PDB Chemical Component 3AU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3AU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O5' 1.522 1.610
P OP1 1.477 1.480
P OP2 1.512 1.609
N1 C2 1.381 1.346
N1 C6 1.370 1.369
N1 C1' 1.461 1.465
C2 O2 1.257 1.216
C2 N3 1.382 1.346
N3 C4 1.374 1.348
N3 C10 1.459 1.465
C4 O4 1.256 1.217
C4 C5 1.402 1.416
C5 C6 1.399 1.350
C5 H5 1.080 1.080
C6 H6 1.080 1.079
C1' C2' 1.542 1.550
C1' O4' 1.439 1.443
C1' H1' 1.100 1.090
C10 C11 1.554 1.530
C10 H10 1.100 1.090
C10 H10A 1.100 1.091
C11 C12 1.556 1.530
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
C12 C13 1.458 1.508
C12 N40 1.473 1.469
C12 H12 1.100 1.089
C13 O30 1.222 1.208
C13 O31 1.226 1.342
C2' O2' 1.425 1.429
C2' C3' 1.539 1.548
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C3' O3' 1.428 1.429
C3' C4' 1.553 1.541
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.968
C4' O4' 1.438 1.437
C4' C5' 1.548 1.530
C4' H4' 1.100 1.090
N40 HN40 0.999 1.009
N40 HN4A 0.999 1.009
C5' O5' 1.340 1.429
C5' H5' 1.099 1.090
C5' H5'A 1.100 1.090
P O11 1.511 1.611
O31 H18 0.950 0.967
OP2 H19 0.950 0.967
O11 H20 0.950 0.967

Bond Angles for 3AU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O5' P OP1 110.1 109.5
O5' P OP2 109.2 109.5
P O5' C5' 125.8 123.0
O5' P O11 109.0 109.4
OP1 P OP2 109.7 109.5
OP1 P O11 109.7 109.4
OP2 P O11 109.1 109.5
P OP2 H19 109.5 114.0
C2 N1 C6 118.6 120.6
C2 N1 C1' 121.8 119.7
N1 C2 O2 118.9 119.5
N1 C2 N3 122.0 121.0
C6 N1 C1' 119.6 119.7
N1 C6 C5 121.3 119.7
N1 C6 H6 119.3 120.1
N1 C1' C2' 111.7 110.6
N1 C1' O4' 114.8 110.6
N1 C1' H1' 102.5 110.5
O2 C2 N3 119.1 119.5
C2 N3 C4 118.9 120.3
C2 N3 C10 121.1 119.9
C4 N3 C10 120.0 119.9
N3 C4 O4 122.7 120.3
N3 C4 C5 120.7 119.4
N3 C10 C11 110.8 109.5
N3 C10 H10 109.0 109.5
N3 C10 H10A 109.1 109.5
O4 C4 C5 116.7 120.3
C4 C5 C6 118.4 119.1
C4 C5 H5 120.8 120.5
C6 C5 H5 120.8 120.4
C5 C6 H6 119.4 120.2
C2' C1' O4' 103.7 103.5
C2' C1' H1' 113.9 110.6
C1' C2' O2' 112.3 110.9
C1' C2' C3' 103.6 102.1
C1' C2' H2' 113.0 110.9
O4' C1' H1' 110.7 110.8
C1' O4' C4' 107.9 107.0
C11 C10 H10 109.0 109.5
C11 C10 H10A 109.0 109.5
C10 C11 C12 114.7 109.5
C10 C11 H11 107.8 109.5
C10 C11 H11A 107.7 109.5
H10 C10 H10A 109.9 109.5
C12 C11 H11 107.8 109.5
C12 C11 H11A 107.8 109.5
C11 C12 C13 110.7 109.4
C11 C12 N40 111.0 109.5
C11 C12 H12 108.0 109.5
