PDB Chemical Component 3BD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3BD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C12	O1	1.234	1.217
C12	C2	1.501	1.473
C12	N5	1.379	1.348
C13	C14	1.525	1.531
C13	N6	1.487	1.469
C8	C9	1.539	1.530
C8	C10	1.533	1.530
C8	C11	1.538	1.530
C8	C7	1.552	1.507
C14	N7	1.485	1.469
C15	N7	1.490	1.470
C15	C16	1.537	1.531
N3	C4	1.349	1.341
N3	C7	1.379	1.314
C1	C2	1.418	1.414
C1	N1	1.390	1.318
C1	N4	1.400	1.380
C2	C3	1.421	1.392
C3	C5	1.436	1.399
C4	N1	1.359	1.334
C4	C5	1.422	1.418
C7	N2	1.378	1.321
N2	C6	1.396	1.329
C5	C6	1.449	1.415
C6	N6	1.417	1.376
N6	C16	1.492	1.469
N7	C17	1.431	1.384
C17	N8	1.384	1.325
C17	N9	1.385	1.324
N8	C18	1.371	1.322
C18	C19	1.398	1.386
C19	C20	1.392	1.386
C20	N9	1.374	1.323
C13	H13	1.100	1.090
C13	H13A	1.100	1.090
C9	H9	1.100	1.090
C9	H9A	1.100	1.090
C9	H9B	1.100	1.091
C10	H10	1.100	1.090
C10	H10A	1.100	1.090
C10	H10B	1.100	1.091
C11	H11	1.100	1.091
C11	H11A	1.100	1.089
C11	H11B	1.100	1.090
C14	H14	1.100	1.090
C14	H14A	1.100	1.090
C15	H15	1.100	1.090
C15	H15A	1.100	1.090
C3	H3	1.080	1.080
N4	HN4	1.000	0.970
N4	HN4A	1.000	0.971
N5	HN5	1.000	0.970
N5	HN5A	0.999	0.970
C16	H16	1.101	1.090
C16	H16A	1.100	1.090
C18	H18	1.080	1.080
C19	H19	1.080	1.080
C20	H20	1.080	1.080

Bond Angles for 3BD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C12	C2	120.5	120.0
O1	C12	N5	124.2	120.0
C2	C12	N5	115.3	120.0
C12	C2	C1	122.7	120.4
C12	C2	C3	119.9	120.4
C12	N5	HN5	109.9	120.0
C12	N5	HN5A	125.1	120.0
C14	C13	N6	108.6	109.4
C13	C14	N7	109.1	109.4
C14	C13	H13	109.7	109.5
C14	C13	H13A	110.0	109.5
C13	C14	H14	109.6	109.5
C13	C14	H14A	109.7	109.4
C13	N6	C6	114.2	111.0
C13	N6	C16	110.5	110.9
N6	C13	H13	109.8	109.5
N6	C13	H13A	110.0	109.5
C9	C8	C10	107.7	109.5
C9	C8	C11	107.7	109.5
C9	C8	C7	112.5	109.5
C8	C9	H9	109.5	109.5
C8	C9	H9A	109.4	109.5
C8	C9	H9B	109.4	109.5
C10	C8	C11	108.9	109.4
C10	C8	C7	109.4	109.5
C8	C10	H10	109.5	109.5
C8	C10	H10A	109.5	109.5
C8	C10	H10B	109.5	109.4
C11	C8	C7	110.6	109.5
C8	C11	H11	109.5	109.4
C8	C11	H11A	109.5	109.4
C8	C11	H11B	109.5	109.5
C8	C7	N3	117.7	118.4
C8	C7	N2	120.0	118.5
C14	N7	C15	115.0	110.9
C14	N7	C17	112.6	111.0
N7	C14	H14	109.6	109.5
