Atom Nomenclature for 37G

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 37G

Atom Name (V3) Atom Name (V2)
C13 C13
C15 C15
C17 C17
C20 C20
C21 C21
C22 C22
C24 C24
C26 C26
C01 C01
C02 C02
C03 C03
C04 C04
O05 O05
N06 N06
C07 C07
C08 C08
C09 C09
O10 O10
C11 C11
C12 C12
C14 C14
C16 C16
C18 C18
C19 C19
N23 N23
C25 C25
O27 O27
O28 O28
C29 C29
C30 C30
CL31 CL31
C32 C32
C33 C33
C34 C34
C35 C35
CL36 CL36
H13 H13
H15 H15
H22 H22
H01 H01
H01A H01A
H01B H01B
H02 H02
H03 H03
H03A H03A
H03B H03B
H09 H09
H09A H09A
H12 H12
H16 H16
H18 H18
H19 H19
HN23 HN23
H25 H25
H32 H32
H33 H33
H34 H34
H221 H221