PDB Chemical Component 3GW
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3GW
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O4 |
C4 |
1.397 |
1.429 |
| C6 |
O6 |
1.384 |
1.429 |
| C6 |
C5 |
1.515 |
1.531 |
| C4 |
C5 |
1.536 |
1.530 |
| C4 |
C3 |
1.512 |
1.532 |
| C5 |
O5 |
1.412 |
1.429 |
| O3 |
C3 |
1.452 |
1.429 |
| C3 |
C2 |
1.463 |
1.532 |
| O5 |
C1 |
1.543 |
1.429 |
| C2 |
C1 |
1.507 |
1.531 |
| C2 |
N2 |
1.515 |
1.465 |
| C1 |
O1 |
1.359 |
1.429 |
| OAC |
CBC |
1.259 |
1.212 |
| N2 |
CBC |
1.461 |
1.348 |
| O1 |
PBU |
1.554 |
1.610 |
| CBC |
CAA |
1.451 |
1.506 |
| OAO |
PBU |
1.456 |
1.479 |
| PBU |
OBA |
1.566 |
1.611 |
| PBU |
OAH |
1.512 |
1.609 |
| OBA |
PBT |
1.590 |
1.609 |
| C5' |
O5' |
1.420 |
1.429 |
| C5' |
C4' |
1.442 |
1.529 |
| O5' |
PBT |
1.628 |
1.610 |
| O4' |
C4' |
1.414 |
1.437 |
| O4' |
C1' |
1.487 |
1.444 |
| C4' |
C3' |
1.499 |
1.541 |
| PBT |
OAG |
1.539 |
1.480 |
| PBT |
OAN |
1.505 |
1.610 |
| CAP |
CAQ |
1.426 |
1.363 |
| CAP |
CBE |
1.400 |
1.373 |
| CAQ |
CBF |
1.402 |
1.369 |
| CBE |
CBD |
1.549 |
1.408 |
| CBE |
SBB |
1.691 |
1.758 |
| CBD |
OAD |
1.403 |
1.216 |
| C1' |
NBS |
1.438 |
1.465 |
| C1' |
C2' |
1.488 |
1.550 |
| CAR |
NBS |
1.358 |
1.363 |
| CAR |
CBG |
1.406 |
1.368 |
| C3' |
O3' |
1.361 |
1.429 |
| C3' |
C2' |
1.473 |
1.549 |
| CBF |
CBG |
1.481 |
1.474 |
| CBF |
SBB |
1.709 |
1.759 |
| NBS |
CBI |
1.340 |
1.343 |
| CBG |
CBH |
1.395 |
1.472 |
| O2' |
C2' |
1.370 |
1.429 |
| CBI |
OAF |
1.212 |
1.215 |
| CBI |
NAV |
1.337 |
1.344 |
| CBH |
NAV |
1.346 |
1.350 |
| CBH |
OAE |
1.363 |
1.216 |
| CBD |
H1 |
1.080 |
1.080 |
| CAP |
H4 |
1.080 |
1.080 |
| CAQ |
H5 |
1.080 |
1.080 |
| CAR |
H7 |
1.080 |
1.080 |
| NAV |
H8 |
1.000 |
0.970 |
| C1' |
H9 |
1.100 |
1.090 |
| C2' |
H10 |
1.100 |
1.090 |
| O2' |
H11 |
0.949 |
0.967 |
| C3' |
H12 |
1.100 |
1.091 |
| O3' |
H13 |
0.950 |
0.967 |
| C4' |
H14 |
1.100 |
1.090 |
| C5' |
H15 |
1.100 |
1.090 |
| C5' |
H16 |
1.100 |
1.090 |
| OAN |
H17 |
0.950 |
0.966 |
| OAH |
H18 |
0.950 |
0.968 |
