PDB Chemical Component 3C9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 3C9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C22 |
C21 |
1.535 |
1.532 |
| C22 |
C23 |
1.543 |
1.534 |
| C21 |
N2 |
1.484 |
1.469 |
| C23 |
C18 |
1.546 |
1.531 |
| C26 |
C24 |
1.541 |
1.530 |
| C20 |
C24 |
1.525 |
1.530 |
| C20 |
S1 |
1.815 |
1.814 |
| N2 |
S1 |
1.664 |
1.656 |
| N2 |
C10 |
1.489 |
1.469 |
| O14 |
S1 |
1.435 |
1.421 |
| C24 |
C25 |
1.522 |
1.530 |
| C18 |
C10 |
1.532 |
1.532 |
| C18 |
N13 |
1.469 |
1.465 |
| S1 |
O15 |
1.413 |
1.422 |
| N13 |
C3 |
1.350 |
1.348 |
| O17 |
C3 |
1.217 |
1.216 |
| C3 |
N4 |
1.360 |
1.348 |
| C12 |
C16 |
1.350 |
1.344 |
| C12 |
C8 |
1.466 |
1.463 |
| N5 |
C8 |
1.353 |
1.331 |
| N5 |
C7 |
1.337 |
1.323 |
| C16 |
N11 |
1.384 |
1.366 |
| C8 |
C6 |
1.434 |
1.410 |
| N4 |
C7 |
1.395 |
1.396 |
| C7 |
C19 |
1.410 |
1.395 |
| N11 |
C6 |
1.373 |
1.376 |
| C6 |
N9 |
1.344 |
1.327 |
| C19 |
N9 |
1.339 |
1.318 |
| N4 |
H1 |
1.000 |
0.969 |
| C10 |
H2 |
1.101 |
1.089 |
| C10 |
H3 |
1.099 |
1.090 |
| N11 |
H4 |
1.000 |
0.971 |
| C12 |
H5 |
1.080 |
1.080 |
| N13 |
H6 |
1.000 |
0.970 |
| C16 |
H7 |
1.080 |
1.080 |
| C18 |
H8 |
1.100 |
1.090 |
| C19 |
H9 |
1.080 |
1.080 |
| C20 |
H10 |
1.100 |
1.090 |
| C20 |
H11 |
1.100 |
1.090 |
| C21 |
H12 |
1.100 |
1.091 |
| C21 |
H13 |
1.100 |
1.090 |
| C22 |
H14 |
1.100 |
1.090 |
| C22 |
H15 |
1.100 |
1.090 |
| C23 |
H16 |
1.100 |
1.090 |
| C23 |
H17 |
1.100 |
1.090 |
| C24 |
H18 |
1.100 |
1.090 |
| C25 |
H19 |
1.100 |
1.090 |
| C25 |
H20 |
1.100 |
1.090 |
| C25 |
H21 |
1.100 |
1.090 |
| C26 |
H22 |
1.100 |
1.090 |
| C26 |
H23 |
1.100 |
1.090 |
| C26 |
H24 |
1.100 |
1.090 |
Bond Angles for 3C9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C22 |
C21 |
H12 |
109.0 |
109.6 |
| C22 |
C21 |
H13 |
109.0 |
109.7 |
| C23 |
C22 |
H14 |
109.7 |
109.6 |
| C23 |
C22 |
H15 |
109.8 |
109.4 |
| C22 |
C23 |
H16 |
109.0 |
109.5 |
| C22 |
C23 |
H17 |
109.0 |
109.5 |
| C23 |
C18 |
H8 |
109.3 |
109.5 |
| C26 |
C24 |
H18 |
110.8 |
109.5 |
| C20 |
C24 |
C25 |
107.7 |
109.5 |
| C24 |
C20 |
H10 |
109.2 |
109.5 |
| C24 |
C20 |
H11 |
109.2 |
109.5 |
| C20 |
C24 |
H18 |
111.0 |
109.5 |
| N2 |
S1 |
