PDB Chemical Component 38Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 38Z

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C7	C6	1.516	1.533
C7	N1	1.455	1.471
C6	N2	1.472	1.469
C18	N	1.471	1.475
C18	C19	1.511	1.543
C2	N	1.424	1.469
C2	C3	1.498	1.506
N1	C3	1.334	1.348
N1	C4	1.461	1.472
N2	C8	1.435	1.394
N2	C5	1.466	1.468
N	C1	1.472	1.479
C3	O	1.209	1.213
O1	C20	1.248	1.213
C13	C8	1.381	1.391
C13	C12	1.399	1.377
C19	C20	1.469	1.507
C19	C	1.571	1.552
C4	C5	1.487	1.537
C20	N5	1.353	1.348
C8	C9	1.410	1.390
C12	C11	1.399	1.395
C1	C	1.520	1.549
N5	C21	1.402	1.399
C21	C22	1.404	1.401
C21	C26	1.395	1.365
C22	C23	1.374	1.356
C9	C10	1.382	1.378
C11	C10	1.387	1.394
C11	C14	1.482	1.482
C26	C25	1.399	1.406
C23	C24	1.398	1.412
N3	C14	1.342	1.327
N3	C15	1.340	1.321
C24	C25	1.406	1.469
C24	N8	1.347	1.322
C25	C27	1.470	1.397
C32	C31	1.380	1.379
C32	C28	1.393	1.402
C31	N6	1.341	1.320
C14	N4	1.351	1.326
N8	N7	1.362	1.399
C27	C28	1.498	1.474
C27	N7	1.316	1.351
C28	C29	1.391	1.402
C15	C16	1.371	1.387
N6	C30	1.329	1.320
C29	C30	1.384	1.378
N4	C17	1.342	1.323
C16	C17	1.377	1.386
N5	H1	1.000	0.970
C26	H2	1.080	1.079
C32	H3	1.080	1.080
C31	H4	1.080	1.080
C30	H5	1.080	1.080
C29	H6	1.080	1.080
N7	H7	1.001	0.970
C23	H8	1.080	1.080
C22	H9	1.080	1.080
C19	H10	1.100	1.090
C	H11	1.100	1.090
C	H12	1.100	1.089
C18	H13	1.100	1.090
C18	H14	1.100	1.090
C1	H16	1.100	1.090
C1	H17	1.100	1.090
C2	H18	1.100	1.091
C2	H19	1.100	1.090
C7	H20	1.100	1.090
C7	H21	1.100	1.090
C6	H22	1.100	1.089
C6	H23	1.100	1.090
C5	H24	1.100	1.090
C5	H25	1.100	1.090
C4	H26	1.100	1.090
C4	H27	1.100	1.090
C13	H28	1.080	1.080
C12	H29	1.081	1.080
C10	H30	1.080	1.080
C9	H31	1.080	1.080
C17	H32	1.079	1.080
C16	H33	1.080	1.080
C15	H34	1.080	1.081

Bond Angles for 38Z

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C7	C6	N2	111.6	109.3
C6	C7	H20	109.5	109.6
C6	C7	H21	109.5	109.7
C7	C6	H22	108.9	109.5
C7	C6	H23	108.9	109.5
C7	N1	C4	108.5	118.2
C6	N2	C8	119.8	111.0
C6	N2	C5	114.0	111.3
N2	C6	H22	108.9	109.5
N2	C6	H23	108.9	109.5
C18	N	C1	106.0	108.6
N	C18	H13	110.5	109.8
N	C18	H14	110.5	109.9