| C1 |
H19 |
1.100 |
1.091 |
| C5 |
H20 |
1.100 |
1.090 |
| C6 |
H21 |
1.100 |
1.090 |
| C6 |
H22 |
1.100 |
1.090 |
| O6 |
H23 |
0.950 |
0.967 |
| C4 |
H24 |
1.100 |
1.089 |
| O4 |
H25 |
0.950 |
0.967 |
| C3 |
H26 |
1.099 |
1.090 |
| O3 |
H27 |
0.950 |
0.966 |
| C2 |
H28 |
1.100 |
1.090 |
| N2 |
H29 |
1.000 |
0.970 |
| CAA |
H30 |
1.100 |
1.090 |
| CAA |
H31 |
1.100 |
1.090 |
| CAA |
H32 |
1.100 |
1.091 |
Bond Angles for 3GW
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4 |
C4 |
C3 |
109.4 |
109.5 |
| O4 |
C4 |
H24 |
110.9 |
109.6 |
| O6 |
C6 |
H21 |
107.7 |
109.5 |
| O6 |
C6 |
H22 |
107.8 |
109.5 |
| C6 |
O6 |
H23 |
109.5 |
114.0 |
| C6 |
C5 |
H20 |
106.1 |
109.4 |
| C4 |
C5 |
H20 |
105.9 |
109.5 |
| C4 |
C3 |
C2 |
111.2 |
109.1 |
| C3 |
C4 |
H24 |
109.2 |
109.5 |
| C4 |
C3 |
H26 |
106.8 |
109.5 |
| O3 |
C3 |
C2 |
112.6 |
109.6 |
| O3 |
C3 |
H26 |
107.5 |
109.6 |
| C3 |
C2 |
N2 |
112.6 |
109.6 |
| C2 |
C3 |
H26 |
107.3 |
109.5 |
| C3 |
C2 |
H28 |
107.5 |
109.5 |
| O5 |
C1 |
H19 |
108.5 |
109.5 |
| C2 |
C1 |
H19 |
109.0 |
109.5 |
| C2 |
N2 |
CBC |
118.5 |
120.0 |
| N2 |
C2 |
H28 |
106.9 |
109.6 |
| C2 |
N2 |
H29 |
120.8 |
119.9 |
| N2 |
CBC |
CAA |
120.6 |
120.0 |
| CBC |
N2 |
H29 |
120.7 |
120.0 |
| CBC |
CAA |
H30 |
109.5 |
109.5 |
| CBC |
CAA |
H31 |
109.5 |
109.5 |
| CBC |
CAA |
H32 |
109.5 |
109.5 |
| OAO |
PBU |
OAH |
105.2 |
109.5 |
| PBU |
OAH |
H18 |
109.5 |
114.0 |
| C5' |
O5' |
PBT |
117.6 |
123.0 |
| O5' |
C5' |
H15 |
106.9 |
109.4 |
| O5' |
C5' |
H16 |
106.9 |
109.4 |
| C5' |
C4' |
H14 |
109.9 |
110.0 |
| O5' |
PBT |
OAG |
112.1 |
109.5 |
| O5' |
PBT |
OAN |
106.7 |
109.4 |
| O4' |
C4' |
C3' |
105.6 |
107.3 |
| O4' |
C4' |
H14 |
110.4 |
109.9 |
| O4' |
C1' |
C2' |
105.7 |
103.5 |
| O4' |
C1' |
H9 |
108.2 |
110.8 |
| C4' |
C3' |
H12 |
109.6 |
110.6 |
| OAN |
PBT |
OAG |
109.9 |
109.5 |
| PBT |
OAN |
H17 |
109.5 |
114.0 |
| CAP |
CAQ |
CBF |
114.7 |
114.8 |
| CAQ |
CAP |
H4 |
123.1 |
122.7 |
| CAP |
CAQ |
H5 |
122.6 |
122.6 |
| CAQ |
CBF |
CBG |
125.2 |
125.2 |
| CBF |
CAQ |