N7	C14	H14A	109.7	109.5
N7	C15	C16	109.5	109.4
C15	N7	C17	113.3	111.0
N7	C15	H15	109.5	109.5
N7	C15	H15A	109.5	109.5
C15	C16	N6	108.3	109.4
C16	C15	H15	109.5	109.5
C16	C15	H15A	109.4	109.5
C15	C16	H16	109.9	109.4
C15	C16	H16A	110.1	109.5
C4	N3	C7	120.2	120.6
N3	C4	N1	117.1	121.4
N3	C4	C5	121.6	118.3
N3	C7	N2	122.3	123.1
C2	C1	N1	120.1	121.4
C2	C1	N4	122.0	119.3
C1	C2	C3	117.3	119.3
N1	C1	N4	117.8	119.3
C1	N1	C4	122.4	121.5
C1	N4	HN4	109.5	120.0
C1	N4	HN4A	109.5	120.1
C2	C3	C5	122.4	118.0
C2	C3	H3	118.8	121.0
C3	C5	C4	116.4	119.6
C3	C5	C6	126.7	121.9
C5	C3	H3	118.8	121.0
N1	C4	C5	121.3	120.3
C4	C5	C6	116.9	118.5
C7	N2	C6	118.8	121.3
N2	C6	C5	120.2	118.2
N2	C6	N6	119.8	120.9
C5	C6	N6	120.0	120.9
C6	N6	C16	114.7	111.0
N6	C16	H16	109.9	109.5
N6	C16	H16A	110.1	109.5
N7	C17	N8	119.8	119.2
N7	C17	N9	119.8	119.2
N8	C17	N9	120.4	121.6
C17	N8	C18	118.5	120.7
C17	N9	C20	118.8	120.7
N8	C18	C19	124.0	119.2
N8	C18	H18	118.0	120.4
C18	C19	C20	114.6	118.6
C19	C18	H18	118.0	120.4
C18	C19	H19	122.7	120.7
C19	C20	N9	123.7	119.2
C20	C19	H19	122.7	120.7
C19	C20	H20	118.2	120.4
N9	C20	H20	118.1	120.4
H13	C13	H13A	108.8	109.4
H9	C9	H9A	109.5	109.5
H9	C9	H9B	109.5	109.4
H9A	C9	H9B	109.5	109.5
H10	C10	H10A	109.5	109.4
H10	C10	H10B	109.4	109.5
H10A	C10	H10B	109.5	109.4
H11	C11	H11A	109.4	109.5
H11	C11	H11B	109.5	109.5
H11A	C11	H11B	109.5	109.6
H14	C14	H14A	109.2	109.5
H15	C15	H15A	109.5	109.5
HN4	N4	HN4A	109.5	119.9
HN5	N5	HN5A	125.0	120.0
H16	C16	H16A	108.6	109.5

Torsion Angles for 3BD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C12	O1	N5	179.8	180.3
O1	C12	C2	C1	11.5	354.1
O1	C12	C2	C3	191.5	174.0
O1	C12	N5	HN5	359.9	0.1
O1	C12	N5	HN5A	179.9	180.0
O1	C12	C2	N5	180.2	179.7
C2	C12	N5	HN5	180.1	179.7
C2	C12	N5	HN5A	0.0	359.6
C12	C2	C1	N1	180.0	180.0
C12	C2	C1	N4	0.0	359.9
C1	C2	C12	C3	180.0	180.0
C12	C2	C3	C5	180.1	180.0
C12	C2	C3	H3	0.1	360.0
O1	C12	N5	C2	179.8	180.3
N5	C12	C2	C1	191.4	174.4
N5	C12	C2	C3	11.3	354.4
HN5	N5	C12	HN5A	180.0	180.1
C14	C13	N6	C6	164.7	176.8
C14	C13	N6	C16	295.8	300.7
N6	C13	C14	H13	240.0	240.0
N6	C13	C14	H13A	120.4	120.0
C13	C14	N7	C15	305.7	300.7
C13	C14	N7	C17	173.9	176.9
N7	C14	C13	H14	240.0	240.0
