PDB Chemical Component 3EF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3EF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O C 1.243 1.208
C CA 1.552 1.507
C OXT 1.264 1.342
CA N 1.457 1.465
N CBN 1.336 1.348
N HN 1.000 0.970
CB CA 1.539 1.531
CA HA 1.100 1.089
CG CB 1.397 1.507
CB HB 1.100 1.090
CB HBA 1.100 1.089
CD1 CG 1.398 1.382
CG CD2 1.406 1.383
OH CZ 1.371 1.359
OH HOH 0.950 0.966
CE1 CZ 1.401 1.388
CZ CE2 1.395 1.387
CBM OAB 1.242 1.215
CBN OAC 1.235 1.212
OAD PBY 1.483 1.480
PBY OAG 1.483 1.610
OAG HOAG 0.951 0.968
CAL CAH 1.389 1.382
CAH CAK 1.395 1.382
CAH HAH 1.080 1.081
CAN CAI 1.403 1.382
CAM CAI 1.402 1.383
CAI HAI 1.080 1.080
CAO CAJ 1.401 1.383
CAJ CAP 1.399 1.384
CAJ HAJ 1.080 1.080
CAQ CAK 1.400 1.382
CAK HAK 1.080 1.081
CAR CAL 1.403 1.382
CAL HAL 1.080 1.080
CAS CAM 1.401 1.383
CAM HAM 1.080 1.080
CAT CAN 1.402 1.382
CAN HAN 1.080 1.080
CAO CAU 1.402 1.381
CAO HAO 1.080 1.079
CAP CAV 1.403 1.380
CAP HAP 1.080 1.081
CBP CAQ 1.396 1.382
CAQ HAQ 1.080 1.080
CAR CBP 1.397 1.383
CAR HAR 1.080 1.079
CBQ CAS 1.396 1.383
CAS HAS 1.080 1.079
CBQ CAT 1.410 1.382
CAT HAT 1.080 1.080
CAU CBT 1.402 1.393
CAU HAU 1.080 1.080
CAV CBT 1.400 1.393
CAV HAV 1.080 1.079
CBU CBA 1.342 1.424
CBA CBS 1.352 1.353
CBA HBAA 1.080 1.080
OBJ CBB 1.453 1.451
CBB CBP 1.422 1.506
CBB HBB 1.100 1.090
CBB HBBA 1.100 1.090
CBS CBC 1.537 1.506
CBC CBV 1.547 1.530
CBC HBC 1.100 1.090
CBC HBCA 1.100 1.090
CBE CBX 1.542 1.530
CBE CBQ 1.426 1.507
CBE HBE 1.100 1.090
CBE HBEA 1.100 1.090
CBV CBF 1.526 1.530
CBF PBY 1.785 1.823
CBF HBF 1.100 1.090
CBF HBFA 1.100 1.089
CBU NBG 1.327 1.310
NBG OBK 1.441 1.209
CBX NBI 1.470 1.465
NBI CBM 1.337 1.348
NBI HNBI 1.000 0.970
CBM OBJ 1.354 1.347
OBK CBS 1.358 1.340
CBN CBV 1.526 1.508
CBT CBU 1.357 1.484
CBV HBV 1.100 1.090
PBY CBX 1.825 1.824
CBX HBX 1.099 1.090
CE1 CD1 1.402 1.382
CD1 HD1 1.080 1.080
CE2 CD2 1.399 1.382
CD2 HD2 1.080 1.079
CE1 HE1 1.080 1.080
CE2 HE2 1.080 1.080
OXT HOXT 0.950 0.968

Bond Angles for 3EF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O C OXT 124.9 120.0
C CA HA 108.0 109.5
C OXT HOXT 109.5 117.0
CA N HN 119.6 120.0
CB CA HA 108.2 109.5
CG CB HB 106.6 109.5
CG CB HBA 106.6 109.5
HB CB HBA 109.5 109.5
CD1 CG CD2 119.6 120.1
CG CD2 HD2 119.9 120.0
