PDB Chemical Component 380

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 380

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N1	1.355	1.379
C1	N2	1.353	1.304
C1	C2	1.475	1.478
N1	H1N1	1.020	0.971
N1	H1N2	1.020	0.970
N2	HN2	1.020	0.970
C2	C3	1.426	1.396
C2	C7	1.401	1.397
C3	C4	1.397	1.378
C3	H3	1.103	1.081
C4	C5	1.403	1.392
C4	H4	1.103	1.080
C5	N3	1.415	1.392
C5	C6	1.409	1.391
N3	C11	1.499	1.465
N3	HA	1.019	0.970
C11	C22	1.477	1.507
C11	C12	1.542	1.507
C11	H11	1.115	1.090
C22	N24	1.355	1.347
C22	O23	1.222	1.213
N24	C25	1.492	1.465
N24	H24	1.020	0.969
C25	C26	1.501	1.507
C25	H251	1.115	1.090
C25	H252	1.115	1.090
C26	C27	1.389	1.382
C26	C31	1.390	1.382
C27	C28	1.384	1.382
C27	H27	1.103	1.080
C28	C29	1.392	1.381
C28	H28	1.103	1.080
C29	C30	1.392	1.382
C29	H29	1.103	1.080
C30	C31	1.390	1.383
C30	H30	1.103	1.080
C31	H31	1.103	1.080
C12	C17	1.406	1.383
C12	C16	1.394	1.382
C17	C19	1.409	1.386
C17	H17	1.103	1.080
C19	O2	1.385	1.360
C19	C20	1.398	1.391
O2	C24	1.425	1.429
C24	H241	1.115	1.089
C24	H242	1.115	1.090
C24	H243	1.115	1.090
C20	O3	1.398	1.360
C20	C18	1.393	1.386
O3	C32	1.438	1.429
C32	H321	1.115	1.090
C32	H322	1.115	1.090
C32	H323	1.115	1.090
C16	C18	1.392	1.383
C16	H16	1.103	1.080
C18	H18	1.103	1.080
C6	C7	1.391	1.377
C6	H6	1.103	1.080
C7	H7	1.103	1.080

Bond Angles for 380

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	N2	112.4	119.9
N1	C1	C2	123.8	120.0
C1	N1	H1N1	112.4	119.9
C1	N1	H1N2	123.8	120.0
N2	C1	C2	123.3	120.0
C1	N2	HN2	92.5	120.0
C1	C2	C3	121.5	120.1
C1	C2	C7	119.3	120.1
H1N1	N1	H1N2	123.4	120.0
C3	C2	C7	118.3	119.9
C2	C3	C4	121.6	120.0
C2	C3	H3	119.2	120.0
C2	C7	C6	120.1	119.9
C2	C7	H7	119.9	120.0
C4	C3	H3	119.2	120.0
C3	C4	C5	119.2	120.0
C3	C4	H4	120.4	119.9
C5	C4	H4	120.4	120.0
C4	C5	N3	122.4	119.9
C4	C5	C6	119.4	120.1
N3	C5	C6	117.1	120.0
C5	N3	C11	117.3	120.0
C5	N3	HA	121.3	120.0
C5	C6	C7	121.4	120.1
C5	C6	H6	119.3	120.0
C11	N3	HA	121.3	120.0
N3	C11	C22	112.6	109.5
N3	C11	C12	117.9	109.5
N3	C11	H11	105.0	109.5
C22	C11	C12	110.1	109.4
C22	C11	H11	105.0	109.4
C11	C22	N24	121.3	120.0
C11	C22	O23	123.0	120.0
C12	C11	H11	105.0	109.5
C11	C12	C17	125.0	119.9
C11	C12	C16	116.7	119.9
N24	C22	O23	115.2	120.0
C22	N24	C25	108.0	120.0
C22	N24	H24	126.0	120.0
C25	N24	H24	126.0	120.0
N24	C25	C26	110.6	109.5
N24	C25	H251	111.8	109.5
N24	C25	H252	111.8	109.5
