PDB Chemical Component 3J4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3J4

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O3	C3	1.436	1.428
O2	C2	1.393	1.428
C3	C4	1.427	1.532
C3	C2	1.485	1.532
C4	O4	1.442	1.429
C4	C5	1.520	1.531
C2	C1	1.531	1.531
OAE	SAX	1.407	1.421
OAD	SAX	1.359	1.422
C5	O5	1.426	1.429
C5	C6	1.491	1.530
C1	SAX	1.815	1.814
C1	O5	1.389	1.429
SAX	NAV	1.398	1.656
C6	O6	1.407	1.429
NAV	CAL	1.451	1.470
NAV	CAM	1.219	1.474
CAL	CAK	1.513	1.544
CAM	CAP	1.617	1.550
CAK	CAP	1.249	1.551
CAP	OAO	1.473	1.429
OAO	SAW	1.549	1.522
NAA	SAW	1.537	1.656
SAW	OAB	1.412	1.421
SAW	OAC	1.374	1.421
C4	H4	1.100	1.090
C6	H61	1.100	1.089
NAA	H3A	1.000	0.970
NAA	H4A	1.000	0.970
O2	HO2	0.950	0.967
C2	H2	1.100	1.091
C3	H3	1.100	1.089
O3	HO3	0.950	0.967
O4	HO4	0.950	0.967
O6	HO6	0.950	0.967
C1	H1	1.100	1.090
CAM	H12	1.100	1.089
CAM	H13	1.100	1.090
CAL	H14	1.100	1.090
CAL	H15	1.100	1.090
CAK	H16	1.100	1.089
CAK	H17	1.100	1.090
CAP	H18	1.100	1.089
C5	H5	1.100	1.090
C6	H62	1.100	1.090

Bond Angles for 3J4

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O3	C3	H3	102.2	109.6
O2	C2	C1	117.0	109.6
C2	O2	HO2	109.5	114.0
O2	C2	H2	97.6	109.5
C3	C4	O4	108.5	109.5
C3	C4	H4	105.7	109.5
C3	C2	C1	120.4	109.2
C3	C2	H2	97.1	109.5
C5	C4	O4	113.5	109.6
O4	C4	H4	105.5	109.5
C4	O4	HO4	109.5	113.9
C4	C5	O5	120.4	109.4
C4	C5	C6	115.7	109.5
C5	C4	H4	104.7	109.5
C4	C5	H5	98.3	109.5
C2	C1	SAX	121.2	109.5
C2	C1	O5	117.1	109.4
C1	C2	H2	96.9	109.5
C2	C1	H1	104.6	109.5
OAE	SAX	NAV	107.1	104.2
OAD	SAX	NAV	112.3	104.3
C6	C5	O5	117.3	109.4
O5	C5	H5	98.9	109.5
C5	C6	O6	119.9	109.5
C5	C6	H61	106.8	109.5
C6	C5	H5	98.5	109.5
C5	C6	H62	106.8	109.5
C1	SAX	NAV	102.1	104.5
SAX	C1	H1	102.2	109.5
SAX	NAV	CAL	123.3	125.6
SAX	NAV	CAM	122.6	125.6
O6	C6	H61	106.8	109.5
C6	O6	HO6	109.5	114.0
O6	C6	H62	106.8	109.5
CAM	NAV	CAL	106.4	108.7
NAV	CAL	CAK	106.8	107.3
NAV	CAL	H14	110.1	109.9
NAV	CAL	H15	110.2	109.9
NAV	CAM	CAP	109.5	104.8
NAV	CAM	H12	109.5	110.4
NAV	CAM	H13	109.5	110.4
CAL	CAK	CAP	105.2	102.9
CAK	CAL	H14	110.1	109.9
CAK	CAL	H15	110.1	109.8
CAL	CAK	H16	110.5	110.7
CAL	CAK	H17	110.5	110.7
CAM	CAP	CAK	102.8	101.6
