PDB Chemical Component 3J3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3J3

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O3	C3	1.433	1.429
O4	C4	1.387	1.429
C4	C3	1.490	1.532
C4	C5	1.543	1.532
C3	C2	1.436	1.532
C5	C6	1.388	1.530
C5	O5	1.492	1.429
C2	O2	1.454	1.429
C2	C1	1.461	1.531
C6	O6	1.410	1.428
O5	C1	1.431	1.429
C1	SAY	1.722	1.814
CAM	NAW	1.418	1.469
CAM	CAK	1.507	1.533
NAW	SAY	1.446	1.656
NAW	CAN	1.418	1.469
SAY	OAE	1.418	1.422
SAY	OAD	1.464	1.421
CAN	CAL	1.528	1.532
CAK	CAQ	1.424	1.526
CAL	CAQ	1.380	1.531
CAQ	OAP	1.499	1.429
NAA	SAX	1.470	1.656
OAP	SAX	1.428	1.522
OAC	SAX	1.379	1.421
SAX	OAB	1.244	1.421
O2	HO2	0.950	0.967
C2	H2	1.100	1.090
C3	H3	1.101	1.089
O3	HO3	0.950	0.967
C4	H4	1.100	1.090
O4	HO4	0.950	0.966
C5	H5	1.100	1.090
C6	H61	1.100	1.090
C6	H62	1.100	1.090
O6	HO6	0.950	0.968
C1	H1	1.100	1.090
CAN	H12	1.100	1.091
CAN	H13	1.100	1.090
CAL	H14	1.100	1.089
CAL	H15	1.100	1.090
CAM	H16	1.100	1.090
CAK	H17	1.100	1.090
CAQ	H18	1.100	1.091
NAA	H19	1.000	0.970
NAA	H20	1.000	0.970
CAM	H21	1.100	1.089
CAK	H22	1.099	1.090

Bond Angles for 3J3

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O3	C3	H3	107.3	109.6
O4	C4	C5	116.3	109.5
O4	C4	H4	100.8	109.6
C4	C3	H3	106.6	109.5
C4	C5	C6	121.8	109.5
C4	C5	O5	116.7	109.4
C5	C4	H4	99.6	109.5
C4	C5	H5	102.0	109.5
C3	C2	C1	115.5	109.2
C3	C2	H2	103.4	109.5
C6	C5	O5	107.5	109.5
C5	C6	O6	95.0	109.5
C6	C5	H5	103.4	109.5
C5	C6	H61	112.9	109.5
C5	C6	H62	113.0	109.5
C5	O5	C1	116.6	114.1
O5	C5	H5	102.4	109.5
C2	O2	HO2	109.5	114.0
C2	C1	O5	126.2	109.4
C2	C1	SAY	113.7	109.5
C1	C2	H2	103.1	109.5
C2	C1	H1	102.9	109.5
O6	C6	H61	112.9	109.5
O6	C6	H62	112.9	109.5
C6	O6	HO6	109.5	114.0
O5	C1	SAY	106.3	109.5
O5	C1	H1	103.2	109.5
C1	SAY	OAE	108.2	110.5
C1	SAY	OAD	89.7	110.6
SAY	C1	H1	100.9	109.4
CAM	CAK	CAQ	115.1	109.3
CAK	CAM	H16	106.9	109.5
CAM	CAK	H17	108.0	109.5
CAK	CAM	H21	106.9	109.6
CAM	CAK	H22	108.0	109.5
NAW	CAN	CAL	120.3	108.8
NAW	CAN	H12	106.7	109.6
NAW	CAN	H13	106.7	109.6
OAD	SAY	OAE	109.5	121.0
CAN	CAL	CAQ	114.2	109.3
CAL	CAN	H12	106.7	109.6
CAL	CAN	H13	106.7	109.6
CAN	CAL	H14	108.3	109.5
CAN	CAL	H15	108.3	109.5
CAL	CAQ	CAK	118.9	109.4
CAK	CAQ	OAP	107.4	109.4