CE1 CZ CE2 119.8 119.9
CZ CE1 HE1 119.9 120.0
CZ CE2 HE2 119.9 120.0
OAD PBY OAG 116.2 109.5
OAD PBY CBX 109.2 109.5
PBY OAG HOAG 109.5 114.1
OAG PBY CBX 106.6 109.5
CAL CAH HAH 120.3 120.0
CAK CAH HAH 120.3 120.0
CAH CAK HAK 119.8 120.0
CAN CAI HAI 120.2 120.0
CAM CAI HAI 120.1 119.9
CAS CAM CAI 119.9 120.0
CAI CAM HAM 120.1 120.0
CAO CAJ CAP 119.7 120.2
CAO CAJ HAJ 120.2 119.9
CAP CAJ HAJ 120.2 119.9
CAJ CAP CAV 119.8 120.2
CAJ CAP HAP 120.1 119.9
CAQ CAK HAK 119.7 120.0
CAR CAL HAL 119.9 120.0
CAS CAM HAM 120.1 120.0
CBQ CAS CAM 121.3 120.0
CAM CAS HAS 119.3 120.0
CAT CAN HAN 120.1 120.0
CBQ CAT CAN 120.9 120.0
CAU CAO HAO 120.0 120.0
CAO CAU CBT 120.8 119.9
CAO CAU HAU 119.6 120.0
CAV CAP HAP 120.1 119.9
CAP CAV CBT 121.1 119.8
CAP CAV HAV 119.5 120.1
CBP CAQ HAQ 119.8 120.0
CBP CAR HAR 119.7 120.0
CAR CBP CBB 120.5 120.0
CBQ CAS HAS 119.4 120.0
CAS CBQ CAT 118.4 120.0
CBE CBQ CAS 120.0 120.0
CBQ CAT HAT 119.6 119.9
CBE CBQ CAT 121.6 120.0
CBT CAU HAU 119.6 120.1
CAU CBT CAV 118.6 119.8
CAU CBT CBU 119.7 120.1
CBT CAV HAV 119.5 120.1
CAV CBT CBU 121.6 120.1
CBU CBA HBAA 126.3 128.0
CBS CBA HBAA 126.2 128.1
CBA CBS CBC 126.1 126.7
CBA CBS OBK 110.9 106.7
OBJ CBB CBP 108.2 109.5
OBJ CBB HBB 109.8 109.5
OBJ CBB HBBA 109.8 109.5
CBP CBB HBB 109.8 109.5
CBP CBB HBBA 109.8 109.5
HBB CBB HBBA 109.5 109.4
CBS CBC CBV 112.5 109.5
CBS CBC HBC 108.7 109.5
CBS CBC HBCA 108.7 109.5
CBV CBC HBC 108.7 109.5
CBV CBC HBCA 108.7 109.4
CBC CBV CBF 107.0 109.5
CBC CBV CBN 107.4 109.4
CBC CBV HBV 111.2 109.5
HBC CBC HBCA 109.5 109.5
CBE CBX HBX 111.0 109.5
CBQ CBE HBE 109.3 109.5
CBQ CBE HBEA 109.2 109.5
HBE CBE HBEA 109.5 109.5
CBV CBF HBF 109.1 109.5
CBV CBF HBFA 109.1 109.5
HBF CBF HBFA 109.5 109.5
NBG OBK CBS 103.7 111.9
CBX NBI HNBI 118.1 120.0
PBY CBX NBI 104.3 109.4
NBI CBX HBX 112.0 109.5
CBN CBV HBV 111.5 109.5
PBY CBX HBX 107.6 109.5
CE1 CD1 HD1 120.0 119.9
CE2 CD2 HD2 119.9 120.0

Torsion Angles for 3EF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O C CA HA 57.4 240.0
O C OXT HOXT 360.0 0.0
C CA N HN 106.2 95.0
CB CA C HA 241.4 240.0
OXT C CA HA 239.8 60.0
N CBN CBV HBV 38.9 60.0
C CA CB HA 118.5 120.0
CB CA N HN 343.3 335.1
HA CA N HN 224.0 215.1
CG CB CA HA 156.4 55.0
HB CB CG HBA 116.9 120.1
