PDB Chemical Component 38D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 38D
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O07 |
C04 |
1.408 |
1.358 |
| C05 |
C04 |
1.387 |
1.388 |
| C05 |
C06 |
1.388 |
1.379 |
| C04 |
C02 |
1.384 |
1.394 |
| C06 |
C08 |
1.385 |
1.397 |
| C02 |
O03 |
1.407 |
1.360 |
| C02 |
C01 |
1.384 |
1.381 |
| C08 |
C01 |
1.386 |
1.398 |
| C08 |
C09 |
1.513 |
1.475 |
| C09 |
O10 |
1.215 |
1.216 |
| C09 |
N11 |
1.418 |
1.347 |
| N11 |
N12 |
1.380 |
1.400 |
| N12 |
C13 |
1.305 |
1.299 |
| C13 |
C14 |
1.510 |
1.474 |
| CL2 |
C20 |
1.745 |
1.736 |
| C14 |
C20 |
1.384 |
1.398 |
| C14 |
C15 |
1.387 |
1.397 |
| C20 |
C19 |
1.384 |
1.380 |
| C15 |
C16 |
1.387 |
1.379 |
| C19 |
C17 |
1.386 |
1.384 |
| C16 |
C17 |
1.389 |
1.385 |
| C17 |
CL1 |
1.743 |
1.736 |
| C13 |
H1 |
1.079 |
1.080 |
| C15 |
H2 |
1.079 |
1.080 |
| C01 |
H3 |
1.080 |
1.080 |
| O03 |
H4 |
0.950 |
0.968 |
| C05 |
H5 |
1.080 |
1.080 |
| C06 |
H6 |
1.080 |
1.081 |
| O07 |
H7 |
0.950 |
0.967 |
| N11 |
H8 |
1.000 |
0.971 |
| C16 |
H9 |
1.080 |
1.081 |
| C19 |
H10 |
1.080 |
1.080 |
Bond Angles for 38D
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C05 |
C06 |
C08 |
119.2 |
120.1 |
| C06 |
C05 |
H5 |
119.7 |
119.9 |
| C05 |
C06 |
H6 |
120.4 |
120.0 |
| C06 |
C08 |
C09 |
121.7 |
120.1 |
| C08 |
C06 |
H6 |
120.4 |
120.0 |
| C02 |
O03 |
H4 |
109.5 |
114.0 |
| C02 |
C01 |
H3 |
119.8 |
120.1 |
| C08 |
C01 |
H3 |
119.8 |
120.1 |
| C08 |
C09 |
O10 |
121.7 |
119.9 |
| C08 |
C09 |
N11 |
116.2 |
120.1 |
| O10 |
C09 |
N11 |
122.0 |
120.0 |
| C09 |
N11 |
H8 |
117.5 |
120.0 |
| N12 |
C13 |
C14 |
123.7 |
120.0 |
| N12 |
C13 |
H1 |
118.2 |
119.9 |
| C13 |
C14 |
C20 |
117.8 |
120.2 |
| C13 |
C14 |
C15 |
121.9 |
120.1 |
| C14 |
C13 |
H1 |
118.2 |
120.1 |
| C14 |
C20 |
C19 |
120.3 |
119.9 |
| C14 |
C15 |
C16 |
119.5 |
119.8 |
| C14 |
C15 |
H2 |
120.2 |
120.1 |
| C20 |
C19 |
H10 |
120.2 |
119.9 |
| C15 |
C16 |
C17 |
120.2 |
120.2 |
| C16 |
C15 |
H2 |
120.2 |
120.1 |
| C15 |
C16 |
H9 |
119.9 |
119.9 |
| C16 |
C17 |
CL1 |
120.4 |
119.9 |
Torsion Angles for 38D
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C05 |
C06 |
C08 |
C09 |
180.0 |
180.0 |
| C08 |
C06 |
C05 |
H6 |
180.0 |
179.8 |
| C04 |
C02 |
O03 |
