PDB Chemical Component 3D1

Ideal Model

Chemical Description

Name (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol
Synonyms 2'-DEOXYADENOSINE
Formula C10 H13 N5 O3
Formal charge 0
Molecular weight 251.242 g/mol
Component type NON-POLYMER

Chemical features

Atom count 31
Chiral atom count 3
Chiral atoms C4' C1' C3'
Bond count 33
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxyadenosine
Systematic name (OpenEye OEToolkits) (2R,3S,5R)-5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-ol

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO)O3
SMILES (CACTVS) Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO)O3
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)CO)O)N
InChI descriptor InChI=1S/C10H13N5O3/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(17)6(2-16)18-7/h3-7,16-17H,1-2H2,(H2,11,12,13)/t5-,6+,7+/m0/s1
InChIKey descriptor OLXZPDWKRNYJJZ-RRKCRQDMSA-N

Status Information

Last modified 2021-03-01
Created 2004-02-16
Release status REL
Model PDB code 1S2G
Processing site RCSB