CAP	CAM	H12	109.4	110.4
CAP	CAM	H13	109.4	110.3
CAM	CAP	H18	106.8	111.0
CAP	CAK	H16	110.6	110.6
CAP	CAK	H17	110.5	110.9
CAK	CAP	H18	112.0	110.9
OAO	SAW	OAB	104.6	106.4
OAO	SAW	OAC	110.3	106.3
OAB	SAW	OAC	117.2	123.2
H61	C6	H62	109.5	109.4
H3A	NAA	H4A	109.4	120.0
H12	CAM	H13	109.5	110.5
H14	CAL	H15	109.5	110.0
H16	CAK	H17	109.5	110.8

Torsion Angles for 3J4

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O3	C3	C4	O4	285.3	296.8
O3	C3	C4	H4	38.1	56.9
O3	C3	C2	C1	207.8	183.1
O3	C3	C2	H2	105.4	63.3
C3	C2	O2	C1	204.1	240.3
C3	C2	O2	H2	102.3	120.2
O2	C2	C1	SAX	347.0	57.6
O2	C2	C1	O5	218.4	297.7
C1	C2	O2	H2	258.2	239.9
O2	C2	C1	H1	101.4	177.7
C5	C4	C3	O4	229.3	240.0
O4	C4	C3	H4	247.2	239.9
C3	C4	O4	HO4	180.0	180.3
C3	C4	C5	O5	344.1	302.4
C5	C4	C3	H4	116.6	120.0
C3	C4	C5	H5	238.6	182.4
O2	C2	C3	C1	155.0	120.0
C3	C2	O2	HO2	195.3	60.3
O2	C2	C3	H2	257.4	239.9
C2	C3	C4	O4	145.0	176.9
C2	C3	C4	H4	257.8	297.0
C3	C2	C1	SAX	142.2	177.6
C3	C2	C1	O5	13.7	57.7
C1	C2	C3	H2	102.4	119.9
C3	C2	C1	H1	256.6	297.7
C3	C4	O4	H4	112.9	120.1
O4	C4	C5	O5	215.7	182.5
O4	C4	C5	C6	6.6	302.4
C5	C4	O4	H4	246.0	239.8
O4	C4	C5	H5	110.2	62.5
C3	C4	C5	O4	128.4	119.9
C3	C4	C5	H4	242.9	240.1
O4	C4	C5	H4	114.5	120.1
C5	C4	O4	HO4	313.1	300.1
C6	C5	C4	O5	150.8	119.9
O5	C5	C4	H5	105.5	120.1
C4	C5	C6	O6	198.9	175.0
C4	C5	C6	H61	320.3	295.1
C6	C5	C4	H5	256.3	240.0
C4	C5	C6	H62	77.4	55.0
C1	C2	O2	HO2	351.2	180.0
O2	C2	C1	H2	102.3	120.1
C3	C2	C1	H2	257.5	240.1
C2	C1	SAX	NAV	164.2	185.0
SAX	C1	C2	H1	245.6	239.9
OAD	SAX	OAE	NAV	129.1	243.3
C1	SAX	OAE	NAV	249.4	111.7
OAE	SAX	C1	H1	162.4	313.3
OAE	SAX	NAV	CAL	326.9	206.1
OAE	SAX	NAV	CAM	181.8	26.3
OAE	SAX	OAD	NAV	233.3	116.7
C1	SAX	OAD	NAV	109.4	248.2
OAD	SAX	C1	H1	291.8	176.6
OAD	SAX	NAV	CAL	193.8	333.9
OAD	SAX	NAV	CAM	48.7	154.2
O5	C5	C4	O4	215.7	182.5
C4	C5	O5	C6	150.4	119.9
O5	C5	C4	H4	101.2	62.4
C4	C5	O5	H5	254.8	240.0
C2	C1	O5	C5	344.7	298.8
O5	C5	C6	O6	350.7	294.9
O5	C5	C6	H61	112.1	55.0
C6	C5	O5	H5	104.4	120.0
O5	C5	C6	H62	229.2	174.9
C6	C5	C4	O4	6.6	302.4
C4	C5	C6	O5	208.2	240.1
C6	C5	C4	H4	252.0	182.3
C4	C5	C6	H5	103.6	120.0
O5	C5	C6	H5	255.3	239.9