H4 |
180.0 |
270.0 |
| C04 |
C02 |
C01 |
H3 |
180.1 |
180.0 |
| C08 |
C06 |
C05 |
H5 |
179.9 |
179.7 |
| C05 |
C06 |
C08 |
H6 |
180.0 |
180.2 |
| C06 |
C08 |
C01 |
H3 |
179.8 |
179.8 |
| C06 |
C08 |
C09 |
O10 |
6.4 |
180.0 |
| C06 |
C08 |
C09 |
N11 |
186.3 |
360.0 |
| O03 |
C02 |
C01 |
H3 |
0.2 |
359.9 |
| C08 |
C01 |
C02 |
H3 |
180.0 |
180.4 |
| C02 |
C01 |
C08 |
H3 |
180.0 |
179.6 |
| C09 |
C08 |
C06 |
H6 |
360.0 |
359.8 |
| C09 |
C08 |
C01 |
H3 |
0.0 |
0.3 |
| O10 |
C09 |
C08 |
N11 |
180.1 |
180.1 |
| C08 |
C09 |
N11 |
H8 |
0.1 |
0.0 |
| C08 |
C09 |
O10 |
N11 |
179.9 |
179.9 |
| O10 |
C09 |
N11 |
H8 |
180.1 |
180.0 |
| C08 |
C09 |
N11 |
O10 |
180.1 |
180.1 |
| N11 |
N12 |
C13 |
C14 |
181.0 |
180.0 |
| N11 |
N12 |
C13 |
H1 |
1.0 |
0.0 |
| N12 |
C13 |
C14 |
C20 |
164.0 |
0.0 |
| N12 |
C13 |
C14 |
C15 |
344.3 |
180.0 |
| C14 |
C13 |
N12 |
H1 |
180.0 |
179.9 |
| N12 |
C13 |
C14 |
H1 |
180.0 |
180.1 |
| C13 |
C14 |
C20 |
C19 |
180.1 |
180.5 |
| C13 |
C14 |
C15 |
C16 |
179.8 |
180.0 |
| C13 |
C14 |
C15 |
H2 |
359.9 |
359.7 |
| CL2 |
C20 |
C19 |
H10 |
359.9 |
0.8 |
| C13 |
C14 |
C20 |
C15 |
180.3 |
180.0 |
| C20 |
C14 |
C13 |
H1 |
344.0 |
180.0 |
| C20 |
C14 |
C15 |
C16 |
0.1 |
360.0 |
| C20 |
C14 |
C15 |
H2 |
180.1 |
179.7 |
| C14 |
C20 |
C19 |
H10 |
180.0 |
180.0 |
| C13 |
C14 |
C15 |
C20 |
179.7 |
180.0 |
| C15 |
C14 |
C13 |
H1 |
164.3 |
360.0 |
| C14 |
C15 |
C16 |
C17 |
360.0 |
359.8 |
| C16 |
C15 |
C14 |
H2 |
180.0 |
180.3 |
| C14 |
C15 |
C16 |
H9 |
179.9 |
179.7 |
| C14 |
C15 |
C16 |
H2 |
180.0 |
179.7 |
| C15 |
C16 |
C17 |
CL1 |
180.0 |
180.0 |
| C17 |
C16 |
C15 |
H2 |
179.9 |
180.1 |
| C15 |
C16 |
C17 |
H9 |
180.0 |
179.9 |
| N12 |
C13 |
H1 |
C14 |
180.0 |
179.9 |
| H1 |
C13 |
C14 |
C20 |
344.0 |
180.0 |
| H1 |
C13 |
C14 |
C15 |
164.3 |
360.0 |
| C14 |
C15 |
H2 |
C16 |
180.0 |
180.3 |
| H2 |
C15 |
C16 |
C17 |
179.9 |
180.1 |
| H2 |
C15 |
C16 |
H9 |
359.9 |
0.0 |
| H5 |
C05 |
C06 |
C08 |
179.9 |
179.7 |
| H5 |
C05 |
C06 |
H6 |
359.9 |
360.0 |
| C05 |
C06 |
H6 |
C08 |
180.0 |
179.8 |
| H6 |
C06 |
C05 |
H5 |
359.9 |
360.0 |
| H6 |
C06 |
C08 |
C09 |
360.0 |
359.8 |
| C15 |
C16 |
H9 |
C17 |
180.0 |
180.1 |
| H9 |
C16 |
C15 |
H2 |
359.9 |
0.0 |
| H9 |
C16 |
C17 |
CL1 |
360.0 |
0.1 |