PDB Chemical Component 3DR

Ideal Model

Chemical Description

Name 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
Synonyms ABASIC DIDEOXYRIBOSE
Formula C5 H11 O6 P
Formal charge 0
Molecular weight 198.111 g/mol
Component type DNA LINKING

Chemical features

Atom count 23
Chiral atom count 2
Chiral atoms C4' C3'
Observed leaving atoms OP3 HO3'
Bond count 23
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol
Systematic name (OpenEye OEToolkits) [(2R,3S)-3-hydroxyoxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1CCO[C@@H]1CO[P](O)(O)=O
SMILES (CACTVS) O[CH]1CCO[CH]1CO[P](O)(O)=O
Stereo SMILES (OpenEye) C1CO[C@@H]([C@H]1O)COP(=O)(O)O
InChI descriptor InChI=1S/C5H11O6P/c6-4-1-2-10-5(4)3-11-12(7,8)9/h4-6H,1-3H2,(H2,7,8,9)/t4-,5+/m0/s1
InChIKey descriptor BVOBPNSQIRMLCA-CRCLSJGQSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1QUM
Processing site RCSB