PDB Chemical Component 3AU

Ideal Model

Chemical Description

Name 3-[(3S)-3-amino-3-carboxypropyl]uridine 5'-(dihydrogen phosphate)
Formula C13 H20 N3 O11 P
Formal charge 0
Molecular weight 425.285 g/mol
Component type RNA linking
Nonstandard Parent Id U

Chemical features

Atom count 48
Chiral atom count 5
Chiral atoms C1' C12 C2' C3' C4'
Bond count 49
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3-[(3S)-3-amino-3-carboxypropyl]uridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) (2S)-2-azanyl-4-[3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2,6-dioxo-pyrimidin-1-yl]butanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) N[C@@H](CCN1C(=O)C=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C1=O)C(O)=O
SMILES (CACTVS) N[CH](CCN1C(=O)C=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C1=O)C(O)=O
Stereo SMILES (OpenEye) C1=CN(C(=O)N(C1=O)CC[C@@H](C(=O)O)N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C13H20N3O11P/c14-6(12(20)21)1-3-15-8(17)2-4-16(13(15)22)11-10(19)9(18)7(27-11)5-26-28(23,24)25/h2,4,6-7,9-11,18-19H,1,3,5,14H2,(H,20,21)(H2,23,24,25)/t6-,7+,9+,10+,11+/m0/s1
InChIKey descriptor CJKRCYMKRHIIKR-CNYIRLTGSA-N

Status Information

Last modified 2021-05-11
Created 2011-01-18
Release status REL
Model PDB code 3IZV
Processing site RCSB