H11 C11 H11A 111.1 109.4
C13 C12 N40 110.7 109.5
C13 C12 H12 108.3 109.5
C12 C13 O30 121.4 120.0
C12 C13 O31 121.3 120.0
N40 C12 H12 108.0 109.5
C12 N40 HN40 109.5 111.0
C12 N40 HN4A 109.5 111.0
O30 C13 O31 117.2 120.0
C13 O31 H18 109.5 117.0
O2' C2' C3' 113.5 110.9
O2' C2' H2' 103.0 110.8
C2' O2' HO2' 109.5 114.0
C3' C2' H2' 111.7 111.0
C2' C3' O3' 112.3 110.6
C2' C3' C4' 103.7 104.2
C2' C3' H3' 112.1 110.5
O3' C3' C4' 111.3 110.5
O3' C3' H3' 104.7 110.4
C3' O3' HO3' 109.5 114.0
C4' C3' H3' 113.1 110.6
C3' C4' O4' 107.1 107.3
C3' C4' C5' 113.1 109.9
C3' C4' H4' 108.9 109.9
O4' C4' C5' 110.0 109.9
O4' C4' H4' 112.0 109.9
C5' C4' H4' 105.8 110.0
C4' C5' O5' 110.9 109.5
C4' C5' H5' 109.0 109.5
C4' C5' H5'A 109.0 109.5
HN40 N40 HN4A 109.5 111.0
O5' C5' H5' 109.0 109.4
O5' C5' H5'A 109.0 109.5
H5' C5' H5'A 110.0 109.4
P O11 H20 109.5 113.9

Torsion Angles for 3AU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P O5' OP2 239.5 239.9
OP1 P O5' O11 120.4 119.9
OP2 P O5' O11 240.9 240.0
O5' P OP2 H19 239.2 180.0
C4' C5' O5' P 182.4 180.0
P O5' C5' H5' 62.5 60.0
P O5' C5' H5'A 302.4 300.1
O5' P O11 H20 120.6 300.0
O5' P OP1 OP2 120.2 120.0
OP1 P O5' C5' 297.4 55.0
O5' P OP1 O11 240.1 240.0
OP2 P OP1 O11 119.8 120.0
OP1 P OP2 H19 360.0 300.1
OP1 P O11 H20 0.0 180.0
O5' P OP2 OP1 239.2 240.0
OP2 P O5' C5' 57.9 175.0
O5' P OP2 O11 119.0 120.0
OP1 P OP2 O11 239.8 240.0
OP2 P O11 H20 239.8 59.9
C6 N1 C2 C1' 177.9 180.3
C2 N1 C6 C5 1.4 360.0
C2 N1 C6 H6 181.4 180.0
C2 N1 C1' C2' 88.3 115.0
C2 N1 C1' O4' 205.9 229.1
C2 N1 C1' H1' 326.0 352.2
O2 C2 N1 N3 180.0 179.9
N1 C2 N3 C4 359.5 360.0
N1 C2 N3 C10 181.1 180.0
C2 N1 C6 C1' 182.0 179.7
C6 N1 C2 O2 179.1 180.0
C6 N1 C2 N3 359.2 0.0
C6 N1 C1' C2' 270.3 294.7
C6 N1 C1' O4' 28.0 48.8
C6 N1 C1' H1' 148.1 171.9
C4 C5 C6 N1 359.4 360.0
N1 C6 C5 H5 179.3 180.0
C5 C6 N1 H6 180.0 180.0
C2 N1 C1' C6 177.9 180.3
C1' N1 C2 O2 1.2 359.7
C1' N1 C2 N3 181.2 179.7
C1' N1 C6 C5 179.4 180.3
C1' N1 C6 H6 359.4 0.3
C2' C1' N1 O4' 242.3 245.9
C2' C1' N1 H1' 122.3 122.9
N1 C1' C2' O2' 281.7 273.7
N1 C1' C2' C3' 158.8 155.6
N1 C1' C2' H2' 37.6 37.3
O4' C1' N1 H1' 239.9 236.9
N1 C1' O4' C4' 200.2 201.5
O2 C2 N1 C6 179.1 180.0
O2 C2 N1 C1' 1.2 359.7
N1 C2 O2 N3 180.0 180.1
O2 C2 N3 C4 179.6 180.0
O2 C2 N3 C10 1.2 0.0
N3 C2 N1 C6 359.2 0.0
N3 C2 N1 C1' 181.2 179.7
N1 C2 N3 O2 180.0 179.9