CAQ	CAK	H17	108.0	109.6
CAK	CAQ	H18	101.7	109.7
CAQ	CAK	H22	108.1	109.4
CAL	CAQ	OAP	121.8	109.5
CAQ	CAL	H14	108.3	109.5
CAQ	CAL	H15	108.3	109.4
CAL	CAQ	H18	102.1	109.4
CAQ	OAP	SAX	141.7	114.0
OAP	CAQ	H18	101.1	109.5
OAP	SAX	OAB	112.5	106.4
H61	C6	H62	109.5	109.5
H12	CAN	H13	109.5	109.7
H14	CAL	H15	109.5	109.6
H16	CAM	H21	109.5	109.7
H17	CAK	H22	109.5	109.6
H19	NAA	H20	109.5	120.0

Torsion Angles for 3J3

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4	C3	O3	H3	113.5	120.3
O3	C3	C2	C1	215.8	297.1
O3	C3	C2	H2	327.6	56.9
O4	C4	C3	H3	116.3	63.3
O4	C4	C5	C6	6.4	57.5
O4	C4	C5	O5	141.6	177.5
C5	C4	O4	H4	106.5	120.1
O4	C4	C5	H5	252.2	297.5
O3	C3	C4	H3	246.0	239.7
C4	C3	C2	C1	338.3	57.0
C4	C3	C2	H2	90.0	176.9
O4	C4	C5	H4	252.8	239.8
C5	C4	C3	H3	262.2	183.2
C6	C5	C4	O5	224.9	240.0
C4	C5	C6	O6	199.8	186.6
C6	C5	C4	H5	114.2	120.0
C4	C5	C6	H61	317.4	306.6
C4	C5	C6	H62	82.3	66.6
C4	C5	O5	C1	343.9	298.8
O5	C5	C4	H5	249.4	240.0
C3	C2	O2	HO2	180.0	299.7
C3	C2	C1	O5	359.4	302.4
C3	C2	C1	SAY	224.8	182.4
C1	C2	C3	H2	248.2	240.1
C3	C2	C1	H1	116.6	62.4
C4	C5	C6	O5	138.6	119.9
C6	C5	C4	H4	113.6	177.7
C4	C5	C6	H5	246.5	240.0
C6	C5	O5	C1	125.0	58.8
O5	C5	C6	H5	107.8	120.0
O6	C6	C5	H61	242.5	240.0
O6	C6	C5	H62	117.5	120.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	235.0	240.0
C4	C5	O5	C6	218.9	240.0
O5	C5	C4	H4	248.7	297.7
C4	C5	O5	H5	110.4	119.9
O5	C5	C6	O6	61.2	66.6
C6	C5	O5	H5	251.5	239.9
O5	C5	C6	H61	178.7	186.6
O5	C5	C6	H62	303.7	306.6
C2	C1	O5	C5	19.8	61.2
C5	O5	C1	SAY	157.0	181.2
C5	O5	C1	H1	262.7	301.2
C3	C2	C1	H2	111.9	119.9
C5	O5	C1	C2	19.8	61.2
C1	C2	O2	HO2	43.2	180.0
O5	C1	C2	SAY	134.6	120.0
O5	C1	C2	H1	242.8	240.0
C2	C1	SAY	OAE	148.4	68.4
C2	C1	SAY	OAD	258.8	291.6
SAY	C1	C2	H1	108.2	120.0
O6	C6	C5	O5	61.2	66.6
O6	C6	C5	H5	313.4	306.6
C5	C6	O6	H61	117.5	120.0
C5	C6	O6	H62	242.5	240.0
H61	C6	O6	H62	125.0	120.0
C1	O5	C5	H5	233.5	178.9
C2	C1	O5	SAY	222.8	240.0
O5	C1	C2	H2	247.5	182.5
C2	C1	O5	H1	117.1	120.0
O5	C1	SAY	OAE	5.2	308.4
O5	C1	SAY	OAD	115.6	171.7
SAY	C1	O5	H1	254.3	240.0
C2	C1	SAY	O5	143.2	120.0
SAY	C1	C2	H2	112.9	62.5
C2	C1	SAY	H1	250.6	240.0
O5	C1	SAY	H1	107.4	120.0
OAD	SAY	C1	OAE	110.4	223.2
