PDB Chemical Component 35G

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 35G

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.450 1.480
P O2P 1.505 1.610
P O5' 1.496 1.623
P O3' 1.479 1.632
O2P HOP2 0.950 0.967
O5' C5' 1.427 1.448
C5' C4' 1.520 1.516
C5' H5'1 1.101 1.090
C5' H5'2 1.100 1.089
C4' O4' 1.454 1.425
C4' C3' 1.522 1.552
C4' H4' 1.100 1.090
O4' C1' 1.438 1.449
C3' O3' 1.394 1.431
C3' C2' 1.528 1.534
C3' H3' 1.100 1.090
C2' O2' 1.418 1.429
C2' C1' 1.532 1.550
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.488 1.465
C1' H1' 1.100 1.090
N9 C8 1.386 1.365
N9 C4 1.394 1.369
C8 N7 1.314 1.301
C8 H8 1.080 1.080
N7 C5 1.395 1.355
C5 C6 1.443 1.415
C5 C4 1.404 1.400
C6 O6 1.249 1.219
C6 N1 1.401 1.352
N1 C2 1.395 1.362
N1 HN1 1.000 0.970
C2 N2 1.352 1.373
C2 N3 1.332 1.315
N2 HN21 1.000 0.970
N2 HN22 1.000 0.970
N3 C4 1.367 1.337

Bond Angles for 35G

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 107.1 109.9
O1P P O5' 111.0 109.9
O1P P O3' 99.0 110.0
O2P P O5' 111.8 110.0
O2P P O3' 110.2 110.0
P O2P HOP2 109.5 114.0
O5' P O3' 116.6 106.9
P O5' C5' 120.0 120.2
P O3' C3' 106.6 116.6
O5' C5' C4' 106.4 106.7
O5' C5' H5'1 110.5 110.0
O5' C5' H5'2 110.5 110.0
C4' C5' H5'1 110.5 110.0
C4' C5' H5'2 110.5 110.0
C5' C4' O4' 115.4 116.6
C5' C4' C3' 111.3 109.1
C5' C4' H4' 101.7 109.6
H5'1 C5' H5'2 108.4 110.1
O4' C4' C3' 100.4 103.0
O4' C4' H4' 112.3 109.5
C4' O4' C1' 107.4 105.5
C3' C4' H4' 116.4 108.8
C4' C3' O3' 108.3 106.2
C4' C3' C2' 103.7 101.0
C4' C3' H3' 114.6 111.4
O4' C1' C2' 107.7 107.1
O4' C1' N9 113.7 109.9
O4' C1' H1' 111.7 109.9
O3' C3' C2' 111.5 114.6
O3' C3' H3' 107.2 111.1
C2' C3' H3' 111.6 111.9
C3' C2' O2' 111.7 110.6
C3' C2' C1' 101.7 103.3
C3' C2' H2' 113.8 110.7
O2' C2' C1' 111.3 110.6
O2' C2' H2' 104.6 110.6
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 114.1 110.8
C2' C1' N9 118.6 109.9
C2' C1' H1' 105.9 109.9
N9 C1' H1' 98.6 110.1
C1' N9 C8 136.6 126.3
C1' N9 C4 119.4 126.2
C8 N9 C4 103.9 107.5
N9 C8 N7 115.0 109.8
N9 C8 H8 122.5 125.1
N9 C4 C5 107.3 106.1
N9 C4 N3 124.7 134.2
N7 C8 H8 122.5 125.1
C8 N7 C5 104.5 109.3
N7 C5 C6 131.5 134.1
N7 C5 C4 109.2 107.3
C6 C5 C4 118.9 118.6
C5 C6 O6 131.4 120.9