C4 N3 C2 C10 178.4 180.0
C2 N3 C4 O4 181.6 180.1
C2 N3 C4 C5 1.3 360.0
C2 N3 C10 C11 87.8 90.0
C2 N3 C10 H10 207.7 210.0
C2 N3 C10 H10A 327.8 330.0
C2 N3 C4 C10 181.6 180.0
C4 N3 C10 C11 269.4 270.0
C4 N3 C10 H10 29.3 30.0
C4 N3 C10 H10A 149.4 150.0
O4 C4 N3 C5 180.4 180.1
N3 C4 C5 C6 359.3 0.0
N3 C4 C5 H5 179.3 180.0
C2 N3 C10 C4 178.4 180.0
C10 N3 C4 O4 0.0 0.1
C10 N3 C4 C5 179.7 180.0
C11 C10 N3 H10 240.0 240.0
C11 C10 N3 H10A 120.0 120.0
N3 C10 C11 C12 180.6 180.0
N3 C10 C11 H11 300.6 300.0
N3 C10 C11 H11A 60.6 60.0
H10 C10 N3 H10A 240.0 240.0
O4 C4 N3 C10 0.0 0.1
N3 C4 O4 C5 179.7 179.9
O4 C4 C5 C6 179.0 180.0
O4 C4 C5 H5 359.0 359.9
N1 C6 C5 C4 359.4 360.0
C5 C4 N3 C10 179.7 180.0
N3 C4 C5 O4 180.3 180.1
C6 C5 C4 H5 180.0 180.1
C4 C5 C6 H6 179.4 180.0
C5 C6 N1 C1' 179.4 180.3
N1 C6 C5 H6 180.0 180.0
C4 C5 C6 H5 180.0 179.9
C4 C5 H5 C6 180.0 180.1
H5 C5 C6 H6 359.3 0.0
H6 C6 N1 C1' 359.4 0.3
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 H5 359.3 0.0
N1 C1' C2' O4' 124.1 118.5
N1 C1' C2' H1' 244.5 237.2
O4' C1' C2' H1' 120.4 118.7
C2' C1' O4' C4' 322.3 319.9
O2' C2' C1' C3' 122.9 118.2
O2' C2' C1' H2' 244.1 236.4
C1' C2' O2' HO2' 180.0 180.1
C3' C2' C1' H2' 121.1 118.3
C1' C2' C3' O3' 101.1 97.7
C1' C2' C3' C4' 340.9 339.1
C1' C2' C3' H3' 218.5 220.3
N1 C1' O4' C2' 237.9 241.5
N1 C1' O4' H1' 115.4 122.9
C2' C1' O4' H1' 237.5 241.4
O4' C1' C2' O2' 157.6 155.2
O4' C1' C2' C3' 34.6 37.1
O4' C1' C2' H2' 273.5 278.8
C3' C4' O4' C1' 25.5 26.5
C1' O4' C4' C5' 148.9 145.9
C1' O4' C4' H4' 266.2 267.1
N1 C1' H1' C2' 120.8 122.8
N1 C1' H1' O4' 237.1 237.0
C2' C1' H1' O4' 116.3 114.2
H1' C1' C2' O2' 37.2 36.5
H1' C1' C2' C3' 274.3 278.4
H1' C1' C2' H2' 153.2 160.1
H1' C1' O4' C4' 84.7 78.5
N3 C10 C11 H10 120.0 120.0
N3 C10 C11 H10A 240.0 240.0
H10 C10 C11 H10A 120.0 120.0
C12 C11 C10 H11 240.0 240.0
C12 C11 C10 H11A 120.0 120.0
C10 C11 C12 C13 178.3 175.0
C10 C11 C12 N40 301.7 295.0
C10 C11 C12 H12 59.9 55.0
H11 C11 C10 H11A 240.0 240.0
N3 C10 H10 C11 239.0 240.0
N3 C10 H10 H10A 119.5 120.0
C11 C10 H10 H10A 240.6 240.0
H10 C10 C11 C12 60.6 60.0
H10 C10 C11 H11 180.7 180.0
H10 C10 C11 H11A 300.6 300.0
N3 C10 H10A C11 121.1 120.0
N3 C10 H10A H10 240.5 240.0
C11 C10 H10A H10 119.5 120.0
H10A C10 C11 C12 300.6 300.0
H10A C10 C11 H11 60.6 60.0
H10A C10 C11 H11A 180.6 180.0
C12 C11 C10 H10 60.6 60.0
C12 C11 C10 H10A 300.6 300.0