N7	C14	C13	H14A	120.2	119.9
H13	C13	C14	H13A	240.4	240.0
H14	C14	C13	H14A	240.1	240.0
N6	C13	C14	N7	57.4	58.4
C14	C13	N6	H13	120.0	120.0
C14	C13	N6	H13A	239.6	240.0
N6	C13	C14	H14	177.4	178.4
N6	C13	C14	H14A	297.2	298.4
C15	C16	N6	C13	63.0	59.3
N2	C6	N6	C13	24.4	64.9
C5	C6	N6	C13	205.1	245.0
C6	N6	C13	C16	228.9	236.1
C13	N6	C16	H16	303.0	299.4
C13	N6	C16	H16A	183.5	179.3
H13	C13	N6	H13A	119.6	120.0
C10	C8	C9	C11	117.3	240.0
C10	C8	C9	C7	239.4	120.0
C9	C8	C10	H10	281.4	60.0
C9	C8	C10	H10A	41.4	180.0
C9	C8	C10	H10B	161.4	300.0
C11	C8	C9	C7	122.1	240.0
C9	C8	C11	H11	353.4	60.0
C9	C8	C11	H11A	113.4	180.0
C9	C8	C11	H11B	233.4	300.1
C9	C8	C7	N3	177.5	360.0
C9	C8	C7	N2	357.4	180.0
H9	C9	C8	H9A	240.0	240.0
H9	C9	C8	H9B	120.0	119.9
H9A	C9	C8	H9B	240.0	239.9
C9	C8	C10	C11	243.5	120.0
C9	C8	C10	C7	122.5	240.0
C10	C8	C9	H9	293.5	60.0
C10	C8	C9	H9A	53.5	180.0
C10	C8	C9	H9B	173.5	300.1
C11	C8	C10	C7	239.0	120.0
C10	C8	C11	H11	236.9	180.0
C10	C8	C11	H11A	356.9	299.9
C10	C8	C11	H11B	116.9	60.0
C10	C8	C7	N3	297.2	240.0
C10	C8	C7	N2	117.1	60.0
H10	C10	C8	H10A	240.0	240.0
H10	C10	C8	H10B	120.0	120.0
H10A	C10	C8	H10B	240.0	240.0
C9	C8	C11	C10	116.5	240.0
C9	C8	C11	C7	236.7	120.0
C11	C8	C9	H9	176.3	179.9
C11	C8	C9	H9A	296.3	300.0
C11	C8	C9	H9B	56.2	60.0
C10	C8	C11	C7	120.2	240.0
C11	C8	C10	H10	37.9	300.0
C11	C8	C10	H10A	157.9	60.0
C11	C8	C10	H10B	277.9	180.0
C11	C8	C7	N3	57.1	120.0
C11	C8	C7	N2	237.0	300.1
H11	C11	C8	H11A	240.0	240.1
H11	C11	C8	H11B	120.0	120.0
H11A	C11	C8	H11B	240.0	239.9
C9	C8	C7	C10	240.4	120.0
C9	C8	C7	C11	120.5	240.0
C7	C8	C9	H9	54.1	300.0
C7	C8	C9	H9A	174.1	60.0
C7	C8	C9	H9B	294.1	180.1
C10	C8	C7	C11	240.1	120.0
C7	C8	C10	H10	158.9	180.0
C7	C8	C10	H10A	278.8	300.0
C7	C8	C10	H10B	38.9	60.0
C7	C8	C11	H11	116.7	300.0
C7	C8	C11	H11A	236.7	59.9
C7	C8	C11	H11B	356.7	180.0
C4	N3	C7	C8	180.6	180.0
N3	C7	C8	N2	180.1	179.9
C8	C7	N2	C6	179.7	180.0
N7	C14	C13	N6	57.4	58.4
N7	C14	C13	H13	177.4	178.4
N7	C14	C13	H13A	297.0	298.4
C13	C14	N7	H14	120.0	120.0
C13	C14	N7	H14A	239.8	240.1
C14	N7	C15	C16	53.6	59.3
C15	N7	C14	C17	131.8	123.9
C14	N7	C15	H15	173.6	179.3
C14	N7	C15	H15A	293.6	299.3
C14	N7	C17	N8	160.5	180.0
C14	N7	C17	N9	340.0	359.7