O15 |
104.8 |
104.3 |
| N2 |
C10 |
H2 |
108.8 |
109.6 |
| N2 |
C10 |
H3 |
108.7 |
109.6 |
| O14 |
S1 |
O15 |
119.7 |
121.1 |
| C25 |
C24 |
H18 |
111.1 |
109.5 |
| C24 |
C25 |
H19 |
109.5 |
109.5 |
| C24 |
C25 |
H20 |
109.5 |
109.5 |
| C24 |
C25 |
H21 |
109.5 |
109.5 |
| C18 |
C10 |
H2 |
108.7 |
109.6 |
| C18 |
C10 |
H3 |
108.7 |
109.7 |
| C18 |
N13 |
H6 |
120.7 |
120.0 |
| C3 |
N4 |
C7 |
121.2 |
120.0 |
| C3 |
N4 |
H1 |
119.4 |
120.0 |
| C16 |
C12 |
H5 |
127.1 |
126.6 |
| C12 |
C16 |
H7 |
124.0 |
125.0 |
| C7 |
N5 |
C8 |
119.5 |
119.6 |
| N5 |
C8 |
C6 |
120.3 |
120.0 |
| N4 |
C7 |
N5 |
121.7 |
119.9 |
| N5 |
C7 |
C19 |
119.8 |
120.2 |
| C16 |
N11 |
H4 |
125.9 |
125.0 |
| C8 |
C6 |
N9 |
119.5 |
119.6 |
| N4 |
C7 |
C19 |
118.4 |
119.9 |
| C7 |
N4 |
H1 |
119.4 |
120.0 |
| C7 |
C19 |
N9 |
121.7 |
120.5 |
| C7 |
C19 |
H9 |
119.1 |
119.7 |
| H2 |
C10 |
H3 |
109.5 |
109.6 |
| H10 |
C20 |
H11 |
109.5 |
109.5 |
| H12 |
C21 |
H13 |
109.5 |
109.6 |
| H14 |
C22 |
H15 |
109.5 |
109.5 |
| H16 |
C23 |
H17 |
109.5 |
109.5 |
| H19 |
C25 |
H20 |
109.5 |
109.5 |
| H19 |
C25 |
H21 |
109.4 |
109.4 |
| H20 |
C25 |
H21 |
109.5 |
109.5 |
| H22 |
C26 |
H23 |
109.4 |
109.4 |
| H22 |
C26 |
H24 |
109.5 |
109.5 |
| H23 |
C26 |
H24 |
109.5 |
109.4 |
Torsion Angles for 3C9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H12 |
C21 |
C22 |
H13 |
240.6 |
120.4 |
| C23 |
C22 |
C21 |
H12 |
70.9 |
294.8 |
| C23 |
C22 |
C21 |
H13 |
190.4 |
174.4 |
| C22 |
C23 |
C18 |
H8 |
179.3 |
301.1 |
| H14 |
C22 |
C23 |
H15 |
120.4 |
120.1 |
| H16 |
C23 |
C22 |
H17 |
240.6 |
120.0 |
| C21 |
N2 |
C10 |
H2 |
86.5 |
173.6 |
| C21 |
N2 |
C10 |
H3 |
205.7 |
293.9 |
| C23 |
C18 |
C10 |
H2 |
281.9 |
185.6 |
| C23 |
C18 |
C10 |
H3 |
162.7 |
65.2 |
| C23 |
C18 |
N13 |
H6 |
277.2 |
265.1 |
| C26 |
C24 |
C20 |
H10 |
306.1 |
175.0 |
| C26 |
C24 |
C20 |
H11 |
65.8 |
55.0 |
| C20 |
C24 |
C26 |
H18 |
122.0 |
120.0 |
| C25 |
C24 |
C26 |
H18 |
238.3 |
240.0 |
| C26 |
C24 |
C25 |
H19 |
180.0 |
300.0 |
| C26 |
C24 |
C25 |
H20 |
300.0 |
60.0 |
| C26 |
C24 |
C25 |
H21 |
60.0 |
180.0 |
| C26 |
C24 |
C20 |
H18 |
238.1 |
240.0 |
| C25 |
C24 |
C20 |
H18 |
121.8 |
120.0 |
| C20 |
C24 |
C25 |
H19 |
296.7 |
