PDB Chemical Component 3B9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3B9

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C15	C14	1.420	1.376
C15	C16	1.427	1.390
C1	N1	1.364	1.330
C1	N2	1.371	1.320
C1	N4	1.378	1.381
C2	C4	1.423	1.416
C2	N1	1.375	1.326
C2	N5	1.389	1.377
C3	C4	1.430	1.417
C3	N2	1.358	1.340
C3	N3	1.357	1.334
C8	C7	1.543	1.507
C8	C9	1.552	1.530
C8	C10	1.555	1.530
C8	C11	1.561	1.530
C4	C5	1.430	1.400
C5	C6	1.406	1.370
C6	C7	1.418	1.390
C7	N3	1.389	1.314
C9	N6	1.461	1.464
N6	C12	1.372	1.348
C12	O1	1.241	1.216
C12	C13	1.477	1.476
C13	C14	1.427	1.398
C13	C18	1.420	1.397
C16	C17	1.437	1.391
C16	O2	1.411	1.357
C17	C18	1.412	1.377
O2	C19	1.402	1.358
C19	C20	1.438	1.387
C19	C24	1.427	1.388
C20	C21	1.418	1.381
C21	C22	1.421	1.383
C22	C23	1.422	1.384
C23	C24	1.423	1.381
C15	H15	1.080	1.080
C5	H5	1.080	1.080
C6	H6	1.080	1.080
C9	H9	1.100	1.090
C9	H9A	1.100	1.090
N4	HN4	1.000	0.969
N4	HN4A	1.000	0.970
N5	HN5	1.000	0.970
N5	HN5A	1.000	0.970
C10	H10	1.100	1.090
C10	H10A	1.100	1.090
C10	H10B	1.100	1.090
C11	H11	1.100	1.090
C11	H11A	1.100	1.090
C11	H11B	1.100	1.090
N6	HN6	1.000	0.970
C14	H14	1.080	1.080
C17	H17	1.080	1.080
C18	H18	1.080	1.080
C20	H20	1.080	1.080
C21	H21	1.080	1.081
C22	H22	1.080	1.079
C23	H23	1.080	1.080
C24	H24	1.080	1.079

Bond Angles for 3B9

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C14	C15	C16	120.1	120.1
C15	C14	C13	119.7	119.9
C14	C15	H15	120.0	119.9
C15	C14	H14	120.2	120.1
C15	C16	C17	119.6	120.2
C15	C16	O2	118.6	119.9
C16	C15	H15	119.9	119.9
N1	C1	N2	122.4	122.9
N1	C1	N4	118.8	118.6
C1	N1	C2	119.3	121.3
N2	C1	N4	118.8	118.6
C1	N2	C3	119.6	120.6
C1	N4	HN4	109.5	120.0
C1	N4	HN4A	109.5	120.0
C4	C2	N1	121.1	118.2
C4	C2	N5	121.2	120.9
C2	C4	C3	116.5	118.6
C2	C4	C5	126.0	122.1
N1	C2	N5	117.7	120.9
C2	N5	HN5	109.5	120.0
C2	N5	HN5A	109.4	119.9
C4	C3	N2	121.2	118.5
C4	C3	N3	120.9	119.8
C3	C4	C5	117.5	119.3
N2	C3	N3	117.8	121.7
C3	N3	C7	121.5	121.2
C7	C8	C9	107.2	109.5
C7	C8	C10	110.8	109.5
C7	C8	C11	113.4	109.5
C8	C7	C6	120.8	119.1
C8	C7	N3	118.6	119.1
C9	C8	C10	109.6	109.5
C9	C8	C11	109.6	109.5
C8	C9	N6	116.4	109.5
C8	C9	H9	107.2	109.5
C8	C9	H9A	105.6	109.4
C10	C8	C11	106.2	109.5
C8	C10	H10	109.5	109.5
C8	C10	H10A	109.5	109.5
C8	C10	H10B	109.5	109.5
C8	C11	H11	109.5	109.5
C8	C11	H11A	109.5	109.5
C8	C11	H11B	109.5	109.5
C4	C5	C6	121.2	118.1
C4	C5	H5	119.4	120.9
C5	C6	C7	118.2	119.9