C26	C25	H251	111.8	109.5
C26	C25	H252	111.8	109.4
C25	C26	C27	114.9	120.0
C25	C26	C31	118.2	120.0
H251	C25	H252	98.6	109.4
C27	C26	C31	119.9	120.0
C26	C27	C28	119.9	120.0
C26	C27	H27	120.0	120.0
C26	C31	C30	120.5	120.0
C26	C31	H31	119.8	120.1
C28	C27	H27	120.0	120.0
C27	C28	C29	119.9	120.0
C27	C28	H28	120.0	120.0
C29	C28	H28	120.0	120.0
C28	C29	C30	120.5	120.0
C28	C29	H29	119.7	120.0
C30	C29	H29	119.8	119.9
C29	C30	C31	119.1	120.0
C29	C30	H30	120.5	120.0
C31	C30	H30	120.5	120.0
C30	C31	H31	119.7	120.0
C17	C12	C16	118.1	120.2
C12	C17	C19	119.7	120.0
C12	C17	H17	120.1	120.0
C12	C16	C18	122.5	120.1
C12	C16	H16	118.7	120.0
C19	C17	H17	120.1	120.0
C17	C19	O2	122.8	120.0
C17	C19	C20	121.0	119.9
O2	C19	C20	116.0	120.1
C19	O2	C24	119.6	106.8
C19	C20	O3	117.5	120.1
C19	C20	C18	119.3	119.9
O2	C24	H241	119.6	109.5
O2	C24	H242	108.6	109.4
O2	C24	H243	108.6	109.5
H241	C24	H242	108.6	109.4
H241	C24	H243	108.6	109.5
H242	C24	H243	101.4	109.5
O3	C20	C18	122.4	120.1
C20	O3	C32	122.5	106.8
C20	C18	C16	119.4	120.0
C20	C18	H18	120.3	120.0
O3	C32	H321	122.5	109.5
O3	C32	H322	107.6	109.5
O3	C32	H323	107.6	109.5
H321	C32	H322	107.6	109.5
H321	C32	H323	107.5	109.4
H322	C32	H323	102.2	109.5
C18	C16	H16	118.8	119.9
C16	C18	H18	120.3	120.0
C7	C6	H6	119.3	119.9
C6	C7	H7	119.9	120.1

Torsion Angles for 380

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N2	C1	N1	C2	187.5	180.0
N1	C1	N2	HN2	112.5	359.9
N1	C1	C2	C3	1.2	180.0
N1	C1	C2	C7	192.0	359.9
H1N1	N1	C1	H1N2	172.5	180.0
N1	C1	N2	C2	172.5	180.0
N2	C1	N1	H1N1	180.0	180.1
N2	C1	N1	H1N2	7.5	0.1
N2	C1	C2	C3	172.9	360.0
N2	C1	C2	C7	3.7	179.9
N1	C1	C2	N2	188.3	180.0
C2	C1	N1	H1N1	352.5	0.0
C2	C1	N1	H1N2	180.0	180.0
C2	C1	N2	HN2	300.0	180.0
C3	C2	C1	C7	169.1	180.1
C1	C2	C3	C4	191.9	180.0
C1	C2	C3	H3	11.9	0.0
C1	C2	C7	C6	168.2	179.7
C1	C2	C7	H7	348.2	0.1
H1N1	N1	C1	N2	180.0	180.1
H1N1	N1	C1	C2	352.5	0.0
C1	N1	H1N1	H1N2	187.5	180.0
H1N2	N1	C1	N2	7.5	0.1
H1N2	N1	C1	C2	180.0	180.0
C1	N1	H1N2	H1N1	171.7	180.0
HN2	N2	C1	C2	300.0	180.0
C1	C2	C3	C7	190.8	179.9
C3	C2	C7	C6	358.7	359.7
C3	C2	C7	H7	178.7	180.0
C4	C3	C2	H3	180.0	179.9
C2	C3	C4	C5	359.9	0.0
C2	C3	C4	H4	179.9	180.0
C1	C2	C7	C3	169.5	180.1
C7	C2	C3	C4	1.2	0.0
C7	C2	C3	H3	181.1	180.1
C5	C6	C7	C2	0.4	0.6
C2	C7	C6	H6	180.4	180.0
C6	C7	C2	H7	180.0	179.6
C4	C3	C2	C7	1.2	0.0
C2	C3	C4	H3	180.0	180.1
