PDB Chemical Component 3D6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3D6

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N08	C07	1.465	1.468
C07	C06	1.544	1.530
C06	C05	1.538	1.530
C05	C04	1.538	1.530
N01	C02	1.461	1.348
C04	C03	1.543	1.530
C02	C03	1.548	1.508
C02	O23	1.193	1.212
C03	N09	1.478	1.469
C22	C21	1.381	1.380
C22	C11	1.396	1.383
N09	C10	1.467	1.469
C21	C14	1.389	1.393
C10	C11	1.541	1.507
C11	C12	1.394	1.382
C20	N19	1.321	1.317
C20	C15	1.393	1.394
N19	C18	1.327	1.319
C14	C15	1.530	1.484
C14	C13	1.395	1.394
C15	C16	1.397	1.398
C18	C17	1.393	1.382
C12	C13	1.393	1.380
C16	C17	1.394	1.384
C10	H1	1.100	1.090
C10	H2	1.100	1.090
C13	H3	1.080	1.080
C17	H4	1.080	1.080
C20	H5	1.080	1.080
C21	H6	1.081	1.080
C22	H7	1.080	1.081
N01	H8	1.000	0.969
N01	H9	1.000	0.969
C03	H10	1.100	1.090
C04	H11	1.100	1.090
C04	H12	1.100	1.091
C05	H13	1.100	1.090
C05	H14	1.100	1.090
C06	H15	1.100	1.090
C06	H16	1.100	1.090
C07	H17	1.100	1.090
C07	H18	1.100	1.091
N08	H19	1.000	1.009
N08	H20	1.000	1.009
N09	H22	1.000	1.009
C12	H24	1.080	1.080
C16	H25	1.080	1.081
C18	H26	1.080	1.080

Bond Angles for 3D6

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N08	C07	H17	108.4	109.5
N08	C07	H18	108.3	109.5
C07	C06	H15	108.6	109.5
C07	C06	H16	108.6	109.5
C06	C05	H13	108.8	109.5
C06	C05	H14	108.8	109.5
C05	C04	H11	107.6	109.5
C05	C04	H12	107.6	109.4
N01	C02	C03	119.9	120.0
N01	C02	O23	118.6	120.1
C02	N01	H8	120.0	120.0
C02	N01	H9	120.0	119.9
C04	C03	N09	112.1	109.5
C04	C03	H10	106.8	109.5
C03	C02	O23	121.5	120.0
C02	C03	N09	113.0	109.4
C02	C03	H10	106.7	109.5
N09	C03	H10	107.5	109.4
C03	N09	H22	108.1	111.0
C22	C21	C14	119.2	119.9
C22	C21	H6	120.4	120.1
C10	C11	C22	119.2	119.9
C22	C11	C12	119.6	120.2
C11	C22	H7	119.4	120.0
N09	C10	C11	111.9	109.5
N09	C10	H1	108.9	109.5
N09	C10	H2	108.8	109.5
C14	C21	H6	120.4	120.0
C10	C11	C12	121.2	119.9
C11	C10	H1	108.9	109.5
C11	C10	H2	108.9	109.5
C11	C12	H24	120.4	119.9
C20	N19	C18	122.3	121.9
N19	C20	H5	120.3	119.7
C20	C15	C16	120.7	118.9
N19	C18	H26	119.5	119.5
C14	C15	C16	119.7	120.6
C14	C13	H3	119.8	120.1
C15	C16	C17	117.5	118.3
C15	C16	H25	121.3	120.8
C18	C17	H4	120.4	120.4
C12	C13	H3	119.7	120.1
C16	C17	H4	120.5	120.3
H1	C10	H2	109.5	109.4
H8	N01	H9	120.0	120.1
H11	C04	H12	109.5	109.4
H13	C05	H14	109.5	109.5
H15	C06	H16	109.5	109.5
H17	C07	H18	109.5	109.4
H19	N08	H20	109.4	111.0