H5 |
122.7 |
122.6 |
| CBE |
CBD |
H1 |
121.8 |
120.0 |
| OAD |
CBD |
H1 |
121.8 |
120.0 |
| C2' |
C1' |
H9 |
108.2 |
110.6 |
| C1' |
C2' |
H10 |
110.6 |
110.9 |
| CAR |
NBS |
CBI |
119.1 |
121.4 |
| NBS |
CAR |
H7 |
119.3 |
120.3 |
| CAR |
CBG |
CBH |
115.8 |
118.2 |
| O3' |
C3' |
H12 |
111.7 |
110.4 |
| C3' |
O3' |
H13 |
109.5 |
114.0 |
| C3' |
C2' |
H10 |
110.8 |
110.9 |
| CBF |
CBG |
CBH |
121.4 |
120.9 |
| CBG |
CBH |
NAV |
121.0 |
118.6 |
| CBG |
CBH |
OAE |
119.6 |
120.7 |
| O2' |
C2' |
H10 |
112.5 |
110.8 |
| CBI |
NAV |
H8 |
119.8 |
119.9 |
| OAE |
CBH |
NAV |
119.1 |
120.7 |
| CBH |
NAV |
H8 |
119.7 |
119.8 |
| H15 |
C5' |
H16 |
109.4 |
109.4 |
| H21 |
C6 |
H22 |
109.5 |
109.5 |
| H30 |
CAA |
H31 |
109.5 |
109.4 |
| H30 |
CAA |
H32 |
109.5 |
109.5 |
| H31 |
CAA |
H32 |
109.5 |
109.4 |
Torsion Angles for 3GW
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4 |
C4 |
C5 |
H20 |
175.5 |
182.3 |
| O4 |
C4 |
C3 |
C2 |
293.8 |
297.1 |
| C3 |
C4 |
O4 |
H24 |
239.4 |
239.9 |
| O4 |
C4 |
C3 |
H26 |
177.0 |
177.2 |
| O6 |
C6 |
C5 |
H20 |
313.5 |
305.0 |
| H21 |
C6 |
O6 |
H22 |
242.0 |
120.0 |
| C4 |
C5 |
C6 |
H20 |
244.0 |
240.0 |
| C6 |
C5 |
C4 |
H20 |
116.2 |
120.0 |
| O4 |
C4 |
C3 |
H24 |
121.6 |
120.2 |
| C3 |
C4 |
C5 |
H20 |
56.0 |
62.4 |
| O3 |
C3 |
C4 |
C2 |
126.3 |
119.9 |
| O3 |
C3 |
C4 |
H26 |
243.1 |
239.7 |
| C4 |
C3 |
C2 |
N2 |
188.9 |
183.1 |
| C2 |
C3 |
C4 |
H26 |
116.8 |
119.8 |
| C4 |
C3 |
C2 |
H28 |
71.4 |
62.9 |
| C5 |
O5 |
C1 |
H19 |
182.9 |
178.9 |
| C4 |
C3 |
O3 |
C2 |
234.5 |
240.4 |
| O3 |
C3 |
C4 |
H24 |
298.5 |
296.8 |
| C4 |
C3 |
O3 |
H26 |
116.5 |
120.2 |
| O3 |
C3 |
C2 |
N2 |
63.3 |
63.2 |
| C2 |
C3 |
O3 |
H26 |
242.0 |
239.8 |
| O3 |
C3 |
C2 |
H28 |
305.8 |
303.0 |
| C2 |
C3 |
C4 |
H24 |
172.2 |
176.9 |
| C4 |
C3 |
C2 |
H26 |
243.6 |
240.1 |
| O3 |
C3 |
C2 |
H26 |
118.0 |
120.3 |
| C3 |
C2 |
C1 |
H19 |
170.7 |
177.6 |
| C3 |
C2 |
N2 |
CBC |
238.0 |
205.0 |
| N2 |
C2 |
C3 |
H28 |
117.5 |
120.2 |
| C3 |
C2 |
N2 |
H29 |
58.0 |
25.0 |
| C2 |
C1 |
O5 |
H19 |