CAM	NAW	CAN	H12	149.1	66.4
CAM	NAW	CAN	H13	266.1	186.8
CAL	CAQ	CAK	CAM	37.2	61.6
CAM	CAK	CAQ	OAP	180.6	181.5
CAQ	CAK	CAM	H17	239.2	240.0
CAM	CAK	CAQ	H18	286.3	301.6
CAQ	CAK	CAM	H22	120.8	119.8
H16	CAM	CAK	H21	117.2	120.4
H17	CAK	CAM	H22	241.6	239.9
NAW	SAY	C1	H1	120.1	300.0
NAW	CAN	CAL	CAQ	4.2	54.6
CAL	CAN	NAW	H12	238.5	240.2
CAL	CAN	NAW	H13	121.5	119.9
NAW	CAN	CAL	H14	124.9	174.6
NAW	CAN	CAL	H15	243.5	294.7
H12	CAN	NAW	H13	243.0	239.6
C1	SAY	OAE	OAD	96.3	228.5
OAE	SAY	C1	H1	257.8	188.4
C1	SAY	OAD	OAE	250.8	131.5
OAD	SAY	C1	H1	8.2	51.7
NAW	CAN	CAL	H12	121.5	119.8
NAW	CAN	CAL	H13	238.5	240.1
CAN	CAL	CAQ	CAK	322.5	298.4
CAN	CAL	CAQ	OAP	184.5	178.6
CAQ	CAL	CAN	H14	239.3	240.0
CAQ	CAL	CAN	H15	120.7	119.9
CAN	CAL	CAQ	H18	73.2	58.7
H12	CAN	CAL	H13	116.9	120.4
H14	CAL	CAN	H15	241.4	239.8
CAQ	CAK	CAM	H16	235.9	185.5
CAM	CAK	CAQ	H17	120.8	120.0
CAQ	CAK	CAM	H21	118.8	65.1
CAM	CAK	CAQ	H22	239.2	240.1
CAL	CAQ	CAK	OAP	216.6	240.1
CAK	CAQ	CAL	H14	201.8	178.5
CAK	CAQ	CAL	H15	83.2	58.3
CAL	CAQ	CAK	H18	111.0	120.0
CAK	CAQ	OAP	SAX	222.5	95.2
OAP	CAQ	CAK	H18	254.3	239.9
H17	CAK	CAQ	H22	118.4	120.1
CAM	CAK	CAQ	CAL	37.2	61.6
CAQ	CAL	CAN	H12	242.7	294.8
CAQ	CAL	CAN	H13	125.7	174.4
CAN	CAL	CAQ	H14	120.7	120.0
CAN	CAL	CAQ	H15	239.3	240.1
CAK	CAQ	CAL	OAP	138.0	119.8
CAL	CAQ	CAK	H17	276.4	301.6
CAK	CAQ	CAL	H18	249.3	239.8
CAL	CAQ	CAK	H22	158.1	181.5
CAL	CAQ	OAP	SAX	4.6	215.0
OAP	CAQ	CAL	H18	111.3	119.9
H14	CAL	CAQ	H15	118.6	120.1
CAL	CAQ	OAP	CAK	142.1	119.8
OAP	CAQ	CAK	H17	59.8	61.5
CAK	CAQ	OAP	H18	106.1	120.2
OAP	CAQ	CAK	H22	301.4	301.4
OAP	CAQ	CAL	H14	63.8	58.6
OAP	CAQ	CAL	H15	305.2	298.5
CAL	CAQ	OAP	H18	248.2	240.1
CAQ	OAP	SAX	OAB	241.0	188.6
SAX	OAP	CAQ	H18	116.5	334.9
C3	C2	H2	C1	239.4	240.3
H2	C2	O2	HO2	293.4	59.9
H2	C2	C1	O5	247.5	182.5
H2	C2	C1	SAY	112.9	62.5
H2	C2	C1	H1	4.7	302.5
H3	C3	C2	C1	99.9	176.8
H3	C3	C2	H2	211.7	296.7
HO3	O3	C3	H3	66.4	300.2
O4	C4	H4	C5	119.3	120.1
H4	C4	C3	H3	9.0	303.1
H4	C4	C5	C6	113.6	177.7
H4	C4	C5	O5	248.7	297.7
H4	C4	C5	H5	359.4	57.7
HO4	O4	C4	C5	33.3	60.3
HO4	O4	C4	H4	286.8	300.2
C4	C5	H5	C6	127.2	120.0
C4	C5	H5	O5	238.9	240.1
H5	C5	C4	H4	359.4	57.7
C6	C5	H5	O5	111.7	120.1
H5	C5	C6	O6	313.4	306.6
H5	C5	C6	H61	70.9	66.6
