 |
1.418 |
1.384 |
| C26 |
C25 |
1.419 |
1.385 |
| C26 |
C7 |
1.421 |
1.397 |
| C1 |
C2 |
1.423 |
1.393 |
| C3 |
C2 |
1.421 |
1.391 |
| C14 |
N15 |
1.332 |
1.298 |
| C14 |
N16 |
1.335 |
1.373 |
| C2 |
C7 |
1.423 |
1.484 |
| C25 |
C24 |
1.418 |
1.382 |
| C7 |
C22 |
1.420 |
1.396 |
| C24 |
N23 |
1.351 |
1.320 |
| C22 |
N23 |
1.354 |
1.319 |
| C22 |
F27 |
1.337 |
1.351 |
| C1 |
H1 |
1.080 |
1.080 |
| C3 |
H2 |
1.080 |
1.080 |
| C6 |
H3 |
1.079 |
1.080 |
| C10 |
H4 |
1.100 |
1.102 |
| C12 |
H5 |
1.100 |
1.091 |
| C12 |
H6 |
1.100 |
1.087 |
| N16 |
H7 |
1.000 |
0.970 |
| N16 |
H8 |
1.000 |
0.970 |
| C18 |
H9 |
1.100 |
1.091 |
| C18 |
H10 |
1.100 |
1.091 |
| C19 |
H11 |
1.100 |
1.096 |
| C19 |
H12 |
1.100 |
1.088 |
| C20 |
H13 |
1.100 |
1.091 |
| C20 |
H14 |
1.100 |
1.091 |
| C21 |
H15 |
1.100 |
1.090 |
| C21 |
H16 |
1.100 |
1.090 |
| C21 |
H17 |
1.100 |
1.089 |
| C24 |
H18 |
1.080 |
1.080 |
| C25 |
H19 |
1.080 |
1.080 |
| C26 |
H20 |
1.080 |
1.079 |
Bond Angles for 3J9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C20 |
C19 |
H11 |
108.8 |
108.8 |
| C20 |
C19 |
H12 |
108.8 |
110.4 |
| C19 |
C20 |
H13 |
109.0 |
109.5 |
| C19 |
C20 |
H14 |
109.0 |
109.8 |
| C19 |
C18 |
H9 |
109.2 |
109.6 |
| C19 |
C18 |
H10 |
109.2 |
109.5 |
| C9 |
C10 |
C11 |
113.3 |
111.8 |
| C9 |
C10 |
H4 |
106.0 |
108.5 |
| C12 |
O13 |
C14 |
108.3 |
107.3 |
| O13 |
C12 |
H5 |
110.4 |
110.7 |
| O13 |
C12 |
H6 |
110.4 |
110.4 |
| C12 |
C11 |
N15 |
102.1 |
101.9 |
| O17 |
C10 |
H4 |
107.4 |
107.7 |
| O13 |
C14 |
N15 |
112.8 |
113.7 |
| O13 |
C14 |
N16 |
117.1 |
123.0 |
| C10 |
C11 |
N15 |
105.2 |
109.8 |
| C11 |
C10 |
H4 |
106.1 |
109.0 |
| C5 |
C6 |
H3 |
119.7 |
119.9 |
| C11 |
N15 |
C14 |
110.9 |
108.2 |
| C6 |
C1 |
H1 |
120.1 |
120.1 |
| C4 |
C3 |
H2 |
119.4 |
119.8 |
| C26 |
C25 |
H19 |
120.4 |
120.3 |
| C1 |
C2 |
C7 |
121.8 |
120.1 |
| C2 |
C1 |
H1 |
120.1 |
120.1 |
| C3 |
C2 |
C7 |
119.0 |
120.1 |
| N15 |
C14 |
N16 |
128.8 |
123.3 |
| C14 |
N16 |
H7 |
120.0 |
120.0 |
| C14 |
N16 |
H8 |
120.0 |
120.0 |
| C2 |
C7 |
C22 |
124.4 |
120.5 |
| C25 |
C24 |
H18 |
119.0 |
119.5 |
| C7 |
C22 |
N23 |
124.0 |
120.5 |
| C7 |
C22 |
F27 |
120.2 |
119.8 |