H14	C14	N7	H14A	119.8	120.1
C14	N7	C15	C17	228.5	236.1
C15	N7	C14	H14	185.7	180.7
C15	N7	C14	H14A	65.9	60.6
N7	C15	C16	N6	304.4	301.6
C16	C15	N7	H15	240.0	240.0
C16	C15	N7	H15A	120.0	119.9
N7	C15	C16	H16	64.4	61.6
N7	C15	C16	H16A	183.9	181.7
C15	N7	C17	N8	27.9	56.2
C15	N7	C17	N9	207.4	235.9
H15	C15	N7	H15A	240.0	239.9
C13	N6	C16	C15	63.0	59.3
C16	C15	N7	C17	185.1	183.1
N7	C15	C16	H15	120.0	120.0
N7	C15	C16	H15A	240.0	240.1
C6	N6	C16	C15	193.9	183.2
N6	C16	C15	H16	240.0	240.1
N6	C16	C15	H16A	120.5	120.0
H15	C15	C16	H15A	120.0	120.1
H16	C16	C15	H16A	240.5	239.9
C8	C7	N3	C4	180.6	180.0
C4	N3	C7	N2	0.6	359.9
C1	N1	C4	N3	180.5	180.1
C3	C5	C4	N3	179.5	179.9
N1	C4	N3	C5	179.7	179.9
N3	C4	C5	C6	359.7	359.9
C8	C7	N3	N2	179.9	180.1
C7	N3	C4	N1	179.4	180.0
C7	N3	C4	C5	359.7	0.1
N3	C7	N2	C6	359.6	0.0
C1	C2	C12	N5	191.4	174.4
C12	C2	C1	C3	180.0	180.0
N1	C1	C2	N4	180.0	180.1
C2	C1	N1	C4	359.8	360.0
C2	C1	N4	HN4	125.5	5.6
C2	C1	N4	HN4A	245.5	185.6
C1	C2	C3	C5	0.0	360.0
C1	C2	C3	H3	180.0	180.0
N3	C4	N1	C1	180.5	180.1
C2	C1	N1	N4	180.0	179.9
N1	C1	C2	C3	0.0	0.1
N1	C1	N4	HN4	305.5	185.5
N1	C1	N4	HN4A	65.5	5.5
C1	N1	C4	C5	0.2	360.0
C2	C1	N4	N1	180.0	180.1
N4	C1	C2	C3	180.1	179.9
N4	C1	N1	C4	179.8	180.1
HN4	N4	C1	HN4A	240.0	180.0
C3	C2	C12	N5	11.3	354.4
C12	C2	C3	C1	180.0	180.0
C3	C2	C1	N1	0.0	0.1
C3	C2	C1	N4	180.1	179.9
C2	C3	C5	C4	360.0	360.0
C2	C3	C5	C6	179.8	180.0
C5	C3	C2	H3	180.0	180.0
N3	C4	C5	C3	179.5	179.9
C2	C3	C5	H3	180.0	180.0
N1	C4	C5	C3	359.9	0.0
C4	C5	C3	C6	180.2	180.0
N2	C6	C5	C3	180.7	180.0
C3	C5	C6	N6	359.9	359.9
N1	C4	N3	C7	179.4	180.0
N3	C4	N1	C5	180.3	180.1
C4	N1	C1	N4	179.8	180.1
C3	C5	C4	N1	359.9	0.0
N1	C4	C5	C6	180.0	180.0
C5	C4	N3	C7	359.7	0.1
N3	C4	C5	N1	179.7	179.9
C3	C5	C4	C6	179.8	180.0
C4	C5	C3	H3	180.0	180.0
N2	C6	C5	C4	0.5	0.1
C4	C5	C6	N6	179.8	180.0
C8	C7	N2	N3	180.1	179.9
C7	N2	C6	C5	359.8	360.0
C7	N2	C6	N6	180.6	180.1
C13	N6	C6	N2	24.4	64.9
C3	C5	C6	N2	180.7	180.0
C4	C5	C6	N2	0.5	0.1
C5	C6	N2	N6	179.2	179.9
N2	C6	N6	C16	255.4	301.1
C13	N6	C6	C5	205.1	245.0
C3	C5	C6	C4	180.2	180.0
C6	C5	C3	H3	359.8	0.0
N2	C6	C5	N6	180.8	180.1
C5	C6	N6	C16	76.1	121.2
C13	N6	C6	C16	129.0	123.8
C6	N6	C13	H13	44.7	56.8
C6	N6	C13	H13A	285.1	296.8