C18	C19	H10	109.9	110.9
C2	C3	O	121.0	120.0
C3	C2	H18	108.2	109.5
C3	C2	H19	108.2	109.5
N1	C4	C5	107.9	108.3
N1	C4	H26	109.8	109.6
N1	C4	H27	109.9	109.6
C5	N2	C8	112.2	111.0
N2	C8	C9	119.3	120.0
N2	C5	H24	108.4	109.6
N2	C5	H25	108.4	109.5
N	C1	H16	110.4	110.4
N	C1	H17	110.4	110.4
O1	C20	N5	123.4	120.0
C13	C8	C9	118.6	120.1
C13	C12	C11	121.5	119.9
C12	C13	H28	120.0	120.0
C13	C12	H29	119.2	120.0
C	C19	H10	109.1	110.7
C19	C	H11	110.8	111.0
C19	C	H12	110.8	111.0
C4	C5	H24	108.4	109.6
C4	C5	H25	108.4	109.4
C20	N5	C21	129.0	120.0
C20	N5	H1	115.5	120.0
C8	C9	C10	120.7	120.0
C8	C9	H31	119.6	120.0
C12	C11	C10	117.9	119.9
C12	C11	C14	120.6	120.0
C11	C12	H29	119.3	120.1
C1	C	H11	110.8	111.0
C1	C	H12	110.8	111.1
N5	C21	C22	122.3	119.3
N5	C21	C26	117.3	119.2
C21	N5	H1	115.5	120.0
C26	C21	C22	120.4	121.5
C21	C22	C23	121.4	121.7
C21	C22	H9	119.3	119.2
C21	C26	C25	119.2	119.5
C21	C26	H2	120.4	120.3
C22	C23	H8	121.1	120.1
C9	C10	H30	119.4	120.0
C10	C11	C14	121.1	120.1
C11	C10	H30	119.4	120.1
C11	C14	N4	117.2	119.2
C26	C25	C27	136.5	134.7
C25	C26	H2	120.4	120.2
N3	C15	H34	118.2	120.4
C25	C27	C28	130.0	126.2
C25	C27	N7	108.2	107.5
C32	C31	N6	122.9	120.9
C31	C32	H3	120.5	120.5
C32	C31	H4	118.6	119.5
C32	C28	C29	118.5	118.1
C31	N6	C30	117.6	122.1
N6	C31	H4	118.5	119.6
C14	N4	C17	115.5	120.7
N8	N7	H7	125.7	125.1
C28	C27	N7	121.6	126.3
C27	C28	C29	119.7	120.9
C27	N7	H7	125.6	125.1
C28	C29	C30	118.1	119.0
C28	C29	H6	121.0	120.5
C15	C16	H33	121.9	120.7
N6	C30	H5	118.0	119.5
C29	C30	H5	118.0	119.6
N4	C17	H32	118.4	120.4
C16	C17	H32	118.4	120.4
H11	C	H12	109.5	110.9
H13	C18	H14	109.5	110.0
H16	C1	H17	109.5	110.5
H18	C2	H19	109.5	109.5
H20	C7	H21	109.4	109.8
H22	C6	H23	109.5	109.5
H24	C5	H25	109.5	109.5
H26	C4	H27	109.5	109.8

Torsion Angles for 38Z

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C7	N1	C4	65.8	51.5
C7	C6	N2	C8	181.0	187.3
C7	C6	N2	C5	44.0	63.2
N2	C6	C7	H22	239.7	240.0
N2	C6	C7	H23	120.3	119.9
H20	C7	C6	H21	240.0	120.6
H22	C6	C7	H23	240.6	239.9
C7	N1	C4	C5	294.2	308.4
C7	N1	C4	H26	54.0	68.2
C7	N1	C4	H27	174.5	188.8
N2	C6	C7	H20	65.9	186.5