HB CB CA HA 278.0 175.0
CG CB HB HBA 245.1 240.0
HBA CB CA HA 34.9 295.0
CG CB HBA HB 114.9 120.0
CD1 CG CB HB 337.4 150.3
CD1 CG CB HBA 220.5 30.2
CD1 CG CD2 HD2 178.7 179.7
CD2 CG CB HB 154.6 330.0
CD2 CG CB HBA 37.7 209.9
CE2 CD2 CG HD2 180.0 180.0
OH CZ CE1 HE1 0.6 0.3
OH CZ CE2 HE2 359.4 0.0
CE1 CZ CE2 HE2 179.6 180.3
CZ CE1 CD1 HD1 179.1 180.0
CE2 CZ CE1 HE1 180.4 180.0
CZ CE2 CD2 HD2 180.8 180.0
OAD PBY OAG HOAG 360.0 180.0
OAG PBY OAD CBX 239.5 240.0
OAD PBY CBX NBI 299.9 295.0
OAD PBY CBX HBX 180.8 175.0
OAD PBY OAG CBX 121.9 120.0
OAG PBY CBX NBI 66.2 55.0
OAG PBY CBX HBX 307.0 295.0
HOAG OAG PBY CBX 238.1 59.9
CAK CAH CAL HAH 180.0 179.7
CAL CAH CAK HAK 179.4 180.3
CAL CAH CAK HAH 180.0 180.3
CAQ CAK CAH HAK 180.0 180.1
HAH CAH CAK HAK 359.4 0.0
CAM CAI CAN HAI 180.0 180.0
CAN CAI CAM HAM 179.6 180.0
CBQ CAT CAN CAI 359.0 0.5
CAN CAI CAM HAI 180.0 180.0
CAS CAM CAI HAM 180.0 180.0
CBQ CAS CAM CAI 359.3 360.0
CAI CAM CAS HAS 179.3 180.0
CAS CAM CAI HAI 179.5 180.0
HAI CAI CAM HAM 359.6 0.0
CAP CAJ CAO HAJ 180.0 180.3
CAO CAJ CAP CAV 0.2 359.7
CAO CAJ CAP HAP 180.2 179.8
CAO CAJ CAP HAJ 180.0 179.7
CAV CAP CAJ HAP 180.0 179.9
CAJ CAP CAV CBT 0.6 0.6
CAJ CAP CAV HAV 180.6 180.0
CAO CAJ HAJ CAP 180.0 180.3
HAJ CAJ CAP CAV 180.2 180.0
HAJ CAJ CAP HAP 0.2 0.1
CAQ CAK CAH HAH 179.4 180.1
CAH CAK CAQ HAK 180.0 179.9
HAK CAK CAH HAH 359.4 0.0
CAR CAL CAH HAH 180.2 180.3
HAL CAL CAH HAH 0.2 0.3
CAI CAM CAS HAM 180.0 180.0
CBQ CAS CAM HAS 180.0 179.9
CAM CAS CBQ CAT 1.0 0.3
CBE CBQ CAS CAM 179.6 180.0
HAM CAM CAI HAI 359.6 0.0
CAS CAM HAM CAI 180.0 180.0
CBQ CAS CAM HAM 179.3 180.0
HAM CAM CAS HAS 359.3 0.0
CAT CAN CAI HAI 181.3 179.8
CAS CBQ CAT CAN 359.9 359.5
CBQ CAT CAN HAT 180.0 180.2
CBE CBQ CAT CAN 181.2 179.8
HAN CAN CAI HAI 1.3 360.0
CBQ CAT CAN HAN 179.0 180.3
CAU CAO CAJ CAP 359.8 0.0
CAU CAO CAJ HAJ 179.8 179.7
CBT CAU CAO HAU 180.0 180.0
CAO CAU CBT CAV 1.6 0.3
CAO CAU CBT CBU 178.3 180.0
HAO CAO CAJ CAP 179.8 180.0
HAO CAO CAJ HAJ 359.9 359.7
HAO CAO CAU CBT 179.2 180.0
HAO CAO CAU HAU 359.2 360.0
CAV CAP CAJ HAJ 180.2 180.0
CAJ CAP CAV HAP 180.0 180.1
CAU CBT CAV CAP 358.5 359.4
CBT CAV CAP HAV 180.0 180.6
CAP CAV CBT CBU 181.9 179.8
HAP CAP CAJ HAJ 0.2 0.1
CAJ CAP HAP CAV 180.0 179.9