60.0 |
| C20 |
C24 |
C25 |
H20 |
56.7 |
180.0 |
| C20 |
C24 |
C25 |
H21 |
176.7 |
300.0 |
| H10 |
C20 |
C24 |
H11 |
240.3 |
120.0 |
| O14 |
S1 |
N2 |
O15 |
233.5 |
232.1 |
| C10 |
N2 |
S1 |
O15 |
331.6 |
334.0 |
| C18 |
C10 |
N2 |
H2 |
239.6 |
240.3 |
| C18 |
C10 |
N2 |
H3 |
120.4 |
120.0 |
| H2 |
C10 |
N2 |
H3 |
240.8 |
239.7 |
| N2 |
S1 |
O14 |
O15 |
116.5 |
116.8 |
| C26 |
C24 |
C25 |
H18 |
121.5 |
120.0 |
| C25 |
C24 |
C20 |
H10 |
189.7 |
55.0 |
| C25 |
C24 |
C20 |
H11 |
309.4 |
295.0 |
| C20 |
C24 |
C25 |
H18 |
238.2 |
240.0 |
| H19 |
C25 |
C24 |
H20 |
240.0 |
240.0 |
| H19 |
C25 |
C24 |
H21 |
120.0 |
120.0 |
| H20 |
C25 |
C24 |
H21 |
240.0 |
240.0 |
| N2 |
C10 |
C18 |
H2 |
120.4 |
119.8 |
| N2 |
C10 |
C18 |
H3 |
239.6 |
240.2 |
| H2 |
C10 |
C18 |
H3 |
119.2 |
120.4 |
| N13 |
C18 |
C10 |
H2 |
165.9 |
65.7 |
| N13 |
C18 |
C10 |
H3 |
46.8 |
305.3 |
| N13 |
C3 |
N4 |
H1 |
183.6 |
354.9 |
| O17 |
C3 |
N4 |
H1 |
3.0 |
174.9 |
| C3 |
N4 |
C7 |
N5 |
351.6 |
5.1 |
| C3 |
N4 |
C7 |
C19 |
168.1 |
185.1 |
| C7 |
N4 |
C3 |
H1 |
180.0 |
180.0 |
| C12 |
C16 |
N11 |
H4 |
179.1 |
180.0 |
| N4 |
C7 |
N5 |
C8 |
176.7 |
180.0 |
| C8 |
N5 |
C7 |
C19 |
0.3 |
0.1 |
| N5 |
C8 |
C6 |
N9 |
359.9 |
0.0 |
| C7 |
N5 |
C8 |
C6 |
360.0 |
360.0 |
| N4 |
C7 |
N5 |
C19 |
176.4 |
179.9 |
| N5 |
C7 |
N4 |
H1 |
171.6 |
185.2 |
| N5 |
C7 |
C19 |
N9 |
359.5 |
359.9 |
| N5 |
C7 |
C19 |
H9 |
179.5 |
180.0 |
| C3 |
N4 |
C7 |
H1 |
180.0 |
180.0 |
| N5 |
C7 |
N4 |
C19 |
183.6 |
180.1 |
| N4 |
C7 |
C19 |
N9 |
183.0 |
180.0 |
| N4 |
C7 |
C19 |
H9 |
3.0 |
0.0 |
| C19 |
C7 |
N5 |
C8 |
0.3 |
0.1 |
| N4 |
C7 |
C19 |
N5 |
183.5 |
180.1 |
| C19 |
C7 |
N4 |
H1 |
348.1 |
5.1 |
| C7 |
C19 |
N9 |
C6 |
0.3 |
0.0 |
| C7 |
C19 |
N9 |
H9 |
180.0 |
180.0 |
| C3 |
N4 |
H1 |
C7 |
180.0 |
180.0 |
| H1 |
N4 |
C7 |
N5 |
171.6 |
185.2 |
| H1 |
N4 |
C7 |
C19 |
348.1 |
5.1 |
| N2 |
C10 |
H2 |
H3 |
118.7 |
120.3 |
| C18 |
C10 |
H2 |
H3 |
241.3 |
239.5 |
| N2 |
C10 |
H3 |
H2 |
241.3 |
239.7 |
| C18 |
C10 |
H3 |
H2 |
118.7 |
120.4 |
| H5 |
C12 |
C16 |
H7 |
0.9 |
0.1 |
| H7 |
C16 |
C12 |
H5 |
0.9 |
0.1 |
| H7 |
C16 |
N11 |
H4 |
359.2 |
360.0 |
| H8 |
C18 |
C10 |
H2 |
42.1 |
305.6 |
| H8 |
C18 |
C10 |
H3 |