C15	C16	N6	C6	193.9	183.2
N2	C6	N6	C5	179.2	179.9
C6	N6	C16	H16	73.9	63.3
C6	N6	C16	H16A	314.3	303.2
C13	N6	C16	C6	229.2	236.1
C16	N6	C13	H13	175.8	180.7
C16	N6	C13	H13A	56.2	60.7
N6	C16	C15	H15	184.4	181.6
N6	C16	C15	H15A	64.4	61.6
C15	C16	N6	H16	120.0	119.9
C15	C16	N6	H16A	239.5	240.0
H16	C16	N6	H16A	119.5	120.1
C14	N7	C17	C15	132.7	123.8
C17	N7	C14	H14	53.9	56.8
C17	N7	C14	H14A	294.0	296.8
C17	N7	C15	C16	185.1	183.1
C17	N7	C15	H15	305.1	303.2
C17	N7	C15	H15A	65.1	63.2
N8	C17	N7	N9	180.5	180.3
N7	C17	N8	C18	179.5	180.0
N7	C17	N9	C20	180.5	179.7
N7	C17	N8	N9	179.5	179.7
N8	C17	N9	C20	360.0	359.4
C17	N8	C18	C19	360.0	360.0
C17	N8	C18	H18	180.0	180.0
N7	C17	N9	N8	180.5	180.3
N9	C17	N8	C18	360.0	0.3
C19	C20	N9	C17	0.1	0.5
C17	N9	C20	H20	180.1	180.3
C18	N8	C17	N9	360.0	0.3
N8	C18	C19	C20	0.1	360.0
C19	C18	N8	H18	180.0	180.0
N8	C18	C19	H19	180.1	180.0
N8	C18	C19	H18	180.0	180.0
C18	C19	C20	N9	359.9	359.8
C20	C19	C18	H19	180.0	179.9
C18	C19	C20	H20	179.9	180.0
C17	N9	C20	C19	0.1	0.5
C20	C19	C18	H18	180.1	180.0
C18	C19	C20	H19	180.0	180.1
N9	C20	C19	H20	180.0	179.8
N9	C20	C19	H19	179.9	179.7
C19	C20	N9	H20	180.0	180.2
C14	C13	H13	N6	240.7	240.0
H13	C13	C14	N7	177.4	178.4
C14	C13	H13	H13A	120.3	120.0
H13	C13	C14	H14	297.4	298.4
H13	C13	C14	H14A	57.3	58.5
H13	C13	N6	C6	44.7	56.8
H13	C13	N6	C16	175.8	180.7
N6	C13	H13	H13A	239.6	239.9
C14	C13	H13A	N6	119.5	119.9
H13A	C13	C14	N7	297.0	298.4
C14	C13	H13A	H13	239.8	240.0
H13A	C13	C14	H14	57.0	58.4
H13A	C13	C14	H14A	176.9	178.4
H13A	C13	N6	C6	285.1	296.8
H13A	C13	N6	C16	56.2	60.7
N6	C13	H13A	H13	120.3	120.1
H9	C9	C8	C10	293.5	60.0
H9	C9	C8	C11	176.3	179.9
H9	C9	C8	C7	54.1	300.0
C8	C9	H9	H9A	120.0	120.0
C8	C9	H9	H9B	240.0	240.0
H9A	C9	H9	H9B	120.0	120.0
H9A	C9	C8	C10	53.5	180.0
H9A	C9	C8	C11	296.3	300.0
H9A	C9	C8	C7	174.1	60.0
C8	C9	H9A	H9	240.0	240.0
C8	C9	H9A	H9B	120.0	120.1
H9	C9	H9A	H9B	240.0	240.1
H9B	C9	C8	C10	173.5	300.1
H9B	C9	C8	C11	56.2	60.0
H9B	C9	C8	C7	294.1	180.1
C8	C9	H9B	H9	120.0	120.0
C8	C9	H9B	H9A	240.0	239.9
H9	C9	H9B	H9A	120.0	120.0
H10	C10	C8	C11	37.9	300.0
H10	C10	C8	C7	158.9	180.0
C8	C10	H10	H10A	120.0	120.0
C8	C10	H10	H10B	240.0	240.0
H10A	C10	H10	H10B	120.0	120.0