H5	C5	C6	H62	195.9	186.6
H5	C5	O5	C1	233.5	178.9
H61	C6	C5	O5	178.7	186.6
C5	C6	H61	O6	253.6	240.0
H61	C6	C5	H5	70.9	66.6
C5	C6	H61	H62	126.8	120.0
O6	C6	H61	H62	233.2	240.0
H61	C6	O6	HO6	62.5	60.0
H62	C6	C5	O5	303.7	306.6
C5	C6	H62	O6	106.4	120.0
H62	C6	C5	H5	195.9	186.6
C5	C6	H62	H61	233.2	240.0
O6	C6	H62	H61	126.8	120.0
H62	C6	O6	HO6	297.5	300.0
HO6	O6	C6	H61	62.5	60.0
HO6	O6	C6	H62	297.5	300.0
C2	C1	H1	O5	227.5	240.0
C2	C1	H1	SAY	117.7	120.0
H1	C1	C2	H2	4.7	302.5
O5	C1	H1	SAY	250.2	240.0
H1	C1	SAY	OAE	257.8	188.4
H1	C1	SAY	OAD	8.2	51.7
NAW	CAN	H12	CAL	230.2	240.7
NAW	CAN	H12	H13	115.1	120.4
H12	CAN	CAL	CAQ	242.7	294.8
CAL	CAN	H12	H13	244.9	239.6
H12	CAN	CAL	H14	3.4	54.8
H12	CAN	CAL	H15	122.0	175.0
NAW	CAN	H13	CAL	129.8	119.3
NAW	CAN	H13	H12	244.9	239.7
H13	CAN	CAL	CAQ	125.7	174.4
CAL	CAN	H13	H12	115.1	120.3
H13	CAN	CAL	H14	246.4	294.4
H13	CAN	CAL	H15	5.0	54.6
CAN	CAL	H14	CAQ	235.7	240.1
H14	CAL	CAN	H12	3.4	54.8
H14	CAL	CAN	H13	246.4	294.4
CAN	CAL	H14	H15	117.9	120.1
H14	CAL	CAQ	CAK	201.8	178.5
H14	CAL	CAQ	OAP	63.8	58.6
CAQ	CAL	H14	H15	242.2	239.9
H14	CAL	CAQ	H18	312.5	298.7
CAN	CAL	H15	CAQ	124.3	119.8
H15	CAL	CAN	H12	122.0	175.0
H15	CAL	CAN	H13	5.0	54.6
CAN	CAL	H15	H14	242.1	239.9
H15	CAL	CAQ	CAK	83.2	58.3
H15	CAL	CAQ	OAP	305.2	298.5
CAQ	CAL	H15	H14	117.8	120.1
H15	CAL	CAQ	H18	193.9	178.6
H16	CAM	CAK	CAQ	235.9	185.5
H16	CAM	CAK	H17	356.7	305.5
CAK	CAM	H16	H21	244.5	239.6
H16	CAM	CAK	H22	115.1	65.7
CAM	CAK	H17	CAQ	234.9	240.1
H17	CAK	CAM	H16	356.7	305.5
H17	CAK	CAM	H21	239.6	185.1
CAM	CAK	H17	H22	117.4	120.1
H17	CAK	CAQ	OAP	59.8	61.5
H17	CAK	CAQ	H18	165.5	181.6
CAQ	CAK	H17	H22	242.5	240.0
CAL	CAQ	H18	CAK	236.7	240.0
CAK	CAQ	H18	OAP	249.4	240.0
H18	CAQ	CAK	H17	165.5	181.6
H18	CAQ	CAK	H22	47.1	61.5
CAL	CAQ	H18	OAP	126.2	119.9
H18	CAQ	CAL	H14	312.5	298.7
H18	CAQ	CAL	H15	193.9	178.6
H18	CAQ	OAP	SAX	116.5	334.9
H21	CAM	CAK	CAQ	118.8	65.1
CAK	CAM	H21	H16	115.4	120.3
H21	CAM	CAK	H17	239.6	185.1
H21	CAM	CAK	H22	357.9	305.2
CAM	CAK	H22	CAQ	125.1	119.8
H22	CAK	CAM	H16	115.1	65.7
CAM	CAK	H22	H17	242.6	239.9
H22	CAK	CAM	H21	357.9	305.2
H22	CAK	CAQ	OAP	301.4	301.4
CAQ	CAK	H22	H17	117.4	120.1
H22	CAK	CAQ	H18	47.1	61.5