Torsion Angles for 3D6

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N08	C07	C06	H15	300.1	60.0
N08	C07	C06	H16	59.0	300.0
H17	C07	N08	H18	241.3	120.0
C07	C06	C05	H13	196.1	60.0
C07	C06	C05	H14	315.2	300.0
H15	C06	C07	H16	241.1	120.0
C06	C05	C04	H11	339.1	60.0
C06	C05	C04	H12	97.0	300.0
H13	C05	C06	H14	240.8	120.0
C05	C04	C03	N09	231.4	295.0
C05	C04	C03	H10	348.8	55.0
H11	C04	C05	H12	242.1	119.9
C03	C02	N01	O23	180.3	180.0
N01	C02	C03	N09	187.8	180.0
N01	C02	C03	H10	69.8	60.0
H8	N01	C02	H9	180.0	180.0
C04	C03	C02	O23	134.5	120.0
C02	C03	C04	N09	233.0	240.0
C02	C03	C04	H10	115.6	120.1
N09	C03	C04	H10	242.5	240.0
C04	C03	N09	H22	66.9	279.0
N01	C02	C03	O23	179.7	180.0
C03	C02	N01	H8	180.3	0.0
C03	C02	N01	H9	0.3	180.0
C04	C03	C02	N09	126.5	120.0
C04	C03	C02	H10	244.4	239.9
N09	C03	C02	H10	117.9	120.0
C02	C03	N09	H22	192.5	39.0
N01	C02	O23	C03	180.3	180.0
O23	C02	N01	H8	0.0	180.0
O23	C02	N01	H9	180.0	359.9
O23	C02	C03	N09	8.0	0.0
O23	C02	C03	H10	250.1	240.0
C04	C03	N09	H10	117.0	120.0
N09	C03	C02	O23	8.0	0.0
C02	C03	N09	H10	242.6	240.0
C03	N09	C10	C11	112.2	180.0
C03	N09	C10	H1	232.6	300.0
C03	N09	C10	H2	351.8	60.0
C10	C11	C22	C21	179.7	180.0
C14	C21	C22	H6	180.0	180.1
C11	C22	C21	C14	0.4	0.3
C11	C22	C21	H6	180.4	180.2
N09	C10	C11	C22	273.4	90.0
C10	C11	C22	C12	180.1	180.3
C22	C11	C10	H1	153.1	330.0
C22	C11	C10	H2	33.8	210.0
C22	C11	C12	H24	180.5	180.0
N09	C10	C11	C12	93.5	270.2
C11	C10	N09	H1	239.6	240.0
C11	C10	N09	H2	120.4	120.0
H1	C10	N09	H2	240.7	240.0
C22	C21	C14	H6	180.0	179.9
C21	C14	C15	C16	138.2	180.0
C21	C14	C13	H3	180.8	180.0
C22	C11	C10	C12	179.9	179.7
C10	C11	C22	H7	359.7	0.3
N09	C10	C11	H1	120.4	120.0
N09	C10	C11	H2	239.6	240.0
C10	C11	C12	H24	0.5	359.8
H1	C10	C11	H2	119.3	120.0
C10	C11	C12	C22	179.9	179.7
C12	C11	C22	H7	179.6	180.1
C12	C11	C10	H1	333.1	150.2
C12	C11	C10	H2	213.9	30.3
C11	C12	C13	H3	179.3	180.0
N19	C20	C15	C16	1.4	360.0
C20	N19	C18	H26	180.1	179.9
C14	C15	C20	C16	177.7	180.2
C20	C15	C16	C17	358.6	360.0
C20	C15	C16	H25	178.6	180.0
C18	N19	C20	H5	179.3	180.0
N19	C18	C17	H4	180.0	180.1
C20	C15	C14	C16	182.3	179.7
C15	C14	C13	H3	359.5	0.0
C14	C15	C16	C17	181.0	179.7
C14	C15	C16	H25	1.0	359.7
C12	C13	C14	H3	180.0	179.7
C15	C16	C17	H4	180.7	179.9
C16	C17	C18	H4	180.0	179.9
C10	C11	C12	C13	180.5	179.7
C14	C13	C12	H3	180.0	180.3
C15	C16	C17	H25	180.0	180.0
C18	C17	C16	H4	180.0	180.1
H1	C10	C11	C22	153.1	330.0
N09	C10	H1	C11	237.8	240.0
N09	C10	H1	H2	118.9	120.0
H1	C10	C11	C12	333.1	150.2
C11	C10	H1	H2	241.1	240.0
H2	C10	C11	C22	33.8	210.0
N09	C10	H2	C11	122.2	120.0
N09	C10	H2	H1	241.1	240.0
H2	C10	C11	C12	213.9	30.3
C11	C10	H2	H1	118.9	120.0
H5	C20	N19	C18	179.3	180.0
H5	C20	C15	C16	181.4	180.0
C22	C21	H6	C14	180.0	180.1
H7	C22	C21	C14	180.4	180.0
H7	C22	C21	H6	0.4	359.8
H7	C22	C11	C12	179.6	180.1
H8	N01	C02	C03	180.3	0.0
H8	N01	C02	O23	0.0	180.0
C02	N01	H8	H9	180.0	180.0
H9	N01	C02	C03	0.3	180.0
H9	N01	C02	O23	180.0	359.9
C02	N01	H9	H8	180.0	180.0
C04	C03	H10	N09	239.5	240.0
H10	C03	C02	O23	250.1	240.0
C02	C03	H10	N09	121.5	120.0
H10	C03	N09	H22	309.9	159.0
C05	C04	H11	H12	116.7	240.1
H11	C04	C03	N09	110.3	55.0
H11	C04	C03	H10	227.8	175.0
C05	C04	H12	H11	243.3	120.0
H12	C04	C03	N09	352.4	175.0
H12	C04	C03	H10	109.9	295.0
C06	C05	H13	H14	118.7	240.0
H13	C05	C04	H11	218.7	179.9
H13	C05	C04	H12	336.6	60.0
C06	C05	H14	H13	241.3	120.0
H14	C05	C04	H11	99.5	300.0
H14	C05	C04	H12	217.4	180.0
C07	C06	H15	H16	118.4	240.0
H15	C06	C05	H13	75.5	180.0
H15	C06	C05	H14	194.7	60.0
C07	C06	H16	H15	241.7	120.0
H16	C06	C05	H13	316.6	300.0
H16	C06	C05	H14	75.8	180.0
N08	C07	H17	H18	118.0	239.9
H17	C07	C06	H15	179.5	180.1
H17	C07	C06	H16	298.4	60.0
N08	C07	H18	H17	242.0	120.0
H18	C07	C06	H15	60.7	300.0
H18	C07	C06	H16	179.7	180.0
H19	N08	C07	H17	300.7	296.1
H19	N08	C07	H18	59.4	176.0
H20	N08	C07	H17	60.6	60.1
H20	N08	C07	H18	179.3	300.1
H22	N09	C03	H10	309.9	159.0
H22	N09	C10	C11	351.4	56.0
H22	N09	C10	H1	111.7	176.0
H22	N09	C10	H2	231.0	296.0
H24	C12	C13	H3	359.3	359.9
C15	C16	H25	C17	180.0	180.0
H25	C16	C17	H4	0.7	359.9
H26	C18	C17	H4	359.9	0.1