| N23 |
C22 |
F27 |
115.8 |
119.7 |
| H5 |
C12 |
H6 |
109.5 |
110.9 |
| H7 |
N16 |
H8 |
120.0 |
120.0 |
| H9 |
C18 |
H10 |
109.5 |
109.2 |
| H11 |
C19 |
H12 |
109.5 |
108.2 |
| H13 |
C20 |
H14 |
109.5 |
109.2 |
| H15 |
C21 |
H16 |
109.4 |
109.5 |
| H15 |
C21 |
H17 |
109.5 |
109.5 |
| H16 |
C21 |
H17 |
109.5 |
109.5 |
Torsion Angles for 3J9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C21 |
C9 |
C10 |
H4 |
182.8 |
176.0 |
| C20 |
C19 |
C18 |
H9 |
170.3 |
293.7 |
| C20 |
C19 |
C18 |
H10 |
290.0 |
173.9 |
| H11 |
C19 |
C20 |
H12 |
240.8 |
118.6 |
| H13 |
C20 |
C19 |
H14 |
240.6 |
119.9 |
| H9 |
C18 |
C19 |
H10 |
240.3 |
119.8 |
| C20 |
C9 |
C10 |
H4 |
59.7 |
55.6 |
| O17 |
C10 |
C9 |
H4 |
243.5 |
243.3 |
| C9 |
C10 |
C11 |
N15 |
198.8 |
207.0 |
| C11 |
C10 |
C9 |
H4 |
115.9 |
120.3 |
| O13 |
C12 |
C11 |
N15 |
2.5 |
334.4 |
| C12 |
O13 |
C14 |
N15 |
358.9 |
341.7 |
| C12 |
O13 |
C14 |
N16 |
190.4 |
161.7 |
| H5 |
C12 |
O13 |
H6 |
238.8 |
123.2 |
| C10 |
C11 |
C12 |
N15 |
113.5 |
117.2 |
| C12 |
C11 |
C10 |
H4 |
202.9 |
214.6 |
| C12 |
C11 |
N15 |
C14 |
356.7 |
16.7 |
| C18 |
O17 |
C10 |
H4 |
306.0 |
308.1 |
| C9 |
C10 |
O17 |
H4 |
115.7 |
117.2 |
| C11 |
C10 |
O17 |
H4 |
243.8 |
240.7 |
| O8 |
C5 |
C6 |
H3 |
0.2 |
358.5 |
| C14 |
O13 |
C12 |
H5 |
118.4 |
269.0 |
| C14 |
O13 |
C12 |
H6 |
239.6 |
145.8 |
| C11 |
N15 |
C14 |
O13 |
3.0 |
0.1 |
| N15 |
C14 |
O13 |
N16 |
168.5 |
180.0 |
| O13 |
C14 |
N16 |
H7 |
360.0 |
0.0 |
| O13 |
C14 |
N16 |
H8 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
H4 |
244.1 |
240.0 |
| C12 |
C11 |
C10 |
N15 |
248.3 |
247.7 |
| O17 |
C10 |
C11 |
H4 |
116.9 |
118.5 |
| C10 |
C11 |
N15 |
C14 |
235.8 |
258.0 |
| C5 |
C6 |
C1 |
H1 |
180.6 |
179.8 |
| C5 |
C4 |
C3 |
H2 |
179.1 |
179.7 |
| C11 |
C4 |
C3 |
H2 |
0.4 |
358.8 |
| O13 |
C14 |
N15 |
C11 |
3.0 |
0.1 |
| N15 |
C11 |
C10 |
H4 |
314.6 |
327.0 |
| C11 |
N15 |
C14 |
N16 |
169.8 |
180.1 |
| C6 |
C1 |
C2 |
C7 |
182.4 |
180.3 |
| C2 |
C1 |
C6 |
H1 |
180.0 |
179.8 |
| C4 |
C3 |
C2 |
C7 |
177.9 |
180.1 |
| C26 |
C25 |
C24 |
H18 |
180.1 |
179.7 |
| C26 |
C7 |
C22 |
F27 |
179.6 |
180.2 |
| C6 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
