Atom Nomenclature for 3FT

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3FT

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
O4 O4
C5 C5
F6 F6
F7 F7
F8 F8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
F15 F15
C16 C16
N17 N17
C18 C18
C19 C19
C20 C20
C21 C21
O22 O22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
O28 O28
O29 O29
H1 H1
H2 H2
H9 H9
H12 H12
H13 H13
H17 H17
H18 H18
H19 H19
H241 1H24
H242 2H24
H251 1H25
H252 2H25
H261 1H26
H262 2H26
H29 H29