O6	C6	C5	H61	238.5	239.9
C5	C6	O6	HO6	180.0	180.0
O6	C6	C5	H62	121.5	120.0
H61	C6	C5	H62	242.9	240.1
C2	C1	SAX	O5	225.8	240.1
SAX	C1	C2	H2	244.7	297.5
C2	C1	SAX	H1	115.6	120.1
OAE	SAX	C1	NAV	113.8	248.4
OAD	SAX	C1	NAV	243.2	111.7
C1	SAX	NAV	CAL	83.4	90.0
C1	SAX	NAV	CAM	298.3	270.3
C2	C1	O5	SAX	136.5	120.0
O5	C1	C2	H2	116.1	177.6
C2	C1	O5	H1	243.8	240.0
C1	O5	C5	H5	122.0	181.1
NAV	SAX	C1	H1	48.6	64.9
CAM	NAV	SAX	CAL	214.9	180.3
SAX	NAV	CAL	CAK	213.7	181.1
SAX	NAV	CAL	H14	333.3	300.5
SAX	NAV	CAL	H15	94.1	61.7
SAX	NAV	CAM	CAP	163.5	155.8
SAX	NAV	CAM	H12	283.5	274.7
SAX	NAV	CAM	H13	43.5	37.1
O6	C6	C5	O5	350.7	294.9
C5	C6	O6	H61	121.4	120.0
O6	C6	C5	H5	95.3	55.0
C5	C6	O6	H62	238.5	240.0
H61	C6	O6	H62	117.1	120.0
SAX	NAV	CAL	CAM	210.2	180.2
CAL	NAV	CAM	CAP	13.4	336.1
CAL	NAV	CAM	H12	133.4	94.9
CAL	NAV	CAM	H13	253.4	217.3
NAV	CAL	CAK	CAP	336.4	22.3
CAK	CAL	NAV	H14	240.4	240.6
CAK	CAL	NAV	H15	119.6	119.4
NAV	CAL	CAK	H16	95.7	140.6
NAV	CAL	CAK	H17	217.1	263.8
H14	CAL	NAV	H15	239.2	238.8
SAX	NAV	CAM	CAL	150.1	179.8
CAM	NAV	CAL	CAK	3.5	0.9
CAM	NAV	CAL	H14	123.1	120.3
CAM	NAV	CAL	H15	244.0	241.5
NAV	CAM	CAP	CAK	330.4	36.9
CAP	CAM	NAV	H12	240.0	241.2
CAP	CAM	NAV	H13	120.0	118.8
NAV	CAM	CAP	H18	212.5	279.0
H12	CAM	NAV	H13	240.0	237.6
NAV	CAL	CAK	H14	119.6	119.4
NAV	CAL	CAK	H15	240.4	240.6
CAM	CAP	CAK	CAL	28.7	324.5
CAP	CAK	CAL	H16	240.7	241.8
CAP	CAK	CAL	H17	119.3	118.5
CAL	CAK	CAP	H18	142.9	82.5
H14	CAL	CAK	H15	120.8	121.2
H16	CAK	CAL	H17	238.7	236.7
CAP	CAM	NAV	CAL	13.4	336.1
NAV	CAM	CAP	H12	120.0	118.8
NAV	CAM	CAP	H13	240.0	241.2
CAL	CAK	CAP	CAM	28.7	324.5
CAM	CAP	CAK	H16	269.4	206.2
CAM	CAP	CAK	H17	148.0	82.8
CAK	CAP	CAM	H18	117.9	118.0
H12	CAM	CAP	H13	120.0	122.4
CAP	CAK	CAL	H14	216.8	262.9
CAP	CAK	CAL	H15	96.0	141.7
CAL	CAK	CAP	H16	119.3	118.3
CAL	CAK	CAP	H17	240.7	241.6
CAK	CAP	CAM	H12	210.4	278.1
CAK	CAP	CAM	H13	90.4	155.7
CAM	CAP	CAK	H18	245.8	241.9
H16	CAK	CAP	H17	121.4	123.3
OAB	SAW	OAO	OAC	126.8	227.1
OAO	SAW	OAB	OAC	237.6	122.9
OAO	SAW	OAC	OAB	119.5	237.1
C3	C4	H4	O4	245.2	239.9
C5	C4	H4	O4	120.0	120.2
H4	C4	O4	HO4	67.2	60.2
H4	C4	C5	O5	101.2	62.4
H4	C4	C5	C6	252.0	182.3
H4	C4	C5	H5	355.7	302.3
