PDB Chemical Component 39Q

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 39Q

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C31 C37 1.525 1.507
C31 O32 1.358 1.208
C31 C29 1.539 1.507
C37 C38 1.494 1.530
C37 C39 1.512 1.530
C30 C29 1.537 1.530
C30 C41 1.388 1.507
C42 C41 1.373 1.382
C42 C43 1.374 1.382
C39 O40 1.441 1.429
C29 N28 1.468 1.465
C41 C46 1.370 1.383
C43 C44 1.366 1.382
C46 C45 1.378 1.382
N28 C26 1.332 1.348
C44 C45 1.366 1.383
C26 O27 1.208 1.213
C26 C16 1.526 1.507
C16 C17 1.508 1.530
C16 N15 1.449 1.465
C17 C18 1.375 1.507
C19 C18 1.365 1.382
C19 C20 1.370 1.382
C18 C25 1.366 1.383
N15 C13 1.314 1.348
C20 C21 1.369 1.386
C13 O14 1.208 1.212
C13 C11 1.489 1.507
C25 C24 1.382 1.382
O3 C2 1.213 1.213
C9 C10 1.503 1.531
C9 O8 1.406 1.430
N5 C10 1.465 1.470
N5 C6 1.468 1.469
N5 C4 1.451 1.469
C7 C6 1.505 1.531
C7 O8 1.422 1.430
C2 C4 1.500 1.507
C2 N1 1.309 1.347
C21 C24 1.374 1.388
C21 O22 1.352 1.359
C11 N1 1.425 1.465
C11 C12 1.511 1.530
O22 C23 1.417 1.429
N1 H1 1.001 0.970
C4 H2 1.100 1.090
C4 H3 1.100 1.090
C6 H4 1.100 1.090
C6 H5 1.100 1.090
C7 H6 1.100 1.090
C7 H7 1.100 1.090
C10 H8 1.100 1.090
C10 H9 1.100 1.091
C17 H10 1.100 1.090
C17 H11 1.100 1.089
C20 H12 1.080 1.080
C24 H13 1.080 1.079
C9 H14 1.100 1.090
C9 H15 1.100 1.090
C11 H17 1.100 1.090
C12 H18 1.101 1.089
C12 H19 1.100 1.090
C12 H20 1.100 1.090
N15 H21 1.000 0.971
C16 H22 1.100 1.090
C25 H23 1.080 1.080
C23 H24 1.100 1.090
C23 H25 1.100 1.090
C23 H26 1.100 1.090
C19 H27 1.080 1.080
N28 H28 1.000 0.970
C29 H29 1.100 1.090
C30 H30 1.100 1.090
C30 H31 1.100 1.090
C46 H32 1.080 1.080
C45 H33 1.080 1.080
C44 H34 1.080 1.080
C43 H35 1.080 1.080
C42 H36 1.080 1.080
C37 H39 1.100 1.090
C38 H40 1.100 1.089
C38 H41 1.100 1.090
C38 H42 1.100 1.090
C39 H43 1.100 1.090
C39 H44 1.100 1.090
O40 H45 0.950 0.967

Bond Angles for 39Q

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O32 C31 C37 110.0 120.0
C31 C37 C38 108.7 109.5
C31 C37 C39 110.0 109.4
C31 C37 H39 110.1 109.5
C31 C29 H29 110.3 109.5
C38 C37 C39 107.0 109.5
C38 C37 H39 110.6 109.5
C37 C38 H40 109.5 109.5
C37 C38 H41 109.5 109.5
C37 C38 H42 109.5 109.5
C37 C39 O40 109.7 109.4
C39 C37 H39 110.3 109.5
C37 C39 H43 109.4 109.5
C37 C39 H44 109.4 109.5
C30 C29 H29 110.3 109.4
C30 C41 C46 123.8 120.0
C41 C30 H30 107.1 109.5
C41 C30 H31 107.1 109.5
C42 C41 C46 118.0 120.0
C42 C43 C44 120.1 120.0
C42 C43 H35 120.0 120.0
C43 C42 H36 119.2 120.0
O40 C39 H43 109.4 109.5
O40 C39 H44 109.4 109.5
