PDB Chemical Component 3GL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3GL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.393 |
1.469 |
| CA |
C |
1.374 |
1.507 |
| CA |
CB |
1.569 |
1.530 |
| C |
O |
1.103 |
1.208 |
| CB |
CG |
1.517 |
1.530 |
| CG |
OH |
1.365 |
1.429 |
| CG |
CD |
1.649 |
1.507 |
| CD |
OE1 |
1.141 |
1.342 |
| CD |
OE2 |
1.121 |
1.208 |
| C |
OXT |
1.317 |
1.342 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
0.999 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB1C |
1.100 |
1.091 |
| CB |
HB2C |
1.101 |
1.090 |
| CG |
HG |
1.100 |
1.090 |
| OH |
HH |
0.950 |
0.966 |
| OE1 |
HE1 |
0.950 |
0.967 |
| OXT |
HXT |
0.950 |
0.968 |
Bond Angles for 3GL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
113.8 |
109.5 |
| N |
CA |
CB |
110.3 |
109.4 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
HA |
106.5 |
109.5 |
| C |
CA |
CB |
111.4 |
109.5 |
| CA |
C |
O |
116.2 |
119.9 |
| CA |
C |
OXT |
127.5 |
120.0 |
| C |
CA |
HA |
105.3 |
109.5 |
| CA |
CB |
CG |
113.9 |
109.5 |
| CB |
CA |
HA |
109.2 |
109.5 |
| CA |
CB |
HB1C |
108.0 |
109.4 |
| CA |
CB |
HB2C |
107.0 |
109.5 |
| O |
C |
OXT |
116.3 |
120.1 |
| CB |
CG |
OH |
116.4 |
109.4 |
| CB |
CG |
CD |
108.6 |
109.4 |
| CG |
CB |
HB1C |
108.0 |
109.5 |
| CG |
CB |
HB2C |
107.0 |
109.5 |
| CB |
CG |
HG |
107.1 |
109.5 |
| OH |
CG |
CD |
114.4 |
109.5 |
| OH |
CG |
HG |
100.2 |
109.5 |
| CG |
OH |
HH |
109.5 |
114.0 |
| CG |
CD |
OE1 |
119.2 |
120.0 |
| CG |
CD |
OE2 |
115.0 |
120.0 |
| CD |
CG |
HG |
109.5 |
109.5 |
| OE1 |
CD |
OE2 |
122.7 |
120.0 |
| CD |
OE1 |
HE1 |
109.5 |
117.1 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| HB1C |
CB |
HB2C |
113.0 |
109.4 |
Torsion Angles for 3GL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB |
126.0 |
120.0 |
| N |
CA |
C |
O |
129.8 |
340.0 |
| N |
CA |
C |
OXT |
309.8 |
160.1 |
| C |
CA |
N |
HA |
244.4 |
240.0 |
| N |
CA |
CB |
CG |
302.7 |
295.0 |
| CB |
CA |
N |
HA |
118.4 |
120.0 |
| N |
CA |
CB |
HB1C |
62.7 |
55.0 |
| N |
CA |
CB |
HB2C |
184.6 |
175.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| N |
CA |
C |
CB |
234.6 |
240.0 |
| C |
CA |
N |
H |
180.2 |
60.0 |
| C |
CA |
N |
H2 |
300.2 |
184.0 |
| N |
CA |
C |
HA |
116.3 |
120.0 |
| C |
CA |
CB |
CG |
175.3 |
175.0 |
| CB |
CA |
C |
HA |
241.7 |
240.0 |
| C |
CA |
CB |
HB1C |
295.3 |
295.0 |
| C |
CA |
CB |
HB2C |
57.2 |
54.9 |
| O |
C |
CA |
OXT |
180.0 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| N |
CA |
CB |
C |
127.4 |
120.0 |
| CB |
CA |
N |
H |
54.2 |
300.0 |
| CB |
CA |
N |
H2 |
174.2 |
64.0 |
| N |
CA |
CB |
HA |
243.3 |
240.0 |
| CB |
CA |
C |
O |
255.2 |
100.0 |
| CB |
CA |
C |
OXT |
75.2 |
280.0 |
| C |
CA |
CB |
HA |
115.9 |
120.0 |
| CA |
CB |
CG |
OH |
305.2 |
294.9 |
| CA |
CB |
CG |
CD |
174.5 |
175.0 |
| CG |
CB |
CA |
HB1C |
240.0 |
240.0 |
| CG |
CB |
CA |
HB2C |
118.0 |
120.1 |
| CA |
CB |
CG |
HG |
56.4 |
55.0 |
| HB1C |
CB |
CA |
HB2C |
238.1 |
240.1 |
| O |
C |
CA |
CB |
255.2 |
100.0 |
| CA |
C |
O |
OXT |