H61	C6	C5	O5	112.1	55.0
C5	C6	H61	O6	230.6	239.9
H61	C6	C5	H5	216.8	175.1
C5	C6	H61	H62	115.3	120.0
H61	C6	O6	HO6	58.6	60.0
O6	C6	H61	H62	244.7	240.0
HO2	O2	C2	C1	351.2	180.0
HO2	O2	C2	H2	93.0	300.1
O2	C2	H2	C1	241.5	239.9
H2	C2	O2	HO2	93.0	300.1
C3	C2	H2	C1	121.9	119.7
H2	C2	C1	SAX	244.7	297.5
H2	C2	C1	O5	116.1	177.6
H2	C2	C1	H1	359.1	57.6
H3	C3	C4	O4	34.1	57.1
H3	C3	C4	H4	146.8	177.2
H3	C3	C2	C1	97.5	62.8
H3	C3	C2	H2	355.1	303.0
HO3	O3	C3	H3	71.2	299.8
HO4	O4	C4	H4	67.2	60.2
HO6	O6	C6	H61	58.6	60.0
HO6	O6	C6	H62	301.5	300.0
C2	C1	H1	SAX	232.8	239.9
C2	C1	H1	O5	124.4	119.9
H1	C1	C2	H2	359.1	57.6
H1	C1	SAX	NAV	48.6	64.9
H12	CAM	NAV	CAL	133.4	94.9
NAV	CAM	H12	CAP	239.9	244.6
NAV	CAM	H12	H13	120.0	122.3
H12	CAM	CAP	CAK	210.4	278.1
CAP	CAM	H12	H13	240.1	237.7
H12	CAM	CAP	H18	92.4	160.1
H13	CAM	NAV	CAL	253.4	217.3
NAV	CAM	H13	CAP	120.1	115.3
NAV	CAM	H13	H12	240.0	237.7
H13	CAM	CAP	CAK	90.4	155.7
CAP	CAM	H13	H12	119.9	122.3
H13	CAM	CAP	H18	332.5	37.8
NAV	CAL	H14	CAK	242.5	242.2
NAV	CAL	H14	H15	121.2	121.2
H14	CAL	CAK	CAP	216.8	262.9
CAK	CAL	H14	H15	238.8	239.0
H14	CAL	CAK	H16	336.1	21.1
H14	CAL	CAK	H17	97.5	144.4
NAV	CAL	H15	CAK	117.5	117.8
NAV	CAL	H15	H14	238.8	238.8
H15	CAL	CAK	CAP	96.0	141.7
CAK	CAL	H15	H14	121.2	121.1
H15	CAL	CAK	H16	215.3	260.0
H15	CAL	CAK	H17	336.7	23.2
CAL	CAK	H16	CAP	244.0	246.6
H16	CAK	CAL	H14	336.1	21.1
H16	CAK	CAL	H15	215.3	260.0
CAL	CAK	H16	H17	122.0	123.2
CAP	CAK	H16	H17	238.0	236.6
H16	CAK	CAP	H18	23.6	324.2
CAL	CAK	H17	CAP	116.0	113.5
H17	CAK	CAL	H14	97.5	144.4
H17	CAK	CAL	H15	336.7	23.2
CAL	CAK	H17	H16	238.1	236.8
CAP	CAK	H17	H16	122.0	123.2
H17	CAK	CAP	H18	262.2	200.9
CAM	CAP	H18	CAK	111.7	112.2
H18	CAP	CAM	H12	92.4	160.1
H18	CAP	CAM	H13	332.5	37.8
H18	CAP	CAK	H16	23.6	324.2
H18	CAP	CAK	H17	262.2	200.9
H5	C5	C4	O4	110.2	62.5
C4	C5	H5	O5	122.7	120.0
C4	C5	H5	C6	242.2	240.0
H5	C5	C4	H4	355.7	302.3
C6	C5	H5	O5	240.5	240.0
H5	C5	C6	O6	95.3	55.0
H5	C5	C6	H61	216.8	175.1
H5	C5	C6	H62	333.9	295.0
H62	C6	C5	O5	229.2	174.9
C5	C6	H62	O6	129.4	120.0
C5	C6	H62	H61	244.7	240.0
H62	C6	C5	H5	333.9	295.0
O6	C6	H62	H61	115.3	120.0
H62	C6	O6	HO6	301.5	300.0