HAP CAP CAV CBT 180.6 180.5
HAP CAP CAV HAV 0.6 359.9
CBP CAQ CAK HAK 180.9 180.0
HAQ CAQ CAK HAK 0.9 0.1
CBP CAR CAL HAL 179.9 179.4
CAR CBP CAQ HAQ 179.3 179.4
OBJ CBB CBP CAR 306.1 90.0
CAR CBP CBB HBB 186.3 330.0
CAR CBP CBB HBBA 65.9 210.0
HAR CAR CAL HAL 360.0 360.0
HAR CAR CBP CBB 0.1 359.4
CAM CAS CBQ HAS 180.0 180.1
CAS CBQ CAT HAT 179.9 179.7
CBE CBQ CAS CAT 178.7 179.7
CAS CBQ CBE HBE 148.7 325.9
CAS CBQ CBE HBEA 29.0 205.9
HAS CAS CAM CAI 179.3 180.0
HAS CAS CAM HAM 359.3 0.0
CBQ CAS HAS CAM 180.0 180.1
HAS CAS CBQ CAT 181.0 180.2
CBE CBQ CAS HAS 359.7 359.9
CAT CBQ CAS CAM 1.0 0.3
CAT CBQ CAS HAS 181.0 180.2
CBE CBQ CAT CAS 181.3 180.3
CAT CBQ CBE HBE 327.3 145.7
CAT CBQ CBE HBEA 207.6 25.6
HAT CAT CAN HAN 359.0 0.1
CBQ CAT HAT CAN 180.0 179.8
CBE CBQ CAT HAT 1.3 360.0
CBT CAU CAO HAO 179.2 180.0
CAO CAU CBT HAU 180.0 180.0
CAP CAV CBT CAU 358.5 359.4
CAU CBT CAV HAV 178.5 180.0
CAV CBT CAU CBU 183.3 180.3
HAU CAU CAO HAO 359.2 360.0
CAO CAU HAU CBT 180.0 180.0
HAU CAU CBT CAV 181.6 180.3
HAU CAU CBT CBU 358.3 360.0
CBT CAV CAP HAP 180.6 180.5
CAP CAV CBT HAV 180.0 179.4
CAV CBT CAU HAU 181.6 180.3
CAU CBT CAV CBU 176.6 179.7
HAV CAV CAP HAP 0.6 359.9
CAP CAV HAV CBT 180.0 180.6
HAV CAV CBT CBU 1.9 0.3
CAU CBT CBU CBA 169.2 180.1
CAV CBT CBU CBA 345.8 359.7
CBS CBA CBU HBAA 180.0 179.8
CBU CBA CBS HBAA 180.0 180.2
CBA CBS CBC CBV 223.5 90.0
CBA CBS CBC HBC 343.9 210.0
CBA CBS CBC HBCA 103.0 330.0
NBG OBK CBS CBA 360.0 359.6
HBAA CBA CBS CBC 359.5 0.1
HBAA CBA CBS OBK 179.6 180.0
CAR CBP CBB OBJ 306.1 90.0
CBP CBB OBJ HBB 240.2 239.9
CBP CBB OBJ HBBA 119.8 120.0
HBB CBB OBJ HBBA 239.6 240.1
CBB CBP CAQ HAQ 359.5 0.3
CBB CBP CAR HAR 0.1 359.4
OBJ CBB CBP HBB 119.8 120.0
OBJ CBB CBP HBBA 240.2 240.0
HBB CBB CBP HBBA 120.4 120.0
OBJ CBB HBB CBP 241.2 239.9
OBJ CBB HBB HBBA 120.6 120.0
CBP CBB HBB HBBA 239.4 240.0
OBJ CBB HBBA CBP 118.8 120.0
OBJ CBB HBBA HBB 239.4 240.0
CBP CBB HBBA HBB 120.6 120.0
CBC CBS CBA HBAA 359.5 0.1
CBA CBS CBC OBK 180.1 179.9
CBV CBC CBS HBC 239.5 240.0
CBV CBC CBS HBCA 120.5 119.9
CBS CBC CBV CBF 192.4 185.0
CBS CBC CBV CBN 76.5 65.0
CBS CBC CBV HBV 314.3 305.0
HBC CBC CBS HBCA 240.9 239.9
CBS CBC CBV HBC 120.5 120.0
CBS CBC CBV HBCA 239.5 240.0
HBC CBC CBV HBCA 119.1 120.0