121.5 |
120.0 |
| O5 |
C1 |
C2 |
H19 |
238.8 |
240.0 |
| N2 |
C2 |
C3 |
H26 |
305.3 |
303.0 |
| C3 |
C2 |
N2 |
H28 |
242.1 |
239.8 |
| N2 |
C2 |
C1 |
H19 |
297.0 |
297.5 |
| C2 |
N2 |
CBC |
CAA |
190.7 |
180.0 |
| CBC |
N2 |
C2 |
H29 |
180.0 |
180.1 |
| OAC |
CBC |
N2 |
H29 |
190.2 |
180.0 |
| OAC |
CBC |
CAA |
H30 |
0.0 |
180.1 |
| OAC |
CBC |
CAA |
H31 |
120.0 |
300.0 |
| OAC |
CBC |
CAA |
H32 |
240.0 |
60.0 |
| CBC |
N2 |
C2 |
H28 |
355.8 |
325.2 |
| C2 |
N2 |
CBC |
H29 |
180.0 |
179.9 |
| N2 |
CBC |
CAA |
H30 |
179.5 |
360.0 |
| N2 |
CBC |
CAA |
H31 |
299.5 |
120.0 |
| N2 |
CBC |
CAA |
H32 |
59.5 |
239.9 |
| O1 |
PBU |
OAH |
H18 |
239.1 |
60.0 |
| CAA |
CBC |
N2 |
H29 |
10.7 |
0.1 |
| H30 |
CAA |
CBC |
H31 |
240.0 |
240.0 |
| H30 |
CAA |
CBC |
H32 |
120.0 |
120.0 |
| H31 |
CAA |
CBC |
H32 |
240.0 |
240.0 |
| OAO |
PBU |
OAH |
H18 |
0.0 |
180.0 |
| OBA |
PBT |
OAN |
H17 |
235.8 |
60.0 |
| O5' |
C5' |
C4' |
H14 |
166.5 |
305.3 |
| C5' |
O5' |
PBT |
OAG |
163.8 |
55.0 |
| C5' |
O5' |
PBT |
OAN |
43.4 |
295.0 |
| H15 |
C5' |
O5' |
H16 |
242.9 |
119.9 |
| O4' |
C4' |
C5' |
H14 |
121.6 |
121.2 |
| C5' |
C4' |
C3' |
H12 |
319.8 |
357.3 |
| PBT |
O5' |
C5' |
H15 |
12.6 |
60.0 |
| PBT |
O5' |
C5' |
H16 |
129.7 |
300.1 |
| OAN |
PBT |
O5' |
OAG |
239.6 |
240.0 |
| O5' |
PBT |
OAN |
H17 |
121.7 |
300.0 |
| C5' |
C4' |
O4' |
H14 |
238.7 |
238.8 |
| C4' |
O4' |
C1' |
C2' |
7.5 |
319.9 |
| C4' |
O4' |
C1' |
H9 |
123.3 |
78.5 |
| O4' |
C4' |
C3' |
H12 |
79.2 |
116.7 |
| C2' |
C1' |
O4' |
H9 |
244.3 |
241.5 |
| O4' |
C1' |
C2' |
H10 |
211.7 |
278.8 |
| O4' |
C4' |
C3' |
H14 |
241.3 |
240.6 |
| O3' |
C3' |
C4' |
H12 |
125.3 |
122.6 |
| C4' |
C3' |
O3' |
H13 |
180.0 |
176.2 |
| C4' |
C3' |
C2' |
H10 |
158.6 |
97.3 |
| O5' |
PBT |
OAG |
OAN |
241.5 |
240.1 |
| OAG |
PBT |
OAN |
H17 |
360.0 |
180.0 |
| O5' |
PBT |
OAN |
OAG |
121.8 |
120.0 |
| CAP |
CAQ |
CBF |
CBG |
175.0 |
180.0 |
| CBF |
CAQ |
CAP |
H5 |
180.0 |
180.1 |
| CAP |
CBE |
CBD |
H1 |
33.5 |
0.1 |
| CBF |
CAQ |
CAP |
H4 |
179.1 |
180.0 |
| CAP |