C39 O40 H45 109.5 114.0
C29 N28 H28 118.3 120.0
C41 C46 C45 120.4 120.0
C41 C46 H32 119.8 120.0
C43 C44 C45 118.8 120.0
C43 C44 H34 120.6 120.0
C44 C43 H35 119.9 120.0
C46 C45 H33 119.4 120.0
C44 C45 H33 119.5 120.0
C45 C44 H34 120.6 120.0
C26 C16 H22 109.1 109.5
C16 C17 C18 110.3 109.5
C16 C17 H10 109.3 109.4
C16 C17 H11 109.3 109.5
C17 C16 H22 109.4 109.5
C16 N15 H21 119.2 120.0
C17 C18 C25 121.4 119.9
C18 C17 H10 109.3 109.5
C18 C17 H11 109.3 109.5
C19 C18 C25 118.8 120.1
C19 C20 C21 120.7 119.9
C19 C20 H12 119.6 120.0
C20 C19 H27 119.5 120.0
C18 C25 C24 120.7 120.1
C18 C25 H23 119.6 120.0
C20 C21 C24 118.8 119.9
C20 C21 O22 118.6 120.1
C21 C20 H12 119.7 120.1
C13 C11 H17 111.8 109.4
C25 C24 H13 120.0 120.1
O3 C2 C4 121.2 120.0
O3 C2 N1 123.5 120.0
C9 C10 H8 109.3 109.5
C9 C10 H9 109.3 109.5
C10 N5 C6 115.2 110.8
N5 C10 H8 109.2 109.5
N5 C10 H9 109.2 109.6
N5 C6 H4 109.3 109.5
N5 C6 H5 109.3 109.5
N5 C4 H2 109.5 109.4
N5 C4 H3 109.5 109.5
C7 C6 H4 109.3 109.5
C7 C6 H5 109.3 109.6
C4 C2 N1 115.3 120.0
C2 C4 H2 109.6 109.5
C2 C4 H3 109.5 109.5
C2 N1 H1 120.0 120.0
O22 C21 C24 122.6 120.0
C21 C24 H13 119.9 120.1
C21 O22 C23 113.7 117.0
C11 N1 H1 119.9 120.0
C12 C11 H17 111.5 109.5
C11 C12 H18 109.5 109.5
C11 C12 H19 109.5 109.5
C11 C12 H20 109.4 109.5
O22 C23 H24 109.5 109.5
O22 C23 H25 109.5 109.4
O22 C23 H26 109.5 109.5
H2 C4 H3 109.5 109.5
H4 C6 H5 109.5 109.5
H6 C7 H7 109.5 109.5
H8 C10 H9 109.5 109.5
H10 C17 H11 109.5 109.5
H14 C9 H15 109.5 109.6
H18 C12 H19 109.5 109.4
H18 C12 H20 109.4 109.5
H19 C12 H20 109.5 109.4
H24 C23 H25 109.4 109.5
H24 C23 H26 109.5 109.5
H25 C23 H26 109.5 109.5
H30 C30 H31 109.5 109.4
H40 C38 H41 109.5 109.5
H40 C38 H42 109.5 109.5
H41 C38 H42 109.5 109.4
H43 C39 H44 109.5 109.5

Torsion Angles for 39Q

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C37 C31 C29 H29 309.5 45.0
C38 C37 C31 C39 116.9 120.0
C38 C37 C31 H39 238.7 240.0
C31 C37 C38 H40 180.0 300.0
C31 C37 C38 H41 300.0 60.0
C31 C37 C38 H42 60.0 180.0
C31 C37 C39 O40 320.0 185.0
C39 C37 C31 H39 121.8 120.0
C31 C37 C39 H43 80.0 305.0
C31 C37 C39 H44 199.9 65.0
O32 C31 C37 C38 159.7 95.0
O32 C31 C37 C39 42.8 335.0
O32 C31 C37 H39 281.0 215.0
O32 C31 C29 H29 188.1 225.0
C30 C29 C31 H29 240.0 240.1
C31 C29 N28 H28 52.4 95.1
C31 C37 C38 C39 241.3 240.1
C31 C37 C38 H39 121.0 120.0
C38 C37 C39 O40 202.1 65.1
C39 C37 C38 H39 239.8 239.9
C38 C37 C39 H43 322.1 185.0
C38 C37 C39 H44 82.1 305.1
H40 C38 C37 H41 240.0 239.9