180.0 |
180.0 |
| O |
C |
CA |
HA |
13.5 |
220.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.1 |
| CG |
CB |
CA |
HA |
59.4 |
55.0 |
| CA |
CB |
CG |
HB1C |
120.0 |
120.0 |
| CA |
CB |
CG |
HB2C |
241.9 |
240.0 |
| OH |
CG |
CB |
CD |
130.7 |
119.9 |
| OH |
CG |
CB |
HG |
248.9 |
239.9 |
| CB |
CG |
OH |
HH |
150.4 |
300.0 |
| CB |
CG |
CD |
OE1 |
122.4 |
294.9 |
| CB |
CG |
CD |
OE2 |
321.8 |
115.0 |
| CD |
CG |
CB |
HG |
118.2 |
120.0 |
| HB1C |
CB |
CG |
HB2C |
121.9 |
120.0 |
| CB |
CG |
OH |
CD |
232.1 |
240.1 |
| OH |
CG |
CB |
HB1C |
185.2 |
175.0 |
| OH |
CG |
CB |
HB2C |
63.3 |
55.0 |
| CB |
CG |
OH |
HG |
115.1 |
120.0 |
| OH |
CG |
CD |
OE1 |
350.6 |
175.0 |
| OH |
CG |
CD |
OE2 |
190.0 |
355.1 |
| CD |
CG |
OH |
HG |
243.0 |
240.0 |
| CB |
CG |
CD |
OH |
131.8 |
119.9 |
| CD |
CG |
CB |
HB1C |
54.5 |
55.0 |
| CD |
CG |
CB |
HB2C |
292.6 |
295.0 |
| CB |
CG |
CD |
HG |
243.4 |
240.0 |
| OH |
CG |
CD |
HG |
111.6 |
120.1 |
| CD |
CG |
OH |
HH |
278.3 |
60.0 |
| OE1 |
CD |
CG |
OE2 |
160.7 |
179.9 |
| CG |
CD |
OE1 |
HE1 |
200.9 |
180.0 |
| CG |
CD |
OE1 |
OE2 |
200.9 |
180.1 |
| OE1 |
CD |
CG |
HG |
239.1 |
54.9 |
| CG |
CD |
OE2 |
OE1 |
159.9 |
179.9 |
| OE2 |
CD |
CG |
HG |
78.4 |
235.0 |
| OE2 |
CD |
OE1 |
HE1 |
360.0 |
360.0 |
| OXT |
C |
CA |
CB |
75.2 |
280.0 |
| CA |
C |
OXT |
O |
180.0 |
180.0 |
| OXT |
C |
CA |
HA |
193.5 |
40.0 |
| H |
N |
CA |
C |
180.2 |
60.0 |
| H |
N |
CA |
CB |
54.2 |
300.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
295.8 |
180.0 |
| H2 |
N |
CA |
C |
300.2 |
184.0 |
| H2 |
N |
CA |
CB |
174.2 |
64.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
HA |
55.8 |
304.0 |
| N |
CA |
HA |
C |
238.8 |
240.0 |
| N |
CA |
HA |
CB |
119.1 |
120.0 |
| HA |
CA |
N |
H |
295.8 |
180.0 |
| HA |
CA |
N |
H2 |
55.8 |
304.0 |
| C |
CA |
HA |
CB |
240.3 |
240.0 |
| HA |
CA |
C |
O |
13.5 |
220.0 |
| HA |
CA |
C |
OXT |
193.5 |
40.0 |
| HA |
CA |
CB |
CG |
59.4 |
55.0 |
| HA |
CA |
CB |
HB1C |
179.4 |
175.0 |
| HA |
CA |
CB |
HB2C |
301.3 |
295.0 |
| CA |
CB |
HB1C |
CG |
236.4 |
240.0 |
| HB1C |
CB |
CA |
HA |
179.4 |
175.0 |
| CA |
CB |
HB1C |
HB2C |
118.2 |
120.0 |
| HB1C |
CB |
CG |
OH |
185.2 |
175.0 |
| HB1C |
CB |
CG |
CD |
54.5 |
55.0 |
| CG |
CB |
HB1C |
HB2C |
241.8 |
240.0 |
| HB1C |
CB |
CG |
HG |
296.4 |
295.0 |
| CA |
CB |
HB2C |
CG |
122.5 |
120.0 |
| HB2C |
CB |
CA |
HA |
301.3 |
295.0 |
| CA |
CB |
HB2C |
HB1C |
241.2 |
240.1 |
| HB2C |
CB |
CG |
OH |
63.3 |
55.0 |
| HB2C |
CB |
CG |
CD |
292.6 |
295.0 |
| CG |
CB |
HB2C |
HB1C |
118.8 |
120.0 |
| HB2C |
CB |
CG |
HG |
174.4 |
175.1 |
| CB |
CG |
HG |
OH |
238.1 |
240.0 |
| CB |
CG |
HG |
CD |
117.5 |
120.0 |
| HG |
CG |
CB |
HB1C |
296.4 |
295.0 |
| HG |
CG |
CB |
HB2C |
174.4 |
175.1 |
| OH |
CG |
HG |
CD |
239.4 |
240.0 |
| HG |
CG |
OH |
HH |
35.3 |
180.0 |
| HG |
CG |
CD |
OE1 |
239.1 |
54.9 |
| HG |
CG |
CD |
OE2 |
78.4 |
235.0 |
| HH |
OH |
CG |
CD |
278.3 |
60.0 |
| HH |
OH |
CG |
HG |
35.3 |
180.0 |
| HE1 |
OE1 |
CD |
OE2 |
360.0 |
360.0 |