CAQ |
CBF |
H5 |
180.0 |
179.9 |
| CAQ |
CBF |
CBG |
CBH |
181.1 |
295.0 |
| OAD |
CBD |
CBE |
H1 |
180.0 |
179.6 |
| SBB |
CBE |
CBD |
H1 |
214.6 |
180.3 |
| CBE |
CBD |
OAD |
H1 |
180.0 |
180.4 |
| C1' |
NBS |
CAR |
H7 |
2.4 |
0.0 |
| O4' |
C1' |
C2' |
H9 |
115.7 |
118.7 |
| C3' |
C2' |
C1' |
H10 |
117.9 |
118.2 |
| O2' |
C2' |
C1' |
H10 |
235.3 |
236.4 |
| NBS |
CAR |
CBG |
CBH |
353.0 |
0.3 |
| CBF |
CBG |
CAR |
CBH |
191.1 |
179.7 |
| CAR |
CBG |
CBH |
NAV |
6.7 |
359.7 |
| CAR |
CBG |
CBH |
OAE |
180.6 |
179.7 |
| O4' |
C4' |
C3' |
O3' |
204.6 |
239.3 |
| C4' |
C3' |
O3' |
H12 |
235.8 |
237.3 |
| O3' |
C3' |
C2' |
H10 |
278.8 |
216.0 |
| O4' |
C4' |
C3' |
C2' |
322.6 |
357.9 |
| C3' |
C2' |
C1' |
H9 |
213.9 |
278.3 |
| C1' |
C2' |
C3' |
H10 |
242.2 |
241.8 |
| O2' |
C2' |
C3' |
H10 |
125.5 |
123.6 |
| CBG |
CBF |
CAQ |
H5 |
355.0 |
0.1 |
| CAR |
CBG |
CBF |
CBH |
168.3 |
180.3 |
| CBF |
CBG |
CBH |
NAV |
175.7 |
180.0 |
| CBF |
CBG |
CBH |
OAE |
349.6 |
0.0 |
| CBI |
NBS |
CAR |
H7 |
184.3 |
180.0 |
| NBS |
CBI |
NAV |
H8 |
180.4 |
180.2 |
| OAE |
CBH |
CBG |
NAV |
174.0 |
180.0 |
| CBG |
CBH |
NAV |
H8 |
176.4 |
180.0 |
| O2' |
C2' |
C1' |
H9 |
331.2 |
36.6 |
| C1' |
C2' |
O2' |
H10 |
123.7 |
123.6 |
| C3' |
C2' |
O2' |
H10 |
235.4 |
236.4 |
| CAR |
NBS |
CBI |
OAF |
176.0 |
180.0 |
| OAF |
CBI |
NAV |
H8 |
3.6 |
360.0 |
| CAR |
NBS |
CBI |
NAV |
359.2 |
359.7 |
| CBH |
NAV |
CBI |
H8 |
180.0 |
180.0 |
| CBG |
CBH |
NAV |
OAE |
174.0 |
180.0 |
| CBI |
NAV |
CBH |
H8 |
180.0 |
180.0 |
| CBG |
CBH |
OAE |
NAV |
185.9 |
180.0 |
| OAE |
CBH |
NAV |
H8 |
2.4 |
0.0 |
| H4 |
CAP |
CAQ |
CBF |
179.1 |
180.0 |
| H4 |
CAP |
CAQ |
H5 |
359.1 |
359.9 |
| CAP |
CAQ |
H5 |
CBF |
180.0 |
180.1 |
| H5 |
CAQ |
CAP |
H4 |
359.1 |
359.9 |
| H5 |
CAQ |
CBF |
CBG |
355.0 |
0.1 |
| H7 |
CAR |
NBS |
CBI |
184.3 |
180.0 |
| H7 |
CAR |
CBG |
CBH |
172.9 |
180.2 |
| O4' |
C1' |
H9 |
C2' |
245.9 |
245.9 |
| H9 |
C1' |
C2' |
H10 |
95.9 |
160.2 |
| H10 |
C2' |
C1' |
H9 |
95.9 |
160.2 |
| H11 |
O2' |
C2' |
H10 |