C6	C5	H5	119.4	121.0
C5	C6	H6	120.9	120.1
C6	C7	N3	120.6	121.8
C7	C6	H6	120.9	120.1
C9	N6	C12	124.1	120.0
N6	C9	H9	107.2	109.5
N6	C9	H9A	105.6	109.5
C9	N6	HN6	117.9	120.0
N6	C12	O1	123.0	120.0
N6	C12	C13	118.4	120.0
C12	N6	HN6	117.9	120.0
O1	C12	C13	118.5	120.0
C12	C13	C14	119.6	120.1
C12	C13	C18	119.7	120.1
C14	C13	C18	120.7	119.8
C13	C14	H14	120.1	120.0
C13	C18	C17	119.7	119.9
C13	C18	H18	120.2	120.0
C17	C16	O2	121.8	119.9
C16	C17	C18	120.3	120.1
C16	C17	H17	119.9	119.9
C16	O2	C19	121.9	118.1
C18	C17	H17	119.8	120.0
C17	C18	H18	120.1	120.1
O2	C19	C20	123.4	120.1
O2	C19	C24	116.7	120.0
C20	C19	C24	119.9	119.9
C19	C20	C21	119.7	120.0
C19	C20	H20	120.2	120.0
C19	C24	C23	119.9	119.9
C19	C24	H24	120.1	120.0
C20	C21	C22	120.3	120.1
C21	C20	H20	120.1	120.0
C20	C21	H21	119.9	120.0
C21	C22	C23	120.2	120.1
C22	C21	H21	119.8	120.0
C21	C22	H22	119.9	120.0
C22	C23	C24	120.1	120.1
C23	C22	H22	119.9	120.0
C22	C23	H23	119.9	119.9
C24	C23	H23	120.0	120.0
C23	C24	H24	120.1	120.1
H9	C9	H9A	115.1	109.5
HN4	N4	HN4A	109.5	120.0
HN5	N5	HN5A	109.5	120.1
H10	C10	H10A	109.5	109.5
H10	C10	H10B	109.5	109.4
H10A	C10	H10B	109.4	109.4
H11	C11	H11A	109.4	109.4
H11	C11	H11B	109.4	109.5
H11A	C11	H11B	109.5	109.4

Torsion Angles for 3B9

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C14	C15	C16	C17	0.2	360.0
C14	C15	C16	O2	180.3	180.0
C16	C15	C14	H15	180.0	180.3
C12	C13	C14	C15	179.8	180.0
C15	C14	C13	C18	359.7	359.9
C13	C14	C15	H14	180.0	180.1
C16	C15	C14	C13	0.1	0.1
C14	C15	C16	H15	180.0	179.7
C16	C15	C14	H14	180.1	180.0
C17	C16	C15	O2	179.8	179.9
C15	C16	C17	C18	359.7	0.0
C15	C16	C17	H17	179.7	180.0
C15	C16	O2	C19	179.0	67.4
N2	C1	N1	N4	180.1	180.2
N1	C1	N2	C3	360.0	0.1
N1	C1	N4	HN4	122.7	359.9
N1	C1	N4	HN4A	242.7	180.0
C4	C2	N1	C1	359.9	0.0
C1	N1	C2	N5	180.0	180.0
N1	C1	N2	N4	179.9	179.8
N2	C1	N1	C2	360.0	360.0
N2	C1	N4	HN4	302.6	179.7
N2	C1	N4	HN4A	62.6	359.8
C4	C3	N2	C1	0.1	359.9
C1	N2	C3	N3	179.9	180.0
N1	C1	N4	N2	180.1	180.2
N4	C1	N1	C2	179.9	179.7
N4	C1	N2	C3	180.1	180.3
HN4	N4	C1	HN4A	240.0	179.9
C1	N1	C2	C4	359.9	0.0
N1	C2	C4	N5	180.1	180.0
C4	C2	N5	HN5	272.6	360.0
C4	C2	N5	HN5A	32.6	180.0
C2	C4	C3	N2	359.9	0.1
C2	C4	C3	N3	180.1	180.0
C3	C4	C2	C5	180.1	180.0
C2	C4	C5	C6	179.9	180.0
C2	C4	C5	H5	359.9	0.0
C2	N1	C1	N2	360.0	360.0
C2	N1	C1	N4	179.9	179.7
C4	C2	N1	N5	179.9	180.0
N1	C2	C4	C3	0.1	360.0
N1	C2	C4	C5	180.1	180.0
N1	C2	N5	HN5	92.5	180.0
