PDB Chemical Component 3AT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 3AT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.460 1.480
PG O2G 1.454 1.610
PG O3G 1.498 1.610
PG O3B 1.609 1.609
O2G HOG2 0.950 0.967
O3G HOG3 0.950 0.967
PB O1B 1.501 1.481
PB O2B 1.446 1.610
PB O3B 1.637 1.610
PB O3A 1.598 1.610
O2B HOB2 0.951 0.967
PA O1A 1.462 1.480
PA O2A 1.495 1.610
PA O3A 1.637 1.610
PA O5' 1.574 1.610
O2A HOA2 0.950 0.967
O5' C5' 1.451 1.429
C5' C4' 1.520 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.089
C4' O4' 1.449 1.444
C4' C3' 1.527 1.550
C4' H4' 1.115 1.090
O4' C1' 1.415 1.438
C3' C2' 1.498 1.548
C3' H3'1 1.116 1.090
C3' H3'2 1.115 1.090
C2' O2' 1.415 1.429
C2' C1' 1.526 1.541
C2' H2'1 1.115 1.090
O2' HO2' 0.950 0.967
C1' N9 1.486 1.465
C1' H1' 1.115 1.091
N9 C8 1.382 1.363
N9 C4 1.359 1.372
C8 N7 1.300 1.301
C8 H8 1.104 1.080
N7 C5 1.382 1.354
C5 C6 1.428 1.406
C5 C4 1.385 1.404
C6 N6 1.323 1.384
C6 N1 1.357 1.329
N6 HN61 1.019 0.970
N6 HN62 1.021 0.970
N1 C2 1.342 1.321
C2 N3 1.349 1.315
C2 H2 1.103 1.081
N3 C4 1.384 1.331

Bond Angles for 3AT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 115.4 109.5
O1G PG O3G 110.5 109.5
O1G PG O3B 105.9 109.5
O2G PG O3G 113.7 109.5
O2G PG O3B 102.2 109.5
PG O2G HOG2 115.5 114.0
O3G PG O3B 108.2 109.5
PG O3G HOG3 110.5 114.1
PG O3B PB 127.2 134.0
O1B PB O2B 130.5 109.5
O1B PB O3B 112.8 109.5
O1B PB O3A 79.0 109.4
O2B PB O3B 112.8 109.5
O2B PB O3A 87.7 109.5
PB O2B HOB2 130.5 114.0
O3B PB O3A 84.1 109.5
PB O3A PA 144.3 134.0
O1A PA O2A 118.3 109.5
O1A PA O3A 108.5 109.4
O1A PA O5' 108.3 109.4
O2A PA O3A 111.9 109.5
O2A PA O5' 110.8 109.5
PA O2A HOA2 118.3 114.0
O3A PA O5' 97.0 109.5
PA O5' C5' 123.2 123.0
O5' C5' C4' 112.1 109.5
O5' C5' H5'1 111.2 109.4
O5' C5' H5'2 111.3 109.5
C4' C5' H5'1 111.2 109.5
C4' C5' H5'2 111.3 109.5
C5' C4' O4' 107.8 110.6
C5' C4' C3' 115.2 110.6
C5' C4' H4' 106.0 110.5
H5'1 C5' H5'2 99.1 109.5
O4' C4' C3' 107.2 103.5
O4' C4' H4' 114.2 110.6
C4' O4' C1' 110.6 107.0
C3' C4' H4' 106.7 110.8
C4' C3' C2' 102.0 102.1
C4' C3' H3'1 115.1 110.9
C4' C3' H3'2 115.1 110.9