H40 C38 C37 H42 120.0 120.0
H41 C38 C37 H42 240.0 240.1
C31 C37 C39 C38 117.9 120.0
C31 C37 C39 H39 238.3 240.0
C38 C37 C39 H39 120.4 120.0
C39 C37 C38 H40 298.7 59.9
C39 C37 C38 H41 58.8 180.0
C39 C37 C38 H42 178.7 299.9
O40 C39 C37 H43 239.9 240.0
O40 C39 C37 H44 120.0 120.0
C37 C39 O40 H45 20.5 180.0
H43 C39 C37 H44 240.1 240.0
C31 C29 C30 H29 120.0 120.0
C30 C29 N28 H28 296.2 335.1
C41 C30 C29 H29 39.6 55.0
C42 C41 C30 C46 179.7 180.2
C30 C41 C46 C45 179.5 179.8
C30 C41 C46 H32 359.5 0.0
H30 C30 C41 H31 117.3 120.0
C30 C41 C42 C46 180.3 179.8
C42 C41 C30 H30 58.6 150.2
C42 C41 C30 H31 301.2 30.3
C42 C41 C46 C45 359.8 359.6
C42 C41 C46 H32 179.8 179.8
C43 C42 C41 C46 0.0 0.2
C42 C43 C44 C45 0.1 359.9
C42 C43 C44 H34 180.2 180.0
C44 C43 C42 H35 180.0 180.1
O40 C39 C37 H39 81.7 305.0
C37 C39 O40 H43 120.0 120.0
C37 C39 O40 H44 240.0 240.0
H43 C39 O40 H44 119.9 120.0
C46 C41 C30 H30 238.9 330.0
C46 C41 C30 H31 121.6 210.1
C41 C46 C45 H33 180.3 180.3
C42 C43 C44 H35 180.0 179.9
C44 C43 C42 H36 180.0 180.0
C43 C44 C45 H33 179.7 179.9
C45 C44 C43 H34 180.0 179.9
C41 C46 C45 H32 180.0 180.2
C44 C45 C46 H33 180.0 180.1
C46 C45 C44 H34 179.7 179.8
N28 C26 C16 H22 49.1 60.0
C41 C46 C45 C44 0.3 0.4
C43 C44 C45 H34 180.0 180.1
C45 C44 C43 H35 180.1 180.0
C46 C45 C44 H33 180.0 179.9
O27 C26 C16 H22 229.8 240.1
C26 C16 C17 H10 292.8 295.0
C26 C16 C17 H11 52.6 55.0
C17 C16 C26 H22 239.1 240.0
C26 C16 N15 H21 58.7 25.0
C26 C16 C17 H22 120.7 120.0
C17 C16 N15 H21 297.7 265.0
C16 C17 C18 C25 77.9 90.0
C18 C17 C16 H10 239.9 240.0
C18 C17 C16 H11 120.1 120.0
H10 C17 C16 H11 240.3 240.0
C16 C17 C18 H10 120.1 120.0
C16 C17 C18 H11 239.9 240.0
C18 C17 C16 H22 52.0 55.0
C19 C18 C17 C25 178.9 180.3
C17 C18 C25 C24 179.7 179.8
C17 C18 C25 H23 359.7 0.1
H10 C17 C18 H11 119.8 120.0
C17 C18 C19 C25 181.1 179.7
C19 C18 C17 H10 136.6 150.3
C19 C18 C17 H11 16.9 30.4
C19 C18 C25 C24 0.9 359.4
C19 C18 C25 H23 180.8 179.7
C20 C19 C18 C25 359.1 0.4
C19 C20 C21 C24 359.6 360.0
C19 C20 C21 O22 180.4 180.1
C21 C20 C19 H12 180.0 180.0
C25 C18 C17 H10 317.7 330.0
C25 C18 C17 H11 198.0 210.0
C18 C25 C24 H13 179.4 180.3
N15 C13 C11 H17 346.9 300.0
C19 C20 C21 H12 180.0 180.0
C21 C20 C19 H27 180.7 180.1
O22 C21 C20 C24 180.9 180.1
C20 C21 C24 H13 180.4 180.0
C20 C21 O22 C23 228.3 180.0
O14 C13 C11 H17 164.7 120.0
C13 C11 N1 H1 276.8 335.0
C12 C11 C13 H17 124.6 120.0
C13 C11 C12 H18 180.0 60.0
C13 C11 C12 H19 300.0 180.0
C13 C11 C12 H20 60.0 299.9
C18 C25 C24 H23 180.0 180.3
