Atom Nomenclature for 39Q

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 39Q

Atom Name (V3) Atom Name (V2)
C2 C2
O3 O3
C4 C4
N5 N5
O8 O8
C10 C10
C6 C6
C9 C9
C7 C7
N1 N1
C11 C11
C12 C12
C13 C13
O14 O14
N15 N15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
O22 O22
C23 C23
C24 C24
C25 C25
C26 C26
O27 O27
N28 N28
C29 C29
C31 C31
O32 O32
C37 C37
C38 C38
C39 C39
O40 O40
C30 C30
C41 C41
C42 C42
C43 C43
C44 C44
C45 C45
C46 C46
H2 H2
H3 H3
H8 H8
H9 H9
H4 H4
H5 H5
H14 H14
H15 H15
H6 H6
H7 H7
H1 H1
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H10 H10
H11 H11
H27 H27
H23 H23
H12 H12
H13 H13
H24 H24
H25 H25
H26 H26
H28 H28
H29 H29
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H30 H30
H31 H31
H36 H36
H35 H35
H34 H34
H33 H33
H32 H32
H39 H39