O4' C1' C2' 101.9 107.3
O4' C1' N9 108.9 109.9
O4' C1' H1' 115.7 109.8
C2' C3' H3'1 115.1 110.9
C2' C3' H3'2 115.1 110.9
C3' C2' O2' 113.6 110.5
C3' C2' C1' 106.0 104.2
C3' C2' H2'1 109.1 110.4
H3'1 C3' H3'2 95.4 110.8
O2' C2' C1' 109.5 110.5
O2' C2' H2'1 105.6 110.5
C2' O2' HO2' 113.6 114.0
C1' C2' H2'1 113.2 110.6
C2' C1' N9 112.5 109.9
C2' C1' H1' 112.2 109.9
N9 C1' H1' 105.7 110.0
C1' N9 C8 129.5 126.3
C1' N9 C4 125.6 126.3
C8 N9 C4 104.9 107.4
N9 C8 N7 115.1 110.0
N9 C8 H8 125.2 125.0
N9 C4 C5 105.9 106.0
N9 C4 N3 127.0 134.9
N7 C8 H8 119.7 125.0
C8 N7 C5 102.6 109.4
N7 C5 C6 132.8 134.7
N7 C5 C4 111.5 107.2
C6 C5 C4 115.7 118.2
C5 C6 N6 121.5 120.8
C5 C6 N1 118.7 118.5
C5 C4 N3 127.1 119.0
N6 C6 N1 119.8 120.8
C6 N6 HN61 121.5 120.0
C6 N6 HN62 107.9 120.0
C6 N1 C2 119.5 121.1
HN61 N6 HN62 107.9 120.0
N1 C2 N3 128.1 122.5
N1 C2 H2 115.7 118.7
N3 C2 H2 116.3 118.7
C2 N3 C4 110.9 120.6

Torsion Angles for 3AT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 229.2 240.0
O2G PG O1G O3B 112.2 120.0
O1G PG O2G HOG2 180.0 180.0
O3G PG O1G O3B 243.0 240.0
O1G PG O3G HOG3 180.0 300.0
O1G PG O3B PB 114.5 45.0
O1G PG O2G O3G 129.3 120.0
O1G PG O2G O3B 245.6 240.0
O3G PG O2G O3B 116.3 120.0
O2G PG O3G HOG3 311.8 60.0
O2G PG O3B PB 353.3 285.0
O1G PG O3G O2G 228.3 240.0
O1G PG O3G O3B 115.5 120.0
O2G PG O3G O3B 247.3 240.0
O3G PG O2G HOG2 50.7 60.0
O3G PG O3B PB 233.1 165.0
O1G PG O3B O2G 121.2 120.0
O1G PG O3B O3G 241.5 240.0
O2G PG O3B O3G 120.3 120.0
O3B PG O2G HOG2 294.3 300.0
O3B PG O3G HOG3 64.5 180.0
O1B PB O3B PG 286.6 320.0
O2B PB O3B PG 126.2 80.0
PG O3B PB O3A 211.2 200.0
HOG2 O2G PG O3G 50.7 60.0
HOG2 O2G PG O3B 294.3 300.0
HOG3 O3G PG O3B 64.5 180.0
PG O3B PB O1B 286.6 320.0
O2B PB O1B O3B 156.0 240.0
O2B PB O1B O3A 77.3 120.0
O1B PB O2B HOB2 180.0 180.0
O3B PB O1B O3A 281.3 240.0
O1B PB O3A PA 256.3 45.1
PG O3B PB O2B 126.2 80.0
O1B PB O2B O3B 204.0 120.0
O1B PB O2B O3A 286.6 240.1
O3B PB O2B O3A 82.6 120.0
O2B PB O3A PA 124.2 285.1
O1B PB O3B O2B 160.4 240.0
O1B PB O3B O3A 75.4 120.0
O2B PB O3B O3A 275.0 240.0
O3B PB O2B HOB2 336.0 60.0
O3B PB O3A PA 11.0 165.1