N1	C2	N5	HN5A	212.6	0.0
C4	C2	N5	N1	180.1	180.0
N5	C2	C4	C3	180.1	179.9
N5	C2	C4	C5	0.0	359.9
HN5	N5	C2	HN5A	240.0	180.0
C1	N2	C3	C4	0.1	359.9
C3	C4	C2	N1	0.1	360.0
C3	C4	C2	N5	180.1	179.9
C2	C4	C3	C5	179.9	180.0
N2	C3	C4	N3	179.8	180.1
C4	C3	N3	C7	359.8	0.0
C3	C4	C5	C6	359.9	0.0
C3	C4	C5	H5	179.9	180.0
C3	N2	C1	N4	180.1	180.3
C4	C3	N2	N3	180.2	179.9
N2	C3	C4	C5	179.9	180.0
N2	C3	N3	C7	180.0	179.9
C4	C3	N3	N2	179.8	180.1
N3	C3	C4	C5	0.1	360.0
C8	C7	N3	C3	179.2	180.0
C6	C7	N3	C3	0.3	0.0
C3	N3	C7	C8	179.2	180.0
C9	C8	C7	C10	240.4	240.0
C9	C8	C7	C11	121.1	120.0
C7	C8	C9	N6	179.4	180.0
C7	C8	C9	H9	299.4	300.0
C7	C8	C9	H9A	62.6	60.0
C10	C8	C7	C11	240.7	240.0
C7	C8	C10	H10	124.6	60.0
C7	C8	C10	H10A	244.6	180.1
C7	C8	C10	H10B	4.6	300.0
C7	C8	C11	H11	68.0	60.0
C7	C8	C11	H11A	188.0	180.0
C7	C8	C11	H11B	308.0	300.0
C5	C6	C7	C8	180.8	180.0
C6	C7	C8	N3	179.0	180.0
C8	C7	C6	H6	0.8	0.1
C7	C8	C9	C10	120.4	120.0
C7	C8	C9	C11	236.5	240.0
C9	C8	C7	C6	94.7	165.0
C9	C8	C7	N3	275.8	345.0
C10	C8	C9	C11	116.1	120.0
C9	C8	C10	H10	242.8	180.0
C9	C8	C10	H10A	2.8	300.1
C9	C8	C10	H10B	122.8	60.0
C9	C8	C11	H11	308.3	300.0
C9	C8	C11	H11A	68.2	60.0
C9	C8	C11	H11B	188.3	180.0
C8	C9	N6	C12	105.2	180.0
N6	C9	C8	H9	240.0	239.9
N6	C9	C8	H9A	116.8	120.0
C8	C9	N6	HN6	285.2	360.0
H9	C9	C8	H9A	236.8	240.0
C7	C8	C10	C9	241.8	240.0
C7	C8	C10	C11	123.6	120.0
C10	C8	C7	C6	214.4	285.0
C10	C8	C7	N3	35.4	105.0
C9	C8	C10	C11	241.7	240.0
C10	C8	C9	N6	59.0	60.0
C10	C8	C9	H9	179.1	180.0
C10	C8	C9	H9A	302.3	300.0
C10	C8	C11	H11	190.0	180.0
C10	C8	C11	H11A	309.9	300.0
C10	C8	C11	H11B	70.0	60.0
H10	C10	C8	H10A	240.0	239.9
H10	C10	C8	H10B	120.0	120.0
H10A	C10	C8	H10B	240.0	240.0
C7	C8	C11	C9	119.7	120.0
C7	C8	C11	C10	238.1	240.0
C11	C8	C7	C6	333.7	45.0
C11	C8	C7	N3	154.7	225.0
C9	C8	C11	C10	118.3	120.0
C11	C8	C9	N6	302.9	300.0
C11	C8	C9	H9	62.9	60.1
C11	C8	C9	H9A	186.1	180.0
C11	C8	C10	H10	1.1	300.0
C11	C8	C10	H10A	121.1	60.0
C11	C8	C10	H10B	241.0	180.0
H11	C11	C8	H11A	240.0	240.0
H11	C11	C8	H11B	120.0	120.0
H11A	C11	C8	H11B	240.0	240.0
C5	C4	C2	N1	180.1	180.0
C5	C4	C2	N5	0.0	359.9
C2	C4	C5	C3	180.1	180.0
C5	C4	C3	N2	179.9	180.0
C5	C4	C3	N3	0.1	360.0
C4	C5	C6	C7	0.2	0.0
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	H6	180.2	180.0
C8	C7	C6	C5	180.8	180.0
C4	C5	C6	H5	180.0	180.0
C5	C6	C7	N3	359.7	360.0
C7	C6	C5	H6	180.0	180.1
C3	N3	C7	C6	0.3	0.0