C5 C6 N1 111.1 118.3
C5 C4 N3 128.0 119.7
O6 C6 N1 117.5 120.8
C6 N1 C2 125.4 120.4
C6 N1 HN1 117.3 119.8
C2 N1 HN1 117.3 119.8
N1 C2 N2 118.4 119.1
N1 C2 N3 123.9 121.9
N2 C2 N3 117.7 119.0
C2 N2 HN21 120.0 119.9
C2 N2 HN22 120.0 120.0
C2 N3 C4 112.3 121.1
HN21 N2 HN22 120.0 120.0

Torsion Angles for 35G

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O5' 122.4 121.3
O2P P O1P O3' 245.5 238.7
O1P P O2P HOP2 0.0 300.0
O5' P O1P O3' 123.1 117.5
O1P P O5' C5' 291.1 206.6
O1P P O3' C3' 124.4 157.3
O1P P O2P O5' 238.1 238.8
O1P P O2P O3' 106.7 121.3
O5' P O2P O3' 228.6 242.5
O2P P O5' C5' 171.5 85.4
O2P P O3' C3' 236.5 278.5
O1P P O5' O2P 119.6 121.2
O1P P O5' O3' 247.7 240.6
O2P P O5' O3' 128.1 119.4
O5' P O2P HOP2 121.9 61.3
O5' P O3' C3' 5.4 37.9
P O5' C5' C4' 331.7 49.7
P O5' C5' H5'1 91.7 169.0
P O5' C5' H5'2 211.7 290.5
O1P P O3' O2P 247.9 238.8
O1P P O3' O5' 119.0 119.3
O2P P O3' O5' 231.1 240.6
O3' P O2P HOP2 253.3 178.8
O3' P O5' C5' 43.4 326.0
C4' C3' O3' P 301.1 302.7
P O3' C3' C2' 187.7 192.1
P O3' C3' H3' 65.2 64.1
HOP2 O2P P O5' 121.9 61.3
HOP2 O2P P O3' 253.3 178.8
C5' O5' P O3' 43.4 326.0
C4' C5' O5' H5'1 240.0 240.7
C4' C5' O5' H5'2 120.0 119.3
O5' C5' C4' O4' 220.8 176.9
O5' C5' C4' C3' 334.4 292.8
O5' C5' C4' H4' 99.0 51.8
H5'1 C5' O5' H5'2 240.0 238.5
O5' C5' C4' H5'1 120.0 119.3
O5' C5' C4' H5'2 240.0 240.7
H5'1 C5' C4' H5'2 120.0 121.4
O4' C4' C5' C3' 246.5 244.0
O4' C4' C5' H4' 121.9 125.0
C5' C4' O4' C1' 159.3 163.0
C3' C4' C5' H4' 235.4 241.0
C5' C4' C3' O3' 75.7 72.6
C5' C4' C3' C2' 194.2 192.5
C5' C4' C3' H3' 316.1 311.5
O5' C5' H5'1 C4' 242.5 242.7
O5' C5' H5'1 H5'2 121.3 121.4
C4' C5' H5'1 H5'2 238.7 238.7
H5'1 C5' C4' O4' 100.8 57.5
H5'1 C5' C4' C3' 214.4 173.5
H5'1 C5' C4' H4' 339.0 292.5
O5' C5' H5'2 C4' 117.5 117.3
O5' C5' H5'2 H5'1 238.7 238.6
C4' C5' H5'2 H5'1 121.3 121.3
H5'2 C5' C4' O4' 340.8 296.2
H5'2 C5' C4' C3' 94.4 52.2
H5'2 C5' C4' H4' 219.0 171.1
O4' C4' C5' H5'1 100.8 57.5
O4' C4' C5' H5'2 340.8 296.2
C5' C4' O4' C3' 119.7 119.3
C5' C4' O4' H4' 244.0 234.9
C3' C4' O4' H4' 124.3 115.6
O4' C4' C3' O3' 198.4 197.0
O4' C4' C3' C2' 316.9 316.9
O4' C4' C3' H3' 78.8 75.9
C4' O4' C1' C2' 338.9 333.2
C4' O4' C1' N9 205.3 213.9