C5	C4	C3	H4	180.0	180.0
C3	C4	C5	N3	191.6	180.0
C3	C4	C5	C6	359.1	0.3
H3	C3	C2	C7	181.1	180.1
C2	C3	H3	C4	180.0	179.9
H3	C3	C4	C5	180.0	179.9
H3	C3	C4	H4	359.9	359.9
C5	C4	C3	H3	180.0	179.9
C3	C4	C5	H4	180.0	180.0
N3	C5	C4	C6	192.5	179.7
C4	C5	N3	C11	163.5	180.0
C4	C5	N3	HA	343.6	0.0
C4	C5	C6	C7	0.7	359.4
C4	C5	C6	H6	180.8	180.0
H4	C4	C3	H3	359.9	359.9
C3	C4	H4	C5	180.0	180.0
H4	C4	C5	N3	11.6	359.9
H4	C4	C5	C6	179.1	180.3
N3	C5	C4	H4	11.6	359.9
C4	C5	N3	C6	167.8	180.3
N3	C5	C6	C7	168.9	179.7
N3	C5	C6	H6	348.9	0.3
C11	N3	C5	HA	180.0	180.0
C5	N3	C11	C22	150.5	155.0
C5	N3	C11	C12	280.4	275.0
C5	N3	C11	H11	36.8	35.0
C2	C7	C6	C5	0.4	0.6
C6	C5	C4	H4	179.1	180.3
C4	C5	C6	N3	191.8	179.7
C6	C5	N3	C11	355.7	359.7
C6	C5	N3	HA	175.7	179.7
C7	C6	C5	H6	180.0	179.4
C5	C6	C7	H7	180.4	180.3
C11	N3	C5	C6	355.7	359.7
C5	N3	C11	HA	180.0	180.0
C22	C11	N3	C12	230.1	240.0
C22	C11	N3	H11	113.7	120.0
N3	C11	C22	N24	51.8	180.0
N3	C11	C22	O23	223.0	360.0
C12	C11	N3	H11	243.6	240.0
N3	C11	C12	C17	308.1	140.0
N3	C11	C12	C16	133.1	320.0
HA	N3	C5	C6	175.7	179.7
C5	N3	HA	C11	180.0	180.0
HA	N3	C11	C22	330.5	335.0
HA	N3	C11	C12	100.4	95.0
HA	N3	C11	H11	216.8	215.0
C22	C11	N3	HA	330.5	335.0
N3	C11	C22	C12	133.8	120.0
N3	C11	C22	H11	246.3	240.0
C12	C11	C22	H11	112.5	120.0
C22	C11	C12	C17	79.1	260.0
C22	C11	C12	C16	264.1	80.1
N24	C22	C11	O23	188.8	180.1
C11	C22	N24	C25	169.1	180.0
C11	C22	N24	H24	349.1	0.0
C12	C11	N3	HA	100.4	95.0
N3	C11	C12	C22	228.9	240.0
N3	C11	C12	H11	116.4	120.0
C22	C11	C12	H11	247.5	240.1
C12	C11	C22	N24	278.0	60.0
C12	C11	C22	O23	89.2	239.9
C17	C12	C11	C16	175.0	180.0
C11	C12	C17	C19	184.9	179.8
C11	C12	C17	H17	4.9	0.0
C11	C12	C16	C18	176.1	180.0
C11	C12	C16	H16	356.1	360.0
H11	C11	N3	HA	216.8	215.0
N3	C11	H11	C22	118.9	120.0
N3	C11	H11	C12	235.0	240.0
C22	C11	H11	C12	116.1	119.9
H11	C11	C22	N24	165.4	300.0
H11	C11	C22	O23	336.7	120.0
H11	C11	C12	C17	191.7	19.9
H11	C11	C12	C16	16.6	200.0
N24	C22	C11	C12	278.0	60.0
N24	C22	C11	H11	165.4	300.0
C11	C22	N24	O23	171.9	179.9
C25	N24	C22	H24	180.0	180.0
C22	N24	C25	C26	255.0	180.0
C22	N24	C25	H251	129.7	300.0
C22	N24	C25	H252	20.3	60.0
O23	C22	C11	C12	89.2	239.9
O23	C22	C11	H11	336.7	120.0
C11	C22	O23	N24	188.3	180.1
O23	C22	N24	C25	357.2	0.0
O23	C22	N24	H24	177.2	180.1
C25	N24	C22	O23	357.2	0.0
C22	N24	C25	H24	180.0	180.0
C26	C25	N24	H251	125.3	239.9