H10A	C10	C8	C11	157.9	60.0
H10A	C10	C8	C7	278.8	300.0
C8	C10	H10A	H10	240.0	240.0
C8	C10	H10A	H10B	120.0	120.0
H10	C10	H10A	H10B	240.0	240.0
H10B	C10	C8	C11	277.9	180.0
H10B	C10	C8	C7	38.9	60.0
C8	C10	H10B	H10	120.0	120.0
C8	C10	H10B	H10A	240.0	240.0
H10	C10	H10B	H10A	120.0	120.0
H11	C11	C8	C7	116.7	300.0
C8	C11	H11	H11A	120.0	119.9
C8	C11	H11	H11B	240.0	240.0
H11A	C11	H11	H11B	120.0	120.1
H11A	C11	C8	C7	236.7	59.9
C8	C11	H11A	H11	240.0	240.1
C8	C11	H11A	H11B	120.0	120.0
H11	C11	H11A	H11B	240.0	239.9
H11B	C11	C8	C7	356.7	180.0
C8	C11	H11B	H11	120.0	119.9
C8	C11	H11B	H11A	240.0	240.0
H11	C11	H11B	H11A	120.0	120.1
H14	C14	C13	N6	177.4	178.4
C13	C14	H14	N7	240.3	240.1
H14	C14	C13	H13	297.4	298.4
H14	C14	C13	H13A	57.0	58.4
C13	C14	H14	H14A	120.2	120.0
H14	C14	N7	C15	185.7	180.7
H14	C14	N7	C17	53.9	56.8
N7	C14	H14	H14A	239.9	239.9
H14A	C14	C13	N6	297.2	298.4
C13	C14	H14A	N7	119.8	119.9
H14A	C14	C13	H13	57.3	58.5
H14A	C14	C13	H13A	176.9	178.4
C13	C14	H14A	H14	239.9	239.9
H14A	C14	N7	C15	65.9	60.6
H14A	C14	N7	C17	294.0	296.8
N7	C14	H14A	H14	120.1	120.1
N7	C15	H15	C16	240.0	240.1
H15	C15	N7	C17	305.1	303.2
N7	C15	H15	H15A	120.0	120.0
H15	C15	C16	N6	184.4	181.6
C16	C15	H15	H15A	240.0	239.9
H15	C15	C16	H16	304.4	301.6
H15	C15	C16	H16A	63.9	61.7
N7	C15	H15A	C16	120.0	119.9
H15A	C15	N7	C17	65.1	63.2
N7	C15	H15A	H15	240.0	239.9
H15A	C15	C16	N6	64.4	61.6
C16	C15	H15A	H15	120.0	120.1
H15A	C15	C16	H16	184.4	181.5
H15A	C15	C16	H16A	303.9	301.6
C2	C3	H3	C5	180.0	180.0
H3	C3	C5	C4	180.0	180.0
H3	C3	C5	C6	359.8	0.0
C1	N4	HN4	HN4A	120.0	180.0
C1	N4	HN4A	HN4	240.0	180.0
C12	N5	HN5	HN5A	180.0	179.9
C12	N5	HN5A	HN5	180.0	180.1
C15	C16	H16	N6	241.0	240.1
H16	C16	C15	H15	304.4	301.6
H16	C16	C15	H15A	184.4	181.5
C15	C16	H16	H16A	120.5	120.0
N6	C16	H16	H16A	239.5	239.9
C15	C16	H16A	N6	119.4	119.9
H16A	C16	C15	H15	63.9	61.7
H16A	C16	C15	H15A	303.9	301.6
C15	C16	H16A	H16	239.7	240.0
N6	C16	H16A	H16	120.3	120.1
N8	C18	H18	C19	180.0	180.0
H18	C18	C19	C20	180.1	180.0
H18	C18	C19	H19	0.1	0.1
C18	C19	H19	C20	180.0	179.9
H19	C19	C18	H18	0.1	0.1
H19	C19	C20	N9	179.9	179.7
H19	C19	C20	H20	359.9	359.9
C19	C20	H20	N9	180.0	179.8
H20	C20	C19	H19	359.9	359.9