O1B PB O3A O2B 132.1 120.0
O1B PB O3A O3B 245.3 240.0
O2B PB O3A O3B 113.2 120.1
O3A PB O2B HOB2 253.3 299.9
O1A PA O3A PB 290.6 319.9
O2A PA O3A PB 62.9 79.9
PB O3A PA O5' 178.6 200.0
HOB2 O2B PB O3B 336.0 60.0
HOB2 O2B PB O3A 253.3 299.9
PB O3A PA O1A 290.6 319.9
O2A PA O1A O3A 231.2 240.0
O2A PA O1A O5' 127.0 120.0
O1A PA O2A HOA2 179.9 180.0
O3A PA O1A O5' 255.8 240.0
O1A PA O5' C5' 301.9 55.0
PB O3A PA O2A 62.9 79.9
O1A PA O2A O3A 127.2 120.0
O1A PA O2A O5' 234.2 240.0
O3A PA O2A O5' 107.0 120.0
O2A PA O5' C5' 170.7 295.1
O1A PA O3A O2A 227.7 240.0
O1A PA O3A O5' 112.0 119.9
O2A PA O3A O5' 244.3 239.9
O3A PA O2A HOA2 52.7 60.0
O3A PA O5' C5' 54.1 175.0
O1A PA O5' O2A 131.2 120.0
O1A PA O5' O3A 247.8 240.1
O2A PA O5' O3A 116.6 120.1
O5' PA O2A HOA2 305.7 299.9
PA O5' C5' C4' 227.9 180.0
PA O5' C5' H5'1 353.2 299.9
PA O5' C5' H5'2 102.6 59.9
HOA2 O2A PA O3A 52.7 60.0
HOA2 O2A PA O5' 305.7 299.9
C4' C5' O5' H5'1 234.7 240.0
C4' C5' O5' H5'2 125.3 120.0
O5' C5' C4' O4' 309.2 66.4
O5' C5' C4' C3' 68.8 180.5
O5' C5' C4' H4' 186.5 303.6
H5'1 C5' O5' H5'2 250.6 240.0
O5' C5' C4' H5'1 125.3 120.0
O5' C5' C4' H5'2 234.7 240.0
H5'1 C5' C4' H5'2 109.4 120.0
O4' C4' C5' C3' 240.4 245.9
O4' C4' C5' H4' 122.7 122.8
C5' C4' O4' C1' 135.5 158.6
C3' C4' C5' H4' 242.3 236.9
C5' C4' C3' C2' 251.9 204.5
C5' C4' C3' H3'1 17.2 322.7
C5' C4' C3' H3'2 126.6 86.3
O5' C5' H5'1 C4' 234.2 240.0
O5' C5' H5'1 H5'2 117.1 120.0
C4' C5' H5'1 H5'2 242.9 240.0
H5'1 C5' C4' O4' 183.9 306.5
H5'1 C5' C4' C3' 303.5 60.5
H5'1 C5' C4' H4' 61.2 183.6
O5' C5' H5'2 C4' 125.8 120.0
O5' C5' H5'2 H5'1 242.9 240.0
C4' C5' H5'2 H5'1 117.1 120.0
H5'2 C5' C4' O4' 74.5 186.5
H5'2 C5' C4' C3' 194.1 300.5
H5'2 C5' C4' H4' 311.8 63.6
O4' C4' C5' H5'1 183.9 306.5
O4' C4' C5' H5'2 74.5 186.5
C5' C4' O4' C3' 124.6 118.5
C5' C4' O4' H4' 242.5 237.2
C3' C4' O4' H4' 117.9 118.7
O4' C4' C3' C2' 11.9 323.0
O4' C4' C3' H3'1 137.1 81.2
O4' C4' C3' H3'2 246.6 204.8
C4' O4' C1' C2' 331.6 333.5
C4' O4' C1' N9 212.5 214.1
C4' O4' C1' H1' 93.7 92.9
C3' C4' C5' H5'1 303.5 60.5
C3' C4' C5' H5'2 194.1 300.5
C5' C4' C3' O4' 240.1 241.5