C26	C25	N24	H252	234.7	120.0
N24	C25	C26	C27	273.4	90.0
N24	C25	C26	C31	64.0	269.8
H251	C25	N24	H252	109.5	240.0
H24	N24	C22	O23	177.2	180.1
C22	N24	H24	C25	180.0	180.0
H24	N24	C25	C26	75.0	360.0
H24	N24	C25	H251	309.7	120.0
H24	N24	C25	H252	200.3	240.0
C26	C25	N24	H24	75.0	360.0
N24	C25	C26	H251	234.8	120.1
N24	C25	C26	H252	125.3	240.0
H251	C25	C26	H252	250.5	119.9
C27	C26	C25	C31	209.4	180.2
C25	C26	C27	C28	146.1	180.0
C25	C26	C27	H27	326.1	0.0
C25	C26	C31	C30	215.3	179.8
C25	C26	C31	H31	35.2	0.2
H251	C25	N24	H24	309.7	120.0
N24	C25	H251	C26	124.6	239.9
N24	C25	H251	H252	242.3	120.0
C26	C25	H251	H252	117.7	240.1
H251	C25	C26	C27	38.6	329.9
H251	C25	C26	C31	189.2	149.7
H252	C25	N24	H24	200.3	240.0
N24	C25	H252	C26	235.4	120.0
N24	C25	H252	H251	117.7	240.0
C26	C25	H252	H251	242.3	120.0
H252	C25	C26	C27	148.1	210.0
H252	C25	C26	C31	298.7	29.8
C27	C26	C25	H251	38.6	329.9
C27	C26	C25	H252	148.1	210.0
C25	C26	C27	C31	150.1	179.8
C27	C26	C31	C30	4.3	359.6
C27	C26	C31	H31	184.3	180.0
C28	C27	C26	H27	180.0	180.0
C26	C27	C28	C29	0.6	0.0
C26	C27	C28	H28	180.6	180.0
C31	C26	C25	H251	189.2	149.7
C31	C26	C25	H252	298.7	29.8
C25	C26	C31	C27	210.9	180.2
C31	C26	C27	C28	356.0	0.3
C31	C26	C27	H27	176.1	180.2
C29	C30	C31	C26	358.7	0.4
C26	C31	C30	H30	178.6	180.3
C30	C31	C26	H31	180.0	179.6
C28	C27	C26	C31	356.0	0.3
C26	C27	C28	H27	180.0	180.0
C29	C28	C27	H28	180.0	180.0
C27	C28	C29	C30	2.4	359.9
C27	C28	C29	H29	182.4	179.9
H27	C27	C26	C31	176.1	180.2
C26	C27	H27	C28	180.0	180.0
H27	C27	C28	C29	180.6	180.0
H27	C27	C28	H28	0.6	360.0
C29	C28	C27	H27	180.6	180.0
C27	C28	C29	H28	180.0	180.0
C30	C29	C28	H29	180.0	180.0
C28	C29	C30	C31	358.0	359.9
C28	C29	C30	H30	178.0	179.9
H28	C28	C27	H27	0.6	360.0
C27	C28	H28	C29	180.0	180.0
H28	C28	C29	C30	182.4	180.0
H28	C28	C29	H29	2.4	360.0
C26	C31	C30	C29	358.7	0.4
C30	C29	C28	H28	182.4	180.0
C28	C29	C30	H29	180.0	180.0
C31	C30	C29	H30	180.0	179.9
C29	C30	C31	H31	178.7	180.0
H29	C29	C28	H28	2.4	360.0
C28	C29	H29	C30	180.0	180.0
H29	C29	C30	C31	178.0	179.9
H29	C29	C30	H30	358.0	360.0
C26	C31	C30	H31	180.0	180.4
C31	C30	C29	H29	178.0	179.9
C29	C30	C31	H30	180.0	180.1
H30	C30	C29	H29	358.0	360.0
C29	C30	H30	C31	180.0	179.9
H30	C30	C31	H31	358.7	359.9
C26	C31	H31	C30	180.0	179.6
H31	C31	C30	H30	358.7	359.9
C17	C12	C11	H11	191.7	19.9
C11	C12	C17	C16	185.1	180.0
C17	C12	C16	C18	0.7	0.0