C4' O4' C1' H1' 94.7 92.6
P O3' C3' C4' 301.1 302.7
C3' C4' C5' H5'1 214.4 173.5
C3' C4' C5' H5'2 94.4 52.2
C5' C4' C3' O4' 237.3 235.6
C5' C4' C3' H4' 115.9 119.5
O4' C4' C3' H4' 238.5 243.9
C3' C4' O4' C1' 39.6 43.7
O3' C3' C4' C2' 241.5 240.1
O3' C3' C4' H3' 119.6 121.1
C2' C3' C4' H3' 238.1 241.0
C4' C3' C2' O2' 271.6 267.4
C4' C3' C2' C1' 30.4 25.8
C4' C3' C2' H2' 153.5 144.4
H4' C4' C5' H5'1 339.0 292.5
H4' C4' C5' H5'2 219.0 171.1
C5' C4' H4' O4' 124.0 129.0
C5' C4' H4' C3' 238.9 240.9
O4' C4' H4' C3' 114.9 111.8
H4' C4' O4' C1' 275.3 288.1
H4' C4' C3' O3' 319.9 313.1
H4' C4' C3' C2' 78.4 73.1
H4' C4' C3' H3' 200.3 192.0
C1' O4' C4' C3' 39.6 43.7
C1' O4' C4' H4' 275.3 288.1
C3' C2' C1' O4' 353.4 358.8
O2' C2' C1' O4' 112.4 117.2
O4' C1' C2' H2' 230.5 240.3
C2' C1' O4' N9 133.6 119.3
C2' C1' O4' H1' 244.1 240.7
N9 C1' O4' H1' 110.5 121.3
O4' C1' N9 C8 48.0 23.5
O4' C1' N9 C4 232.5 203.3
O3' C3' C4' H4' 319.9 313.1
C4' C3' O3' C2' 113.4 110.6
C4' C3' O3' H3' 235.9 238.7
C2' C3' O3' H3' 122.4 128.1
O3' C3' C2' O2' 27.9 21.1
O3' C3' C2' C1' 146.7 139.5
O3' C3' C2' H2' 269.8 258.1
C2' C3' C4' H4' 78.4 73.1
C4' C3' C2' O3' 243.7 246.3
C4' C3' C2' H3' 123.8 118.6
O4' C1' C2' C3' 353.4 358.8
O3' C3' C2' H3' 240.2 232.3
O2' C2' C3' C1' 241.2 241.6
O2' C2' C3' H2' 118.1 122.9
C3' C2' O2' HO2' 180.0 180.0
C1' C2' C3' H2' 236.8 241.3
C3' C2' C1' N9 124.3 118.1
C3' C2' C1' H1' 233.7 239.5
H3' C3' C4' H4' 200.3 192.0
C4' C3' H3' O3' 120.2 118.2
C4' C3' H3' C2' 242.6 247.8
O3' C3' H3' C2' 122.3 129.5
H3' C3' C2' O2' 147.8 148.7
H3' C3' C2' C1' 266.5 267.1
H3' C3' C2' H2' 29.7 25.8
O4' C1' C2' O2' 112.4 117.2
O2' C2' C3' H3' 147.8 148.7
C3' C2' O2' C1' 112.9 113.8
C3' C2' O2' H2' 236.5 237.0
C1' C2' O2' H2' 123.7 123.2
O2' C2' C1' N9 243.3 236.6
O2' C2' C1' H1' 352.7 357.9
O4' C1' C2' N9 229.1 240.7
O4' C1' C2' H1' 119.6 119.3
C1' C2' C3' H3' 266.5 267.1
C3' C2' C1' O2' 241.0 241.6
C3' C2' C1' H2' 122.9 118.5
O2' C2' C1' H2' 241.9 236.9
C1' C2' O2' HO2' 67.1 66.1
N9 C1' C2' H1' 250.6 238.7
C2' C1' N9 C8 279.8 265.9
C2' C1' N9 C4 104.3 85.6
H2' C2' C3' H3' 29.7 25.8
C3' C2' H2' O2' 122.1 123.0
C3' C2' H2' C1' 243.9 246.0
O2' C2' H2' C1' 121.9 123.1
H2' C2' O2' HO2' 303.4 302.9