C5' C4' C3' H4' 117.3 122.9
O4' C4' C3' H4' 237.2 241.4
C3' C4' O4' C1' 10.9 40.1
C2' C3' C4' H3'1 234.7 241.8
C2' C3' C4' H3'2 125.3 118.2
C4' C3' C2' O2' 210.8 262.2
C4' C3' C2' C1' 331.2 20.9
C4' C3' C2' H2'1 93.4 139.7
H3'1 C3' C4' H3'2 250.5 236.4
H4' C4' C5' H5'1 61.2 183.6
H4' C4' C5' H5'2 311.8 63.6
C5' C4' H4' O4' 118.5 122.8
C5' C4' H4' C3' 236.8 237.0
O4' C4' H4' C3' 118.2 114.2
H4' C4' O4' C1' 253.0 281.4
H4' C4' C3' C2' 134.6 81.5
H4' C4' C3' H3'1 259.9 199.8
H4' C4' C3' H3'2 9.3 323.3
C1' O4' C4' C3' 10.9 40.1
C1' O4' C4' H4' 253.0 281.4
C3' C2' C1' O4' 35.7 2.0
O2' C2' C1' O4' 158.7 120.7
O4' C1' C2' H2'1 276.2 243.3
C2' C1' O4' N9 119.1 119.5
C2' C1' O4' H1' 237.9 240.6
N9 C1' O4' H1' 118.8 121.1
O4' C1' N9 C8 51.5 23.6
O4' C1' N9 C4 231.4 203.2
C2' C3' C4' H4' 134.6 81.5
C4' C3' C2' H3'1 125.3 118.2
C4' C3' C2' H3'2 234.7 241.8
O4' C1' C2' C3' 35.7 2.0
H3'1 C3' C2' H3'2 109.4 123.6
O2' C2' C3' C1' 239.6 241.3
O2' C2' C3' H2'1 117.5 122.5
C3' C2' O2' HO2' 180.1 298.5
C1' C2' C3' H2'1 237.8 241.2
C3' C2' C1' N9 152.2 121.5
C3' C2' C1' H1' 271.3 242.6
H3'1 C3' C4' H4' 259.9 199.8
C4' C3' H3'1 C2' 241.9 247.3
C4' C3' H3'1 H3'2 120.9 123.6
C2' C3' H3'1 H3'2 239.1 236.3
H3'1 C3' C2' O2' 85.6 144.0
H3'1 C3' C2' C1' 205.9 262.7
H3'1 C3' C2' H2'1 328.1 21.5
H3'2 C3' C4' H4' 9.3 323.3
C4' C3' H3'2 C2' 118.2 112.7
C4' C3' H3'2 H3'1 239.1 236.4
C2' C3' H3'2 H3'1 120.9 123.7
H3'2 C3' C2' O2' 336.1 20.4
H3'2 C3' C2' C1' 96.5 139.1
H3'2 C3' C2' H2'1 218.7 257.9
O4' C1' C2' O2' 158.7 120.7
O2' C2' C3' H3'1 85.6 144.0
O2' C2' C3' H3'2 336.1 20.4
C3' C2' O2' C1' 118.4 114.7
C3' C2' O2' H2'1 240.5 237.5
C1' C2' O2' H2'1 122.2 122.8
O2' C2' C1' N9 275.2 240.1
O2' C2' C1' H1' 34.3 1.3
O4' C1' C2' N9 243.5 240.5
O4' C1' C2' H1' 124.4 119.4
C1' C2' C3' H3'1 205.9 262.7
C1' C2' C3' H3'2 96.5 139.1
C3' C2' C1' O2' 237.0 241.3
C3' C2' C1' H2'1 119.5 118.7
O2' C2' C1' H2'1 242.5 237.3
C1' C2' O2' HO2' 61.7 183.7
N9 C1' C2' H1' 240.9 238.8
C2' C1' N9 C8 299.3 265.7
C2' C1' N9 C4 119.1 85.4
H2'1 C2' C3' H3'1 328.1 21.5
H2'1 C2' C3' H3'2 218.7 257.9
C3' C2' H2'1 O2' 122.4 122.5