C10 C11 C12 H11 120.0 120.0
C10 C11 C12 H11A 240.0 240.0
H11 C11 C12 H11A 120.0 120.0
C13 C12 C11 N40 236.6 240.0
C13 C12 C11 H12 118.4 120.0
C11 C12 C13 O30 88.9 100.0
C11 C12 C13 O31 271.3 279.9
N40 C12 C11 H12 241.8 240.0
C11 C12 N40 HN40 180.0 176.0
C11 C12 N40 HN4A 300.0 300.0
H11 C11 C10 H10 180.7 180.0
H11 C11 C10 H10A 60.6 60.0
C10 C11 H11 C12 235.7 240.0
C10 C11 H11 H11A 117.8 120.0
C12 C11 H11 H11A 242.1 240.0
H11 C11 C12 C13 58.3 55.0
H11 C11 C12 N40 181.7 175.0
H11 C11 C12 H12 299.9 295.0
H11A C11 C10 H10 300.6 300.0
H11A C11 C10 H10A 180.6 180.0
C10 C11 H11A C12 124.3 120.0
C10 C11 H11A H11 242.2 240.0
C12 C11 H11A H11 117.9 120.0
H11A C11 C12 C13 298.3 295.0
H11A C11 C12 N40 61.7 55.0
H11A C11 C12 H12 179.9 175.0
C13 C12 C11 H11 58.3 55.0
C13 C12 C11 H11A 298.3 295.0
C11 C12 C13 N40 123.6 119.9
C11 C12 C13 H12 241.8 240.0
N40 C12 C13 H12 118.2 120.1
C13 C12 N40 HN40 303.4 295.9
C13 C12 N40 HN4A 63.4 60.0
O30 C13 C12 O31 177.6 180.1
C12 C13 O31 H18 177.7 180.0
N40 C12 C11 H11 181.7 175.0
N40 C12 C11 H11A 61.7 55.0
C11 C12 N40 C13 236.6 240.1
C11 C12 N40 H12 118.2 120.0
C13 C12 N40 H12 241.6 239.9
N40 C12 C13 O30 325.4 340.1
N40 C12 C13 O31 147.7 160.0
HN40 N40 C12 HN4A 240.0 236.0
H12 C12 C11 H11 299.9 295.0
H12 C12 C11 H11A 179.9 175.0
C11 C12 H12 C13 119.9 120.0
C11 C12 H12 N40 239.9 240.0
C13 C12 H12 N40 120.0 120.0
H12 C12 C13 O30 207.1 220.0
H12 C12 C13 O31 29.5 39.9
H12 C12 N40 HN40 61.8 56.0
H12 C12 N40 HN4A 181.8 180.0
O30 C13 C12 N40 325.4 340.1
O30 C13 C12 H12 207.1 220.0
C12 C13 O30 O31 182.3 179.9
O30 C13 O31 H18 360.0 360.0
O31 C13 C12 N40 147.7 160.0
O31 C13 C12 H12 29.5 39.9
C12 C13 O31 O30 177.7 180.1
O2' C2' C1' O4' 157.6 155.2
O2' C2' C1' H1' 37.2 36.5
C1' C2' O2' C3' 242.8 247.3
C1' C2' O2' H2' 121.8 123.6
C3' C2' O2' H2' 239.0 236.3
O2' C2' C3' O3' 339.0 339.6
O2' C2' C3' C4' 218.8 220.9
O2' C2' C3' H3' 96.4 102.1
C3' C2' C1' O4' 34.6 37.1
C3' C2' C1' H1' 274.3 278.4
C1' C2' C3' O2' 122.1 118.2
C1' C2' C3' H2' 238.0 241.8
O2' C2' C3' H2' 115.9 123.6
C3' C2' O2' HO2' 297.2 292.7
O3' C3' C2' C4' 120.2 118.7
O3' C3' C2' H3' 242.5 237.4
C2' C3' O3' HO3' 180.0 61.4
C4' C3' C2' H3' 122.3 118.8
C2' C3' C4' O4' 357.4 358.0
C2' C3' C4' C5' 236.0 238.6
C2' C3' C4' H4' 118.7 117.4
H2' C2' C1' O4' 273.5 278.8
H2' C2' C1' H1' 153.2 160.1
C1' C2' H2' O2' 238.6 236.4
