Atom Nomenclature for 37K

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 37K

Atom Name (V3) Atom Name (V2)
CBE C1
CAW C2
OBM O1
CAX C3
CBF C4
NCE N1
CBG C5
CAY C6
OBN O2
CBS C7
CAO C8
CAK C9
CAJ C10
CAL C11
CBT C12
CCB C13
CBC C14
CAZ C15
CBR C16
CAP C17
CAM C18
CAN C19
CBV C20
OBH O3
CAA C21
CBW C22
OBI O4
CAB C23
OBO O5
C C24
O O6
CA C25
CB C26
CAU C27
CAV C28
CBD C29
N N2
CBQ C30
OAG O7
CCD C31
CCA C32
CBA C33
CAT C34
CAS C35
CAH C36
CAI C37
CBU C38
CAR C39
CAQ C40
CBX C41
OBJ O8
CAC C42
CBZ C43
OBL O9
CAE C44
CBY C45
OBK O10
CAD C46
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H51 H51
H53 H53
H54 H54
H55 H55
H56 H56
H57 H57
H58 H58
H59 H59
H60 H60
H61 H61
H62 H62
H63 H63