56.4 |
56.4 |
| H12 |
C3' |
O3' |
H13 |
304.2 |
298.9 |
| H12 |
C3' |
C2' |
H10 |
42.2 |
338.5 |
| H13 |
O3' |
C3' |
H12 |
304.2 |
298.9 |
| O4' |
C4' |
H14 |
C3' |
115.7 |
117.8 |
| H14 |
C4' |
C3' |
H12 |
197.9 |
236.1 |
| H15 |
C5' |
O5' |
PBT |
12.6 |
60.0 |
| O5' |
C5' |
H15 |
H16 |
115.4 |
240.1 |
| H15 |
C5' |
C4' |
H14 |
45.1 |
65.3 |
| H16 |
C5' |
O5' |
PBT |
129.7 |
300.1 |
| O5' |
C5' |
H16 |
H15 |
244.6 |
119.9 |
| H16 |
C5' |
C4' |
H14 |
288.0 |
185.3 |
| H17 |
OAN |
PBT |
OAG |
360.0 |
180.0 |
| O6 |
C6 |
H21 |
H22 |
116.9 |
240.0 |
| H21 |
C6 |
O6 |
H23 |
300.9 |
60.0 |
| H21 |
C6 |
C5 |
H20 |
192.6 |
65.0 |
| O6 |
C6 |
H22 |
H21 |
243.1 |
120.0 |
| H22 |
C6 |
O6 |
H23 |
59.0 |
300.0 |
| H22 |
C6 |
C5 |
H20 |
74.5 |
185.0 |
| H23 |
O6 |
C6 |
H21 |
300.9 |
60.0 |
| H23 |
O6 |
C6 |
H22 |
59.0 |
300.0 |
| O4 |
C4 |
H24 |
C3 |
239.3 |
239.9 |
| H24 |
C4 |
C5 |
H20 |
294.9 |
302.5 |
| H24 |
C4 |
C3 |
C2 |
172.2 |
176.9 |
| H24 |
C4 |
C3 |
H26 |
55.5 |
57.1 |
| H25 |
O4 |
C4 |
C3 |
301.3 |
179.7 |
| H25 |
O4 |
C4 |
H24 |
61.9 |
299.8 |
| C4 |
C3 |
H26 |
C2 |
119.3 |
119.6 |
| H26 |
C3 |
C4 |
H24 |
55.5 |
57.1 |
| O3 |
C3 |
H26 |
C2 |
238.7 |
239.8 |
| H26 |
C3 |
C2 |
N2 |
305.3 |
303.0 |
| H26 |
C3 |
C2 |
H28 |
187.8 |
182.8 |
| H27 |
O3 |
C3 |
C2 |
305.6 |
179.6 |
| H27 |
O3 |
C3 |
H26 |
63.5 |
299.8 |
| C3 |
C2 |
H28 |
N2 |
121.1 |
120.2 |
| H28 |
C2 |
C3 |
H26 |
187.8 |
182.8 |
| H28 |
C2 |
C1 |
H19 |
52.3 |
57.7 |
| H28 |
C2 |
N2 |
CBC |
355.8 |
325.2 |
| H28 |
C2 |
N2 |
H29 |
175.8 |
145.2 |
| C2 |
N2 |
H29 |
CBC |
180.0 |
180.1 |
| H29 |
N2 |
C2 |
H28 |
175.8 |
145.2 |
| H29 |
N2 |
CBC |
CAA |
10.7 |
0.1 |
| CBC |
CAA |
H30 |
H31 |
120.0 |
120.0 |
| CBC |
CAA |
H30 |
H32 |
240.0 |
240.0 |
| H31 |
CAA |
H30 |
H32 |
120.0 |
120.0 |
| CBC |
CAA |
H31 |
H30 |
240.0 |
240.0 |
| CBC |
CAA |
H31 |
H32 |
120.0 |
120.0 |
| H30 |
CAA |
H31 |
H32 |
240.0 |
240.0 |
| CBC |
CAA |
H32 |
H30 |
120.0 |
120.1 |
| CBC |
CAA |
H32 |
H31 |
240.0 |
240.0 |
| H30 |
CAA |
H32 |
H31 |
120.0 |
120.0 |