C1' C2' H2' C3' 116.4 112.7
O2' C2' H2' C3' 237.8 236.4
H2' C2' O2' HO2' 58.1 56.4
H2' C2' C3' O3' 223.1 216.0
H2' C2' C3' C4' 102.9 97.3
H2' C2' C3' H3' 340.5 338.5
HO2' O2' C2' C3' 297.2 292.7
HO2' O2' C2' H2' 58.1 56.4
O3' C3' C2' H2' 223.1 216.0
C2' C3' O3' C4' 244.3 245.2
C2' C3' O3' H3' 121.8 122.6
C4' C3' O3' H3' 237.5 237.4
O3' C3' C4' O4' 236.5 239.3
O3' C3' C4' C5' 115.1 119.8
O3' C3' C4' H4' 357.8 358.7
C1' O4' C4' C3' 25.5 26.5
C4' C3' C2' H2' 102.9 97.3
C2' C3' C4' O3' 120.9 118.7
C2' C3' C4' H3' 238.3 241.3
O3' C3' C4' H3' 117.5 122.5
C4' C3' O3' HO3' 295.7 176.2
O4' C4' C3' C5' 121.4 119.5
O4' C4' C3' H4' 238.7 240.6
C5' C4' C3' H4' 117.3 121.1
C3' C4' C5' O5' 180.8 185.0
C3' C4' C5' H5' 300.8 305.0
C3' C4' C5' H5'A 60.9 65.0
H3' C3' C2' H2' 340.5 338.5
C2' C3' H3' O3' 238.1 237.4
C2' C3' H3' C4' 116.8 114.8
O3' C3' H3' C4' 238.7 237.4
H3' C3' O3' HO3' 58.2 298.8
H3' C3' C4' O4' 119.1 116.7
H3' C3' C4' C5' 357.6 357.3
H3' C3' C4' H4' 240.3 236.2
HO3' O3' C3' C4' 295.7 176.2
HO3' O3' C3' H3' 58.2 298.8
C4' O4' C1' H1' 84.7 78.5
O4' C4' C3' H3' 119.1 116.7
C3' C4' O4' C5' 236.6 240.5
C3' C4' O4' H4' 119.3 119.4
C5' C4' O4' H4' 242.6 238.9
O4' C4' C5' O5' 61.1 67.2
O4' C4' C5' H5' 181.1 187.2
O4' C4' C5' H5'A 301.1 307.1
P O5' C5' C4' 182.4 180.0
C5' C4' C3' H3' 357.6 357.3
C3' C4' C5' O4' 119.8 117.8
C3' C4' C5' H4' 240.9 238.9
O4' C4' C5' H4' 121.1 121.1
O5' C5' C4' H5' 240.0 240.0
O5' C5' C4' H5'A 120.0 120.0
H5' C5' C4' H5'A 240.0 240.0
H4' C4' C3' H3' 240.3 236.2
C3' C4' H4' O4' 241.8 242.2
C3' C4' H4' C5' 121.9 121.1
O4' C4' H4' C5' 240.1 238.9
H4' C4' C5' O5' 299.9 306.1
H4' C4' C5' H5' 59.9 66.1
H4' C4' C5' H5'A 179.9 186.0
HN40 N40 C12 H12 61.8 56.0
C12 N40 HN40 HN4A 120.0 124.0
HN4A N40 C12 H12 181.8 180.0
C12 N40 HN4A HN40 240.0 236.0
C5' O5' P OP1 297.4 55.0
C5' O5' P OP2 57.9 175.0
C5' O5' P O11 177.0 295.0
O5' C5' C4' H4' 299.9 306.1
C4' C5' O5' H5' 120.0 120.0
C4' C5' O5' H5'A 240.0 240.0
H5' C5' O5' H5'A 120.0 119.9
H5' C5' C4' H4' 59.9 66.1
C4' C5' H5' O5' 238.9 240.0
C4' C5' H5' H5'A 119.4 120.0
O5' C5' H5' H5'A 240.6 240.0
H5'A C5' C4' H4' 179.9 186.0
C4' C5' H5'A O5' 121.1 120.0
C4' C5' H5'A H5' 240.6 240.0
O5' C5' H5'A H5' 119.4 119.9
O5' P O11 OP1 120.6 120.0
O5' P O11 OP2 240.8 240.0
O11 P O5' C5' 177.0 295.0
OP1 P O11 OP2 120.2 120.0
O11 P OP2 H19 120.2 60.1
H19 OP2 P O11 120.2 60.1