C6	C7	C8	C9	94.7	165.0
C6	C7	C8	C10	214.4	285.0
C6	C7	C8	C11	333.7	45.0
C8	C7	C6	N3	181.1	180.0
C7	C6	C5	H5	180.2	180.0
C5	C6	C7	H6	180.0	179.9
N3	C7	C8	C9	275.8	345.0
N3	C7	C8	C10	35.4	105.0
N3	C7	C8	C11	154.7	225.0
C8	C7	N3	C6	179.0	180.0
N3	C7	C6	H6	179.7	180.0
N6	C9	C8	C10	59.0	60.0
N6	C9	C8	C11	302.9	300.0
C8	C9	N6	H9	120.0	120.0
C8	C9	N6	H9A	243.2	240.0
C9	N6	C12	O1	359.2	360.0
C9	N6	C12	C13	179.0	180.0
C12	N6	C9	HN6	180.0	180.0
H9	C9	N6	H9A	123.2	120.0
C12	N6	C9	H9	345.2	60.0
C12	N6	C9	H9A	222.0	300.0
C9	N6	C12	HN6	180.0	180.0
O1	C12	N6	C13	180.2	180.0
N6	C12	C13	C14	0.6	180.0
N6	C12	C13	C18	180.7	0.0
N6	C12	O1	C13	179.8	180.0
O1	C12	N6	HN6	179.2	180.0
O1	C12	C13	C14	180.4	360.0
O1	C12	C13	C18	0.5	180.0
C15	C14	C13	C12	179.8	180.0
N6	C12	C13	O1	180.2	180.0
C13	C12	N6	HN6	359.0	0.0
C14	C13	C12	C18	179.9	179.9
C12	C13	C14	H14	359.8	0.1
C12	C13	C18	C17	180.1	180.0
C12	C13	C18	H18	0.1	360.0
C13	C14	C15	C16	0.1	0.1
C13	C14	C15	H15	180.1	179.7
C15	C14	C13	H14	180.0	179.9
C12	C13	C14	C18	180.1	180.1
C14	C13	C18	C17	0.2	0.1
C14	C13	C18	H18	180.2	180.0
C12	C13	C18	C14	179.9	179.9
C18	C13	C14	H14	179.7	180.0
C16	C17	C18	C13	0.1	359.9
C13	C18	C17	H17	180.1	180.0
C17	C18	C13	H18	180.0	180.1
C15	C16	C17	O2	180.2	180.1
C17	C16	C15	H15	180.2	180.3
C13	C18	C17	C16	0.1	359.9
C17	C16	O2	C19	359.2	247.4
C18	C17	C16	H17	180.0	180.1
C16	C17	C18	H18	180.0	180.0
C15	C16	O2	C17	179.8	179.9
O2	C16	C15	H15	0.3	0.4
O2	C16	C17	C18	179.6	180.0
O2	C16	C17	H17	359.5	359.9
C16	O2	C19	C20	282.9	186.1
C16	O2	C19	C24	103.3	5.9
C13	C18	C17	H18	180.0	179.9
C18	C17	C16	O2	179.6	180.0
C16	C17	C18	H17	180.0	179.9
C20	C19	O2	C24	179.6	180.2
O2	C19	C20	C21	180.1	180.0
O2	C19	C20	H20	0.1	360.0
O2	C19	C24	C23	179.8	179.7
O2	C19	C24	H24	359.8	359.9
O2	C19	C20	C24	180.4	179.8
C20	C19	C24	C23	0.2	359.4
C20	C19	C24	H24	180.2	179.7
C19	C20	C21	C22	0.2	0.0
C21	C20	C19	H20	180.0	180.1
C19	C20	C21	H21	180.1	180.0
O2	C19	C24	C20	179.6	180.2
C24	C19	C20	C21	359.7	0.2
C24	C19	C20	H20	179.7	180.2
C22	C23	C24	C19	0.0	0.6
C19	C24	C23	H23	180.0	180.3
C23	C24	C19	H24	180.0	179.8
C21	C20	C19	C24	359.7	0.2
C19	C20	C21	H20	180.0	179.9
C20	C21	C22	C23	0.0	360.0
C22	C21	C20	H21	180.0	180.1
C20	C21	C22	H22	180.0	179.9
C22	C21	C20	H20	180.2	180.1
C20	C21	C22	H21	180.0	179.9
C21	C22	C23	C24	359.9	359.7
C23	C22	C21	H22	180.0	180.0
C21	C22	C23	H23	179.9	180.0
C19	C24	C23	C22	0.0	0.6