C3' C2' H2'1 C1' 242.2 245.2
O2' C2' H2'1 C1' 119.8 122.7
H2'1 C2' O2' HO2' 299.5 61.0
H2'1 C2' C1' N9 32.7 2.8
H2'1 C2' C1' H1' 151.8 123.9
HO2' O2' C2' C1' 61.7 183.7
HO2' O2' C2' H2'1 299.5 61.0
O4' C1' N9 C2' 112.3 117.9
O4' C1' N9 H1' 235.1 239.0
N9 C1' C2' H2'1 32.7 2.8
C2' C1' N9 H1' 122.8 121.1
C8 N9 C1' C4 180.2 180.3
C1' N9 C8 N7 179.7 180.0
C1' N9 C8 H8 359.7 360.0
C1' N9 C4 C5 180.4 179.9
C1' N9 C4 N3 0.2 0.8
O4' C1' H1' C2' 243.6 242.2
O4' C1' H1' N9 120.6 121.1
H1' C1' C2' H2'1 151.8 123.9
C2' C1' H1' N9 237.0 238.9
H1' C1' N9 C8 176.4 144.6
H1' C1' N9 C4 356.3 324.3
C8 N9 C1' H1' 176.4 144.6
C1' N9 C8 C4 179.9 179.7
C8 N9 C4 C5 0.2 359.6
C8 N9 C4 N3 180.0 180.5
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.0 0.0
C4 N9 C1' H1' 356.3 324.3
C1' N9 C4 C8 180.1 180.3
C4 N9 C8 N7 359.8 0.3
C4 N9 C8 H8 179.8 180.3
N7 C5 C4 N9 359.8 0.4
C6 C5 C4 N9 179.6 180.2
C5 C4 N9 N3 180.2 179.0
C2 N3 C4 N9 180.2 179.6
N7 C8 N9 C4 359.8 0.3
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.3 180.1
C8 N7 C5 C4 0.1 359.7
H8 C8 N9 C4 179.8 180.3
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.0 180.0
N9 C4 C5 N7 359.8 0.4
C5 N7 C8 H8 180.0 180.0
C6 C5 N7 C4 180.2 180.3
N7 C5 C6 N6 360.0 360.0
N7 C5 C6 N1 180.1 180.0
N7 C5 C4 N3 180.0 179.6
N9 C4 C5 C6 179.6 180.2
N7 C5 C6 C4 179.8 179.6
C6 C5 C4 N3 359.8 359.4
N6 C6 C5 N1 179.9 180.0
C5 C6 N6 HN61 180.0 360.0
C5 C6 N6 HN62 54.7 180.0
C5 C6 N1 C2 359.8 360.0
N9 C4 C5 N3 179.8 180.8
N7 C5 C4 C6 180.2 180.3
C4 C5 C6 N6 180.2 180.3
C4 C5 C6 N1 0.3 0.3
C2 N3 C4 C5 360.0 0.6
N6 C6 C5 C4 180.2 180.3
C5 C6 N6 N1 180.1 180.0
N6 C6 N1 C2 179.9 180.0
HN61 N6 C6 HN62 125.3 179.9
N1 C6 C5 C4 0.3 0.3
C5 C6 N1 N6 179.9 180.0
N1 C6 N6 HN61 359.9 180.0
N1 C6 N6 HN62 234.6 0.0
C6 N1 C2 N3 360.0 0.0
C6 N1 C2 H2 180.0 180.0
HN61 N6 C6 N1 359.9 180.0
C6 N6 HN61 HN62 234.7 180.1
HN62 N6 C6 N1 234.6 0.0
C6 N6 HN62 HN61 132.9 179.9
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 0.1 359.6
N9 C4 N3 C2 180.2 179.6
C5 C4 N3 C2 360.0 0.6
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.1 179.7
N9 C4 N3 C5 180.2 178.9
C4 N3 C2 H2 180.1 179.7