C17	C12	C16	H16	180.7	180.0
C19	C17	C12	H17	180.0	179.8
C12	C17	C19	O2	173.8	180.0
C12	C17	C19	C20	359.2	0.5
C16	C12	C11	H11	16.6	200.0
C11	C12	C16	C17	175.4	180.0
C16	C12	C17	C19	359.8	359.7
C16	C12	C17	H17	179.8	180.0
C20	C18	C16	C12	359.8	360.0
C18	C16	C12	H16	180.0	180.0
C12	C16	C18	H18	179.8	180.0
C19	C17	C12	C16	359.8	359.7
C12	C17	C19	H17	180.0	180.2
O2	C19	C17	C20	174.6	179.4
C17	C19	O2	C24	4.6	0.0
C17	C19	C20	O3	191.3	179.7
C17	C19	C20	C18	1.3	359.5
H17	C17	C12	C16	179.8	180.0
C12	C17	H17	C19	180.0	179.8
H17	C17	C19	O2	353.8	359.7
H17	C17	C19	C20	179.2	180.3
O2	C19	C17	H17	353.8	359.7
C17	C19	O2	C20	185.2	180.6
O2	C19	C20	O3	16.3	0.3
O2	C19	C20	C18	186.4	180.0
C19	O2	C24	H241	180.0	180.0
C19	O2	C24	H242	54.7	299.9
C19	O2	C24	H243	305.3	59.9
C20	C19	C17	H17	179.2	180.3
C17	C19	C20	O2	174.9	179.4
C20	C19	O2	C24	179.5	179.5
O3	C20	C19	C18	189.9	180.2
C19	C20	O3	C32	166.8	179.7
C19	C20	C18	C16	359.2	0.3
C19	C20	C18	H18	179.2	180.2
C24	O2	C19	C20	179.5	179.5
H241	C24	O2	H242	125.2	240.1
H241	C24	O2	H243	234.7	120.1
H242	C24	O2	H243	109.5	240.0
O2	C24	H241	H242	234.8	119.9
O2	C24	H241	H243	125.3	239.9
H242	C24	H241	H243	250.5	120.0
O2	C24	H242	H241	131.5	240.0
O2	C24	H242	H243	245.7	120.0
H241	C24	H242	H243	114.3	239.9
O2	C24	H243	H241	228.5	120.1
O2	C24	H243	H242	114.2	240.1
H241	C24	H243	H242	245.7	120.0
C19	C20	O3	C18	169.7	179.8
O3	C20	C18	C16	168.8	180.1
O3	C20	C18	H18	348.8	0.0
C20	O3	C32	H321	180.0	60.0
C20	O3	C32	H322	54.7	180.0
C20	O3	C32	H323	305.3	300.1
C12	C16	C18	C20	359.8	360.0
C19	C20	C18	O3	190.4	180.2
C18	C20	O3	C32	357.1	359.9
C20	C18	C16	H16	179.8	180.0
C16	C18	C20	H18	180.0	180.0
C32	O3	C20	C18	357.1	359.9
H321	C32	O3	H322	125.3	240.0
H321	C32	O3	H323	234.8	120.0
H322	C32	O3	H323	109.5	240.0
O3	C32	H321	H322	234.7	120.0
O3	C32	H321	H323	125.3	240.0
H322	C32	H321	H323	250.5	120.0
O3	C32	H322	H321	133.8	240.0
O3	C32	H322	H323	246.9	120.1
H321	C32	H322	H323	113.1	240.0
O3	C32	H323	H321	226.2	120.0
O3	C32	H323	H322	113.1	240.0
H321	C32	H323	H322	246.9	120.0
C12	C16	C18	H16	180.0	180.0
C20	C18	C16	H18	180.0	180.0
C12	C16	H16	C18	180.0	180.0
H16	C16	C18	H18	359.8	0.0
C20	C18	H18	C16	180.0	180.0
H18	C18	C16	H16	359.8	0.0
C2	C7	C6	H7	180.0	180.4
C5	C6	C7	H6	180.0	180.6
C5	C6	H6	C7	180.0	179.4
H6	C6	C7	H7	0.4	359.6
C2	C7	H7	C6	180.0	179.6
H7	C7	C6	H6	0.4	359.6