N2	C6	C7	H21	185.9	65.8
C7	C6	N2	H22	120.3	120.0
C7	C6	N2	H23	239.7	240.1
C5	N2	C6	C8	223.1	235.9
C6	N2	C8	C9	198.6	180.0
C6	N2	C5	H24	74.7	56.8
C6	N2	C5	H25	193.5	176.9
H22	C6	N2	H23	119.4	120.1
N	C18	C19	H10	222.1	263.9
C18	N	C1	H16	82.9	217.1
C18	N	C1	H17	204.1	94.7
H13	C18	N	H14	238.7	121.2
C	C19	C18	H10	117.6	118.4
C18	C19	C	H11	117.8	82.4
C18	C19	C	H12	239.5	206.1
C2	N	C18	H13	291.9	3.8
C2	N	C18	H14	53.2	242.7
C2	N	C1	H16	308.3	94.8
C2	N	C1	H17	69.5	332.4
H18	C2	C3	H19	118.5	120.0
N1	C3	C2	H18	46.3	60.0
N1	C3	C2	H19	287.8	300.0
N1	C4	C5	H24	295.0	294.1
N1	C4	C5	H25	176.4	174.0
H26	C4	N1	H27	239.5	239.4
C6	N2	C8	C5	222.4	235.7
C8	N2	C6	H22	60.7	67.3
C8	N2	C6	H23	301.3	307.2
C8	N2	C5	H24	294.5	292.7
C8	N2	C5	H25	53.3	52.8
C13	C8	N2	C9	173.2	180.3
N2	C8	C9	C10	171.2	179.7
N2	C8	C9	H31	351.2	360.0
C6	N2	C5	C8	140.2	124.1
C5	N2	C6	H22	283.7	303.2
C5	N2	C6	H23	164.3	183.1
N1	C4	C5	N2	55.7	54.1
C5	N2	C8	C9	336.3	304.3
C4	C5	N2	H24	239.4	239.9
C4	C5	N2	H25	120.6	119.8
H24	C5	N2	H25	241.3	239.8
C1	N	C18	H13	154.8	241.5
C1	N	C18	H14	276.1	120.4
N	C1	C	H11	263.4	279.0
N	C1	C	H12	141.7	155.2
H16	C1	N	H17	238.8	122.4
O	C3	C2	H18	232.1	240.0
O	C3	C2	H19	113.6	120.0
O1	C20	N5	C21	357.1	355.6
O1	C20	N5	H1	177.1	175.6
N2	C8	C13	C9	186.7	179.7
C13	C8	C9	C10	357.7	359.4
C13	C8	C9	H31	177.8	179.7
C12	C13	C8	C9	359.7	0.3
C13	C12	C11	C10	358.2	360.0
C13	C12	C11	C14	171.2	180.0
C11	C12	C13	H29	180.0	180.0
C19	C20	N5	H1	357.1	355.8
C18	C19	C	H10	241.9	241.4
C1	C	C19	H11	240.9	242.0
C1	C	C19	H12	119.1	118.2
H11	C	C19	H12	238.3	236.3
N1	C4	C5	H26	119.7	119.7
N1	C4	C5	H27	240.3	240.4
C4	C5	N2	C8	173.9	172.6
N2	C5	C4	H24	120.6	120.0
N2	C5	C4	H25	239.3	240.2
H24	C5	C4	H25	118.7	120.1
C20	N5	C21	C22	345.8	215.3
C20	N5	C21	C26	165.1	35.6
C21	N5	C20	H1	180.0	180.0
C8	C9	C10	H30	182.8	180.3
C11	C12	C13	H28	182.3	180.0
C13	C12	C11	H29	180.0	180.0
C10	C11	C12	C14	187.0	180.0
C12	C11	C10	H30	179.2	180.0
C12	C11	C14	N4	199.4	180.0
C1	C	C19	H10	116.7	82.9
C19	C	C1	H11	119.1	118.0
C19	C	C1	H12	240.9	241.9
H11	C	C1	H12	121.7	123.8
C20	N5	C21	H1	180.0	180.0
C26	C21	N5	C22	179.3	180.3
