Atom Nomenclature for 3BS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 3BS

Atom Name (V3) Atom Name (V2)
CAQ CAQ
CAR CAR
CAS CAS
CAH CAH
NAX NAX
OAY OAY
CAW CAW
CAV CAV
CAZ CAZ
CAU CAU
CAP CAP
NAO NAO
CAN CAN
SAT SAT
NAM NAM
CAL CAL
CAF CAF
CAE CAE
CLAG CLAG
CAK CAK
CAJ CAJ
CAD CAD
SAC SAC
OAI OAI
OAA OAA
NAB NAB
HAQ HAQ
HAQA HAQA
HAS HAS
HASA HASA
HASB HASB
HAH HAH
HAHA HAHA
HAHB HAHB
HOAY HOAY
HAV HAV
HAVA HAVA
HAVB HAVB
HAZ HAZ
HAZA HAZA
HAZB HAZB
HAU HAU
HAUA HAUA
HAP HAP
HNAO HNAO
HNAM HNAM
HAE HAE
HAK HAK
HAJ HAJ
HNAB HNAB
HNAA HNAA