C21 C24 C25 H13 180.0 180.2
C4 C2 O3 N1 179.7 180.3
O3 C2 C4 H2 237.7 119.7
O3 C2 C4 H3 117.6 239.7
O3 C2 N1 H1 180.1 180.3
N5 C10 C9 H8 239.9 119.9
N5 C10 C9 H9 120.1 240.0
H8 C10 C9 H9 240.2 120.1
C9 C10 N5 H8 120.1 240.1
C9 C10 N5 H9 239.9 120.0
C10 N5 C6 H4 168.6 178.5
C10 N5 C6 H5 288.4 298.6
C10 N5 C4 H2 309.1 70.1
C10 N5 C4 H3 69.2 310.1
H8 C10 N5 H9 119.7 239.9
C6 N5 C10 H8 191.5 61.3
C6 N5 C10 H9 71.8 181.4
C6 N5 C4 H2 184.7 306.4
C6 N5 C4 H3 304.8 186.4
C7 C6 N5 H4 239.9 240.1
C7 C6 N5 H5 120.1 120.0
H4 C6 N5 H5 240.2 239.9
N5 C4 C2 N1 177.3 180.1
C2 C4 N5 H2 240.0 120.0
C2 C4 N5 H3 119.9 239.9
H2 C4 N5 H3 239.9 120.0
N5 C6 C7 H4 120.1 119.9
N5 C6 C7 H5 239.9 240.0
H4 C6 C7 H5 119.8 120.1
O3 C2 C4 N1 180.3 179.7
N5 C4 C2 H2 120.0 240.1
N5 C4 C2 H3 240.1 120.1
C4 C2 N1 H1 0.4 359.9
H2 C4 C2 H3 120.1 240.0
O3 C2 N1 C4 179.7 180.3
N1 C2 C4 H2 57.4 300.0
N1 C2 C4 H3 297.2 60.0
C11 N1 C2 H1 180.0 180.0
C18 C25 C24 C21 359.4 0.5
C20 C21 C24 O22 180.9 180.1
C24 C21 C20 H12 179.6 180.0
C25 C24 C21 H13 180.0 179.8
C24 C21 O22 C23 49.2 0.0
C20 C21 O22 C24 179.1 179.9
O22 C21 C20 H12 0.5 0.1
O22 C21 C24 H13 359.5 359.9
C21 O22 C23 H24 180.0 180.0
C21 O22 C23 H25 300.0 300.0
C21 O22 C23 H26 60.0 60.0
C2 N1 C11 H1 180.0 180.0
C13 C11 C12 H17 235.2 240.0
C12 C11 N1 H1 33.2 95.0
H18 C12 C11 H19 240.0 240.0
H18 C12 C11 H20 120.0 120.1
H19 C12 C11 H20 240.0 240.1
C23 O22 C21 C24 49.2 0.0
H24 C23 O22 H25 240.0 240.0
H24 C23 O22 H26 120.0 120.0
H25 C23 O22 H26 240.0 240.0
N5 C4 H2 H3 120.1 240.0
H2 C4 C2 N1 57.4 300.0
C2 C4 H2 H3 239.8 120.0
N5 C4 H3 H2 239.9 120.0
H3 C4 C2 N1 297.2 60.0
C2 C4 H3 H2 120.2 240.0
N5 C6 H4 H5 119.7 120.1
C7 C6 H4 H5 240.3 239.9
N5 C6 H5 H4 240.3 239.9
C7 C6 H5 H4 119.7 120.1
H6 C7 C6 H4 304.4 63.3
H6 C7 C6 H5 184.5 303.2
H7 C7 C6 H4 65.5 303.2
H7 C7 C6 H5 305.6 183.1
C9 C10 H8 H9 119.7 239.9
H8 C10 N5 C6 191.5 61.3
N5 C10 H8 H9 240.4 120.1
C9 C10 H9 H8 240.3 120.1
H9 C10 N5 C6 71.8 181.4
N5 C10 H9 H8 119.6 239.9
C16 C17 H10 C18 239.3 240.0
C16 C17 H10 H11 119.6 120.0
H10 C17 C16 H22 172.1 175.0
H10 C17 C18 C25 317.7 330.0
C18 C17 H10 H11 240.4 240.0
C16 C17 H11 C18 120.7 120.0
C16 C17 H11 H10 240.4 240.0
H11 C17 C16 H22 291.8 295.0
H11 C17 C18 C25 198.0 210.0
C18 C17 H11 H10 119.6 120.0
C19 C20 H12 C21 180.0 180.0
H12 C20 C19 H27 0.7 0.1
H12 C20 C21 C24 179.6 180.0
H12 C20 C21 O22 0.5 0.1
H14 C9 C10 H8 294.5 177.0
H14 C9 C10 H9 54.3 56.9
H15 C9 C10 H8 55.6 56.8
H15 C9 C10 H9 175.4 296.8
