Atom Nomenclature for 37T

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 37T

Atom Name (V3) Atom Name (V2)
O6 O6
C6 C6
N1 N1
C5 C5
N7 N7
C13 C13
C8 C8
N9 N9
C4 C4
N3 N3
C12 C12
C2 C2
O2 O2
HN1 HN1
H131 1H13
H132 2H13
H133 3H13
H8 H8
H121 1H12
H122 2H12
H123 3H12