H2' C2' C1' N9 1.4 359.6
H2' C2' C1' H1' 110.8 120.9
HO2' O2' C2' C1' 67.1 66.1
HO2' O2' C2' H2' 303.4 302.9
O4' C1' N9 C2' 128.2 117.6
O4' C1' N9 H1' 241.6 238.8
N9 C1' C2' H2' 1.4 359.6
C2' C1' N9 H1' 113.4 121.2
C8 N9 C1' C4 175.5 180.2
C1' N9 C8 N7 184.7 180.0
C1' N9 C8 H8 4.7 0.0
C1' N9 C4 C5 178.1 179.9
C1' N9 C4 N3 356.7 0.7
O4' C1' H1' C2' 243.0 242.4
O4' C1' H1' N9 119.9 121.2
H1' C1' C2' H2' 110.8 120.9
C2' C1' H1' N9 236.8 238.8
H1' C1' N9 C8 166.4 144.7
H1' C1' N9 C4 350.8 324.4
C8 N9 C1' H1' 166.4 144.7
C1' N9 C8 C4 184.0 179.8
C8 N9 C4 C5 1.3 359.7
C8 N9 C4 N3 179.8 180.5
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 357.7 0.0
C4 N9 C1' H1' 350.8 324.4
C1' N9 C4 C8 176.8 180.2
C4 N9 C8 N7 0.7 0.2
C4 N9 C8 H8 180.7 180.2
N7 C5 C4 N9 357.3 0.3
C6 C5 C4 N9 183.8 180.2
C5 C4 N9 N3 181.5 179.2
C2 N3 C4 N9 177.6 179.7
N7 C8 N9 C4 0.7 0.2
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 175.4 180.0
C8 N7 C5 C4 3.0 359.8
H8 C8 N9 C4 180.7 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 177.7 180.0
N9 C4 C5 N7 357.3 0.3
C5 N7 C8 H8 177.7 180.0
C6 C5 N7 C4 172.3 180.2
N7 C5 C6 O6 5.2 0.0
N7 C5 C6 N1 182.7 180.0
N7 C5 C4 N3 178.8 179.7
N9 C4 C5 C6 183.8 180.2
N7 C5 C6 C4 188.3 179.8
C6 C5 C4 N3 5.4 359.5
O6 C6 C5 N1 182.5 180.0
C5 C6 N1 C2 6.0 360.0
C5 C6 N1 HN1 186.0 180.0
N9 C4 C5 N3 178.5 180.7
N7 C5 C4 C6 173.4 180.2
C4 C5 C6 O6 177.0 180.2
C4 C5 C6 N1 354.5 0.2
C2 N3 C4 C5 355.9 0.6
O6 C6 C5 C4 177.0 180.2
C5 C6 O6 N1 177.4 180.0
O6 C6 N1 C2 183.9 180.0
O6 C6 N1 HN1 3.9 0.0
N1 C6 C5 C4 354.5 0.2
C5 C6 N1 O6 182.1 180.0
C2 N1 C6 HN1 180.0 180.0
C6 N1 C2 N2 176.1 180.1
C6 N1 C2 N3 354.4 0.1
C6 N1 C2 HN1 180.0 180.0
N2 C2 N1 N3 181.7 180.0
N1 C2 N2 HN21 178.4 359.9
N1 C2 N2 HN22 358.4 180.0
N1 C2 N3 C4 3.9 359.7
C6 N1 HN1 C2 180.0 180.0
HN1 N1 C2 N2 356.0 0.0
HN1 N1 C2 N3 174.3 180.1
N2 C2 N1 HN1 356.0 0.0
N1 C2 N2 N3 178.4 180.0
N2 C2 N3 C4 182.2 179.7
HN21 N2 C2 HN22 180.0 179.9
N9 C4 N3 C2 177.6 179.7
C5 C4 N3 C2 355.9 0.6
N3 C2 N1 HN1 174.3 180.1
N1 C2 N3 N2 181.7 180.0
N3 C2 N2 HN21 0.0 179.9
N3 C2 N2 HN22 180.0 0.0
HN21 N2 C2 N3 0.0 179.9
C2 N2 HN21 HN22 180.0 180.1
HN22 N2 C2 N3 180.0 0.0
C2 N2 HN22 HN21 180.0 179.9
N9 C4 N3 C5 181.8 179.1