N5	C21	C22	C23	177.6	179.7
N5	C21	C22	H9	357.6	360.0
N5	C21	C26	C25	183.4	180.0
N5	C21	C26	H2	3.4	360.0
N5	C21	C22	C26	179.3	180.3
C22	C21	N5	H1	165.8	35.3
C22	C21	C26	C25	2.7	0.3
C22	C21	C26	H2	182.7	180.2
C21	C22	C23	H8	179.4	180.3
N5	C21	C26	C22	180.7	179.7
C26	C21	N5	H1	345.1	215.6
C26	C21	C22	C23	358.4	359.4
C26	C21	C22	H9	178.4	179.7
C21	C26	C25	C27	179.6	180.0
C25	C26	C21	H2	180.0	180.1
C21	C22	C23	H9	180.0	180.3
C8	C9	C10	H31	180.0	180.3
C9	C10	C11	C14	186.3	179.8
C11	C10	C9	H30	180.0	180.3
C8	C9	C10	C11	2.8	0.6
C12	C11	C10	C14	172.9	180.0
C10	C11	C12	H29	178.2	180.0
C9	C10	C11	H30	180.0	179.7
C10	C11	C14	N4	12.2	360.0
C12	C11	C14	C10	187.3	180.0
C14	C11	C12	H29	351.2	360.0
C14	C11	C10	H30	6.3	0.0
C11	C14	N4	C17	174.1	180.0
C25	C26	C21	C22	2.7	0.3
C21	C26	C25	H2	180.0	179.9
C26	C25	C27	C28	353.5	360.0
C26	C25	C27	N7	178.7	180.0
C21	C22	C23	C24	359.4	0.6
N3	C15	C16	H33	178.6	179.8
C24	C25	C26	H2	178.5	180.0
C24	N8	N7	H7	181.1	180.0
C27	C25	C26	H2	359.6	0.1
C28	C27	C25	N7	174.8	180.0
C25	C27	C28	C29	159.6	135.0
C25	C27	N7	H7	179.6	180.0
C31	C32	C28	C29	1.3	0.3
C32	C31	N6	C30	359.6	0.0
N6	C31	C32	H4	180.0	180.0
C32	C28	C27	N7	161.3	135.3
C27	C28	C32	C29	172.6	179.8
C32	C28	C29	C30	358.3	359.4
C32	C28	C29	H6	178.3	179.7
N6	C31	C32	H3	179.7	180.0
C32	C31	N6	H4	180.0	180.0
C31	N6	C30	H5	179.9	180.0
C14	N4	C17	H32	184.0	180.0
C27	N7	N8	H7	180.0	180.0
C25	C27	C28	N7	185.8	180.0
C32	C28	C27	C29	187.5	180.2
C28	C27	N7	H7	4.3	360.0
C27	C28	C29	C30	185.6	179.7
C27	C28	C29	H6	5.6	359.9
C25	C27	N7	C28	175.3	180.0
N8	N7	C27	H7	180.0	180.0
N7	C27	C28	C29	333.8	315.0
C29	C28	C27	N7	333.8	315.0
C28	C29	C30	H5	181.2	180.3
C15	C16	C17	H32	177.7	180.0
C30	N6	C31	H4	179.6	180.0
C28	C29	C30	N6	1.2	0.6
C29	C30	N6	H5	180.0	179.7
C28	C29	C30	H6	180.0	180.2
N6	C30	C29	H5	180.0	180.3
C16	C17	N4	H32	180.0	180.0
N4	C17	C16	H32	180.0	180.0
C20	N5	H1	C21	180.0	180.0
H1	N5	C21	C22	165.8	35.3
H1	N5	C21	C26	345.1	215.6
H2	C26	C21	C22	182.7	180.2
C21	C26	H2	C25	180.0	180.1
H2	C26	C25	C27	359.6	0.1
H3	C32	C31	N6	179.7	180.0
H3	C32	C31	H4	359.8	0.1
H3	C32	C28	C29	181.3	180.2