| C3 |
C2 |
C1 |
C7 |
176.5 |
180.0 |
| C1 |
C2 |
C7 |
C22 |
232.1 |
129.9 |
| C1 |
C2 |
C3 |
C7 |
183.4 |
180.0 |
| C3 |
C2 |
C1 |
H1 |
178.9 |
180.1 |
| C3 |
C2 |
C7 |
C22 |
55.6 |
309.9 |
| O13 |
C14 |
N15 |
N16 |
193.2 |
180.0 |
| N15 |
C14 |
N16 |
H7 |
193.7 |
180.0 |
| N15 |
C14 |
N16 |
H8 |
13.7 |
360.0 |
| O13 |
C14 |
N16 |
N15 |
166.3 |
180.0 |
| H7 |
N16 |
C14 |
H8 |
180.0 |
180.0 |
| C7 |
C2 |
C1 |
H1 |
2.4 |
0.1 |
| C2 |
C7 |
C22 |
N23 |
182.0 |
180.0 |
| C2 |
C7 |
C22 |
F27 |
2.6 |
0.1 |
| N23 |
C22 |
C7 |
F27 |
179.3 |
179.9 |
| C24 |
N23 |
C22 |
F27 |
179.3 |
180.0 |
| C7 |
C22 |
N23 |
F27 |
180.6 |
180.1 |
| C7 |
C22 |
F27 |
N23 |
179.4 |
179.9 |
| H1 |
C1 |
C2 |
C7 |
2.4 |
0.1 |
| H2 |
C3 |
C2 |
C7 |
357.9 |
359.9 |
| H3 |
C6 |
C1 |
H1 |
0.6 |
0.1 |
| C9 |
C10 |
H4 |
C11 |
120.7 |
122.0 |
| H4 |
C10 |
C11 |
N15 |
314.6 |
327.0 |
| H5 |
C12 |
O13 |
C14 |
118.4 |
269.0 |
| O13 |
C12 |
H5 |
H6 |
121.7 |
237.1 |
| H5 |
C12 |
C11 |
N15 |
243.1 |
92.0 |
| H6 |
C12 |
O13 |
C14 |
239.6 |
145.8 |
| O13 |
C12 |
H6 |
H5 |
238.2 |
123.1 |
| H6 |
C12 |
C11 |
N15 |
121.9 |
216.8 |
| C14 |
N16 |
H7 |
H8 |
180.0 |
180.0 |
| C14 |
N16 |
H8 |
H7 |
180.0 |
180.0 |
| C19 |
C18 |
H9 |
H10 |
119.5 |
240.1 |
| C19 |
C18 |
H10 |
H9 |
240.5 |
120.0 |
| C20 |
C19 |
H11 |
H12 |
118.8 |
240.1 |
| H11 |
C19 |
C20 |
H13 |
191.3 |
67.7 |
| H11 |
C19 |
C20 |
H14 |
310.8 |
307.9 |
| H11 |
C19 |
C18 |
H9 |
49.9 |
53.3 |
| H11 |
C19 |
C18 |
H10 |
169.6 |
293.5 |
| C20 |
C19 |
H12 |
H11 |
241.2 |
119.0 |
| H12 |
C19 |
C20 |
H13 |
310.6 |
309.2 |
| H12 |
C19 |
C20 |
H14 |
70.0 |
189.3 |
| H12 |
C19 |
C18 |
H9 |
290.7 |
171.6 |
| H12 |
C19 |
C18 |
H10 |
50.3 |
51.8 |
| H13 |
C20 |
C19 |
H11 |
191.3 |
67.7 |
| H13 |
C20 |
C19 |
H12 |
310.6 |
309.2 |
| C19 |
C20 |
H13 |
H14 |
119.1 |
239.8 |
| H14 |
C20 |
C19 |
H11 |
310.8 |
307.9 |
| H14 |
C20 |
C19 |
H12 |
70.0 |
189.3 |
| C19 |
C20 |
H14 |
H13 |
240.8 |
120.1 |
| H16 |
C21 |
H15 |
H17 |
120.0 |
120.0 |
| H15 |
C21 |
H16 |
H17 |
240.0 |
239.9 |
| H15 |
C21 |
H17 |
H16 |
120.0 |
120.0 |
| H19 |
C25 |
C24 |
H18 |
0.1 |
359.9 |
| H20 |
C26 |
C25 |
H19 |
358.7 |
359.8 |