C23	C22	C21	H21	180.0	180.1
C21	C22	C23	H22	180.0	180.0
C24	C23	C22	H23	180.0	179.8
C22	C23	C24	H24	180.0	180.3
C19	C24	C23	H24	180.0	180.2
C24	C23	C22	H22	179.9	179.8
C22	C23	C24	H23	180.0	180.2
C14	C15	H15	C16	180.0	180.3
H15	C15	C14	C13	180.1	179.7
H15	C15	C14	H14	0.1	359.6
H15	C15	C16	C17	180.2	180.3
H15	C15	C16	O2	0.3	0.4
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	C7	180.2	180.0
H5	C5	C6	H6	0.2	359.9
C5	C6	H6	C7	180.0	180.1
H6	C6	C5	H5	0.2	359.9
H6	C6	C7	N3	179.7	180.0
H9	C9	C8	C10	179.1	180.0
H9	C9	C8	C11	62.9	60.1
C8	C9	H9	N6	234.3	239.9
C8	C9	H9	H9A	117.1	119.9
H9	C9	N6	C12	345.2	60.0
N6	C9	H9	H9A	242.9	240.0
H9	C9	N6	HN6	165.2	239.9
H9A	C9	C8	C10	302.3	300.0
H9A	C9	C8	C11	186.1	180.0
C8	C9	H9A	N6	123.9	120.0
C8	C9	H9A	H9	242.0	240.0
H9A	C9	N6	C12	222.0	300.0
N6	C9	H9A	H9	118.1	120.0
H9A	C9	N6	HN6	42.0	119.9
C1	N4	HN4	HN4A	120.0	180.1
C1	N4	HN4A	HN4	240.0	179.9
C2	N5	HN5	HN5A	120.0	180.0
C2	N5	HN5A	HN5	240.0	180.0
H10	C10	C8	C11	1.1	300.0
C8	C10	H10	H10A	120.0	120.0
C8	C10	H10	H10B	240.0	240.0
H10A	C10	H10	H10B	120.0	120.0
H10A	C10	C8	C11	121.1	60.0
C8	C10	H10A	H10	240.0	240.0
C8	C10	H10A	H10B	120.0	120.0
H10	C10	H10A	H10B	240.0	240.0
H10B	C10	C8	C11	241.0	180.0
C8	C10	H10B	H10	120.0	120.0
C8	C10	H10B	H10A	240.0	240.0
H10	C10	H10B	H10A	120.0	120.0
C8	C11	H11	H11A	120.0	120.0
C8	C11	H11	H11B	240.0	240.0
H11A	C11	H11	H11B	120.0	120.0
C8	C11	H11A	H11	240.0	240.0
C8	C11	H11A	H11B	120.0	120.0
H11	C11	H11A	H11B	240.0	240.0
C8	C11	H11B	H11	120.0	120.0
C8	C11	H11B	H11A	240.0	240.0
H11	C11	H11B	H11A	119.9	120.0
C9	N6	HN6	C12	180.0	180.0
HN6	N6	C9	H9	165.2	239.9
HN6	N6	C9	H9A	42.0	119.9
HN6	N6	C12	O1	179.2	180.0
HN6	N6	C12	C13	359.0	0.0
H14	C14	C15	C16	180.1	180.0
C15	C14	H14	C13	180.0	180.1
H14	C14	C15	H15	0.1	359.6
H14	C14	C13	C18	179.7	180.0
H17	C17	C16	O2	359.5	359.9
C16	C17	H17	C18	180.0	180.1
H17	C17	C18	H18	0.1	0.1
C13	C18	H18	C17	180.0	180.1
H18	C18	C17	H17	0.1	0.1
H20	C20	C19	C24	179.7	180.2
C19	C20	H20	C21	180.0	180.1
H20	C20	C21	C22	180.2	180.1
H20	C20	C21	H21	0.1	0.0
C20	C21	H21	C22	180.0	180.1
H21	C21	C20	H20	0.1	0.0
H21	C21	C22	C23	180.0	180.1
H21	C21	C22	H22	0.1	0.0
C21	C22	H22	C23	180.0	180.0
H22	C22	C21	H21	0.1	0.0
H22	C22	C23	C24	179.9	179.8
H22	C22	C23	H23	359.9	360.0
C22	C23	H23	C24	180.0	179.8
H23	C23	C22	H22	359.9	360.0
H23	C23	C24	H24	360.0	0.1
C19	C24	H24	C23	180.0	179.8
H24	C24	C23	H23	360.0	0.1