C32	C31	H4	N6	180.0	180.0
H4	C31	C32	H3	359.8	0.1
H4	C31	N6	C30	179.6	180.0
C28	C29	H6	C30	180.0	179.8
H6	C29	C30	H5	1.2	0.0
C21	C22	H9	C23	180.0	179.7
H9	C22	C23	H8	359.4	0.0
H10	C19	C	H11	235.9	201.0
H10	C19	C	H12	357.6	324.7
H11	C	C19	H10	235.9	201.0
C19	C	H11	H12	122.5	123.8
C1	C	H11	H12	237.5	236.0
H12	C	C19	H10	357.6	324.7
C19	C	H12	H11	237.5	236.2
C1	C	H12	H11	122.5	123.9
H13	C18	N	C1	154.8	241.5
N	C18	H13	H14	121.9	238.9
H13	C18	C19	H10	102.8	23.2
H14	C18	N	C1	276.1	120.4
N	C18	H14	H13	238.1	121.1
H14	C18	C19	H10	341.4	144.5
N	C1	H16	H17	121.8	237.7
H16	C1	C	H11	144.1	37.9
H16	C1	C	H12	22.4	274.0
N	C1	H17	H16	238.2	122.4
H17	C1	C	H11	22.8	160.2
H17	C1	C	H12	261.1	36.4
H18	C2	C3	O	232.1	240.0
C3	C2	H18	H19	242.3	240.0
H19	C2	C3	O	113.6	120.0
C3	C2	H19	H18	117.7	120.0
H20	C7	C6	N2	65.9	186.5
C6	C7	H20	H21	120.0	239.5
H20	C7	C6	H22	186.2	306.5
H20	C7	C6	H23	305.6	66.5
H20	C7	N1	C4	305.8	171.2
H21	C7	C6	N2	185.9	65.8
C6	C7	H21	H20	239.9	120.5
H21	C7	C6	H22	306.2	185.8
H21	C7	C6	H23	65.6	305.9
H21	C7	N1	C4	185.8	291.8
C7	C6	H22	N2	238.1	240.2
H22	C6	C7	H20	186.2	306.5
H22	C6	C7	H21	306.2	185.8
C7	C6	H22	H23	119.0	120.0
H22	C6	N2	C8	60.7	67.3
H22	C6	N2	C5	283.7	303.2
N2	C6	H22	H23	241.0	239.9
C7	C6	H23	N2	121.9	119.8
H23	C6	C7	H20	305.6	66.5
H23	C6	C7	H21	65.6	305.9
C7	C6	H23	H22	241.0	239.9
H23	C6	N2	C8	301.3	307.2
H23	C6	N2	C5	164.3	183.1
N2	C6	H23	H22	119.0	120.1
H24	C5	N2	C8	294.5	292.7
N2	C5	H24	H25	118.1	120.2
C4	C5	H24	H25	242.0	240.0
H25	C5	N2	C8	53.3	52.8
N2	C5	H25	H24	241.9	239.8
C4	C5	H25	H24	118.0	120.2
N1	C4	H26	C5	241.5	241.2
N1	C4	H26	H27	120.7	120.5
H26	C4	C5	H24	175.3	174.4
H26	C4	C5	H25	56.6	54.3
N1	C4	H27	C5	118.5	118.7
N1	C4	H27	H26	239.3	239.5
H27	C4	C5	H24	54.8	53.6
H27	C4	C5	H25	296.1	293.5
H28	C13	C8	C9	179.7	180.3
H28	C13	C12	C11	182.3	180.0
H28	C13	C12	H29	2.3	360.0
C13	C12	H29	C11	180.0	180.0
H29	C12	C13	H28	2.3	360.0
H29	C12	C11	C10	178.2	180.0
H29	C12	C11	C14	351.2	360.0
H30	C10	C11	C14	6.3	0.0
C8	C9	H31	C10	180.0	179.7
H31	C9	C10	H30	2.8	0.0
H33	C16	C17	H32	357.7	360.0
H34	C15	C16	H33	358.6	0.0