H17 C11 N1 H1 154.6 215.1
H17 C11 C12 H18 304.8 180.0
H17 C11 C12 H19 64.9 300.0
H17 C11 C12 H20 184.9 59.9
H18 C12 C11 H17 304.8 180.0
C11 C12 H18 H19 120.0 120.0
C11 C12 H18 H20 240.0 239.9
H19 C12 H18 H20 120.0 120.0
H19 C12 C11 H17 64.9 300.0
C11 C12 H19 H18 240.0 240.0
C11 C12 H19 H20 120.0 120.0
H18 C12 H19 H20 240.0 240.0
H20 C12 C11 H17 184.9 59.9
C11 C12 H20 H18 120.0 120.1
C11 C12 H20 H19 240.0 240.0
H18 C12 H20 H19 120.0 120.0
H22 C16 C17 C18 52.0 55.0
H22 C16 C17 H10 172.1 175.0
H22 C16 C17 H11 291.8 295.0
H22 C16 N15 H21 179.5 145.0
C18 C25 H23 C24 180.0 179.7
H23 C25 C24 H13 359.4 360.0
O22 C23 H24 H25 120.0 120.0
O22 C23 H24 H26 240.0 240.0
H25 C23 H24 H26 120.0 120.0
O22 C23 H25 H24 240.0 240.0
O22 C23 H25 H26 120.0 119.9
H24 C23 H25 H26 240.0 240.0
O22 C23 H26 H24 120.0 120.0
O22 C23 H26 H25 240.0 240.1
H24 C23 H26 H25 119.9 120.0
H27 C19 C18 C25 179.1 180.2
H27 C19 C20 C21 180.7 180.1
H27 C19 C20 H12 0.7 0.1
H29 C29 N28 H28 176.4 215.1
H30 C30 C29 H29 160.9 175.0
H30 C30 C41 C46 238.9 330.0
C41 C30 H30 H31 244.2 240.0
H31 C30 C29 H29 278.3 295.0
H31 C30 C41 C46 121.6 210.1
C41 C30 H31 H30 115.8 120.0
C41 C46 H32 C45 180.0 179.8
H32 C46 C45 H33 0.3 0.1
H33 C45 C44 H34 359.7 359.9
C43 C44 H34 C45 180.0 179.9
H34 C44 C43 H35 0.1 0.0
H34 C44 C45 H33 359.7 359.9
C42 C43 H35 C44 180.0 180.1
H35 C43 C42 H36 0.1 360.0
H35 C43 C44 C45 180.1 180.0
H35 C43 C44 H34 0.1 0.0
H36 C42 C41 C46 180.0 180.2
H36 C42 C43 C44 180.0 180.0
H36 C42 C43 H35 0.1 360.0
C31 C37 H39 C38 239.9 240.0
C31 C37 H39 C39 121.6 120.0
C38 C37 H39 C39 241.7 240.0
H39 C37 C38 H40 59.0 180.0
H39 C37 C38 H41 179.0 300.1
H39 C37 C38 H42 299.0 60.0
H39 C37 C39 O40 81.7 305.0
H39 C37 C39 H43 201.7 65.0
H39 C37 C39 H44 321.6 185.0
H40 C38 C37 C39 298.7 59.9
H40 C38 C37 H39 59.0 180.0
C37 C38 H40 H41 120.0 120.0
C37 C38 H40 H42 240.0 240.0
H41 C38 H40 H42 120.0 120.0
H41 C38 C37 C39 58.8 180.0
H41 C38 C37 H39 179.0 300.1
C37 C38 H41 H40 240.0 239.9
C37 C38 H41 H42 120.0 119.9
H40 C38 H41 H42 240.0 240.0
H42 C38 C37 C39 178.7 299.9
H42 C38 C37 H39 299.0 60.0
C37 C38 H42 H40 120.0 120.1
C37 C38 H42 H41 240.0 240.1
H40 C38 H42 H41 120.0 120.0
C37 C39 H43 O40 239.8 240.1
H43 C39 C37 H39 201.7 65.0
C37 C39 H43 H44 119.9 120.0
O40 C39 H43 H44 240.1 240.0
H43 C39 O40 H45 260.5 60.0
C37 C39 H44 O40 120.2 120.0
H44 C39 C37 H39 321.6 185.0
C37 C39 H44 H43 240.1 240.0
O40 C39 H44 H43 119.9 120.0
H44 C39 O40 H45 140.6 300.0
H45 O40 C39 H43 260.5 60.0
H45 O40 C39 H44 140.6 300.0