283.0 |
185.2 |
| H8 |
C18 |
N13 |
H6 |
160.2 |
145.0 |
| C7 |
C19 |
H9 |
N9 |
180.0 |
180.0 |
| H10 |
C20 |
C24 |
C25 |
189.7 |
55.0 |
| C24 |
C20 |
H10 |
H11 |
119.5 |
240.0 |
| H10 |
C20 |
C24 |
H18 |
67.9 |
295.0 |
| H11 |
C20 |
C24 |
C25 |
309.4 |
295.0 |
| C24 |
C20 |
H11 |
H10 |
240.5 |
120.0 |
| H11 |
C20 |
C24 |
H18 |
187.6 |
175.0 |
| C22 |
C21 |
H12 |
H13 |
119.1 |
239.5 |
| C22 |
C21 |
H13 |
H12 |
240.9 |
120.4 |
| H14 |
C22 |
C21 |
H12 |
190.7 |
54.8 |
| H14 |
C22 |
C21 |
H13 |
310.2 |
294.5 |
| C23 |
C22 |
H14 |
H15 |
239.5 |
239.9 |
| H14 |
C22 |
C23 |
H16 |
64.2 |
58.6 |
| H14 |
C22 |
C23 |
H17 |
183.6 |
298.6 |
| H15 |
C22 |
C21 |
H12 |
311.1 |
174.9 |
| H15 |
C22 |
C21 |
H13 |
70.5 |
54.5 |
| C23 |
C22 |
H15 |
H14 |
120.5 |
120.2 |
| H15 |
C22 |
C23 |
H16 |
303.8 |
298.5 |
| H15 |
C22 |
C23 |
H17 |
63.2 |
178.5 |
| H16 |
C23 |
C22 |
H14 |
64.2 |
58.6 |
| H16 |
C23 |
C22 |
H15 |
303.8 |
298.5 |
| C22 |
C23 |
H16 |
H17 |
119.1 |
240.0 |
| H16 |
C23 |
C18 |
H8 |
59.0 |
61.3 |
| H17 |
C23 |
C22 |
H14 |
183.6 |
298.6 |
| H17 |
C23 |
C22 |
H15 |
63.2 |
178.5 |
| C22 |
C23 |
H17 |
H16 |
240.9 |
120.0 |
| H17 |
C23 |
C18 |
H8 |
299.6 |
181.2 |
| C20 |
C24 |
H18 |
C25 |
119.8 |
120.0 |
| H18 |
C24 |
C20 |
H10 |
67.9 |
295.0 |
| H18 |
C24 |
C20 |
H11 |
187.6 |
175.0 |
| H18 |
C24 |
C25 |
H19 |
58.5 |
180.0 |
| H18 |
C24 |
C25 |
H20 |
178.5 |
300.0 |
| H18 |
C24 |
C25 |
H21 |
298.5 |
60.0 |
| H19 |
C25 |
C24 |
H18 |
58.5 |
180.0 |
| C24 |
C25 |
H19 |
H20 |
120.0 |
120.0 |
| C24 |
C25 |
H19 |
H21 |
240.0 |
240.0 |
| H20 |
C25 |
H19 |
H21 |
120.0 |
120.0 |
| H20 |
C25 |
C24 |
H18 |
178.5 |
300.0 |
| C24 |
C25 |
H20 |
H19 |
240.0 |
240.0 |
| C24 |
C25 |
H20 |
H21 |
120.0 |
120.0 |
| H19 |
C25 |
H20 |
H21 |
240.1 |
240.0 |
| H21 |
C25 |
C24 |
H18 |
298.5 |
60.0 |
| C24 |
C25 |
H21 |
H19 |
120.0 |
120.0 |
| C24 |
C25 |
H21 |
H20 |
240.0 |
240.0 |
| H19 |
C25 |
H21 |
H20 |
120.0 |
120.0 |
| H22 |
C26 |
C24 |
H18 |
58.0 |
180.1 |
| H23 |
C26 |
H22 |
H24 |
120.0 |
120.0 |
| H23 |
C26 |
C24 |
H18 |
178.0 |
300.0 |
| H22 |
C26 |
H23 |
H24 |
240.0 |
240.0 |
| H24 |
C26 |
C24 |
H18 |
298.0 |
60.0 |
| H22 |
C26 |
H24 |
H23 |
119.9 |
120.0 |