CBC CBV CBF HBF 277.1 315.0
CBC CBV CBF HBFA 36.6 195.0
CBN CBV CBC HBV 122.2 120.0
CBS CBC HBC CBV 237.2 240.0
CBS CBC HBC HBCA 118.6 120.0
CBV CBC HBC HBCA 241.4 240.0
HBC CBC CBV CBF 71.9 65.0
HBC CBC CBV CBN 316.1 305.0
HBC CBC CBV HBV 193.9 185.0
CBS CBC HBCA CBV 122.8 120.0
CBS CBC HBCA HBC 241.4 240.0
CBV CBC HBCA HBC 118.6 120.0
HBCA CBC CBV CBF 312.8 304.9
HBCA CBC CBV CBN 197.0 185.0
HBCA CBC CBV HBV 74.8 65.0
CBE CBX NBI HNBI 314.0 315.0
NBI CBX CBE HBX 237.4 239.9
PBY CBX CBE HBX 122.1 120.0
CAS CBQ CBE CAT 181.4 180.3
CBQ CBE CBX HBX 59.1 54.9
HBE CBE CBQ HBEA 119.7 120.1
HBE CBE CBQ CAS 148.7 325.9
HBE CBE CBQ CAT 327.3 145.7
HBE CBE CBX HBX 179.2 175.0
CBQ CBE HBE HBEA 240.4 240.0
HBEA CBE CBQ CAS 29.0 205.9
HBEA CBE CBQ CAT 207.6 25.6
HBEA CBE CBX HBX 299.0 295.0
CBQ CBE HBEA HBE 119.6 120.1
CBF CBV CBC HBC 71.9 65.0
CBF CBV CBC HBCA 312.8 304.9
CBC CBV CBF CBN 244.6 240.0
CBC CBV CBF HBV 121.8 120.0
HBF CBF CBV HBFA 240.4 120.0
CBF PBY OAG HOAG 124.4 300.0
CBF PBY CBX HBX 61.2 55.0
CBV CBF HBF HBFA 119.3 239.9
CBV CBF HBFA HBF 240.7 120.0
CAU CBT CBU NBG 346.2 0.0
CAV CBT CBU NBG 162.7 179.7
NBG CBU CBA HBAA 180.7 180.2
CBA CBS OBK NBG 360.0 359.6
CBE CBX NBI HBX 121.9 120.1
PBY CBX NBI HBX 243.9 240.0
PBY CBX NBI HNBI 76.0 75.0
HNBI NBI CBX HBX 192.1 195.0
CBM OBJ CBB CBP 185.5 180.0
CBM OBJ CBB HBB 305.3 300.0
CBM OBJ CBB HBBA 65.7 60.0
OBK CBS CBA HBAA 179.6 180.0
CBA CBS OBK CBC 179.9 180.1
OBK CBS CBC CBV 43.4 270.1
OBK CBS CBC HBC 163.8 30.1
OBK CBS CBC HBCA 282.9 150.1
CBN CBV CBC HBC 316.1 305.0
CBN CBV CBC HBCA 197.0 185.0
CBC CBV CBN CBF 115.1 120.0
CBC CBV CBN HBV 237.9 240.0
CBN CBV CBF HBF 32.5 75.0
CBN CBV CBF HBFA 152.1 315.0
CBU CBT CAU HAU 358.3 360.0
CAU CBT CBU CAV 183.4 180.3
CBU CBT CAV HAV 1.9 0.3
CBT CBU CBA HBAA 357.9 0.2
HBV CBV CBC HBC 193.9 185.0
HBV CBV CBC HBCA 74.8 65.0
CBC CBV HBV CBF 240.7 239.9
CBC CBV HBV CBN 119.9 120.0
HBV CBV CBF HBF 155.3 195.0
HBV CBV CBF HBFA 274.9 75.0
OAD PBY CBX OAG 233.8 240.0
CBX PBY OAG HOAG 238.1 59.9
CBE CBX PBY HBX 236.0 240.0
NBI CBX PBY HBX 119.1 120.0
HBX CBX NBI HNBI 192.1 195.0
PBY CBX HBX NBI 114.1 120.0
HD1 CD1 CG CD2 181.3 180.3
CG CD2 CE2 HD2 180.0 180.0
HE1 CE1 CZ CE2 180.4 180.0
HE1 CE1 CD1 HD1 359.1 359.7
HE2 CE2 CD2 HD2 0.8 0.0