PDB Chemical Component 35D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 35D
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C14 |
C15 |
1.416 |
1.393 |
C14 |
C13 |
1.392 |
1.362 |
C15 |
C16 |
1.430 |
1.362 |
C13 |
C12 |
1.447 |
1.405 |
C16 |
C17 |
1.405 |
1.405 |
C12 |
C17 |
1.408 |
1.417 |
C12 |
N11 |
1.410 |
1.338 |
C17 |
N18 |
1.433 |
1.339 |
N11 |
C10 |
1.375 |
1.312 |
N18 |
C19 |
1.340 |
1.317 |
C10 |
C19 |
1.474 |
1.404 |
C10 |
C07 |
1.540 |
1.507 |
C08 |
C07 |
1.489 |
1.531 |
C08 |
C09 |
1.482 |
1.528 |
C19 |
O20 |
1.427 |
1.356 |
C07 |
C06 |
1.483 |
1.531 |
C09 |
N04 |
1.440 |
1.469 |
C22 |
C21 |
1.463 |
1.539 |
C22 |
N23 |
1.457 |
1.480 |
O20 |
C21 |
1.440 |
1.430 |
C01 |
C02 |
1.466 |
1.507 |
C21 |
C24 |
1.466 |
1.540 |
C06 |
C05 |
1.481 |
1.532 |
N04 |
C02 |
1.440 |
1.348 |
N04 |
C05 |
1.450 |
1.468 |
C02 |
O03 |
1.192 |
1.213 |
N23 |
C24 |
1.459 |
1.480 |
N23 |
C25 |
1.439 |
1.387 |
N34 |
C25 |
1.314 |
1.317 |
N34 |
C33 |
1.379 |
1.338 |
C32 |
C33 |
1.443 |
1.405 |
C32 |
C31 |
1.391 |
1.362 |
C25 |
C26 |
1.417 |
1.403 |
C33 |
C28 |
1.374 |
1.417 |
C31 |
C30 |
1.414 |
1.392 |
C26 |
C27 |
1.388 |
1.361 |
C28 |
C27 |
1.415 |
1.410 |
C28 |
C29 |
1.432 |
1.404 |
C30 |
C29 |
1.414 |
1.362 |
C01 |
H1 |
1.100 |
1.090 |
C01 |
H2 |
1.100 |
1.090 |
C01 |
H3 |
1.100 |
1.089 |
C05 |
H4 |
1.100 |
1.090 |
C05 |
H5 |
1.100 |
1.090 |
C06 |
H6 |
1.101 |
1.090 |
C06 |
H7 |
1.100 |
1.090 |
C07 |
H8 |
1.100 |
1.089 |
C08 |
H9 |
1.100 |
1.090 |
C08 |
H10 |
1.100 |
1.090 |
C09 |
H11 |
1.100 |
1.090 |
C09 |
H12 |
1.100 |
1.090 |
C13 |
H13 |
1.080 |
1.080 |
C14 |
H14 |
1.080 |
1.080 |
C15 |
H15 |
1.080 |
1.080 |
C16 |
H16 |
1.080 |
1.080 |
C21 |
H17 |
1.100 |
1.090 |
C22 |
H18 |
1.100 |
1.090 |
C22 |
H19 |
1.100 |
1.090 |
C24 |
H20 |
1.100 |
1.090 |
C24 |
H21 |
1.100 |
1.090 |
C26 |
H22 |
1.080 |
1.080 |
C27 |
H23 |
1.080 |
1.081 |
C29 |
H24 |
1.080 |
1.080 |
C30 |
H25 |
1.080 |
1.081 |
C31 |
H26 |
1.081 |
1.080 |
C32 |
H27 |
1.080 |
1.080 |
Bond Angles for 35D
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C14 |
C15 |
C16 |
119.9 |
120.9 |
C15 |
C14 |
H14 |
119.9 |
119.6 |
C14 |
C15 |
H15 |
120.0 |
119.5 |
C14 |
C13 |
H13 |
120.0 |
120.2 |
C15 |
C16 |
C17 |
120.0 |
119.7 |
C16 |
C15 |
H15 |
120.0 |
119.6 |
C15 |
C16 |
H16 |
120.0 |
120.2 |
C13 |
C12 |
C17 |
119.7 |
119.3 |
C12 |
C17 |
C16 |
120.2 |
119.4 |
C16 |
C17 |
N18 |
118.7 |
121.0 |
C17 |
C16 |
H16 |
120.0 |
120.1 |
C12 |
C17 |
N18 |
121.1 |
119.6 |
C17 |
N18 |
C19 |
120.5 |
119.7 |
N11 |
C10 |
C19 |
121.6 |
120.6 |
C10 |
C19 |
N18 |
118.4 |
120.6 |
N18 |
C19 |
O20 |
120.3 |
119.7 |
C10 |
C19 |
O20 |
121.3 |
119.7 |
C10 |
C07 |
H8 |
106.1 |
109.5 |
C08 |
C07 |
H8 |
106.7 |
109.5 |
C09 |
C08 |
H9 |
109.1 |
109.6 |
C09 |
C08 |
H10 |
109.1 |
109.4 |
C08 |
C09 |
H11 |
108.9 |
109.5 |
C08 |
C09 |
H12 |
108.9 |
109.6 |
C19 |
O20 |
C21 |
113.4 |
117.0 |
C07 |
C06 |
H6 |
109.0 |
109.4 |
C07 |
C06 |
H7 |
109.0 |
109.5 |
C22 |
C21 |
C24 |
89.4 |
86.3 |
C22 |
C21 |
H17 |
114.3 |
113.8 |
C22 |
N23 |
C24 |
89.9 |
90.7 |
C22 |
N23 |
C25 |
158.2 |
111.0 |
N23 |
C22 |
H18 |
114.1 |
113.7 |
N23 |
C22 |
H19 |
114.1 |
113.7 |
O20 |
C21 |
C24 |
109.1 |
113.7 |
O20 |
C21 |
H17 |
114.8 |
113.0 |
C01 |
C02 |
O03 |
120.5 |
120.1 |
C02 |
C01 |
H1 |
109.5 |
109.5 |
C02 |
C01 |
H2 |
109.5 |
109.4 |
C02 |
C01 |
H3 |
109.5 |
109.5 |
C21 |
C24 |
N23 |
89.8 |
86.2 |
C24 |
C21 |
H17 |
114.3 |
113.7 |
C21 |
C24 |
H20 |
114.1 |
113.8 |
C21 |
C24 |
H21 |
114.1 |
113.8 |
C06 |
C05 |
H4 |
108.8 |
109.6 |
C06 |
C05 |
H5 |
108.8 |
109.7 |
N04 |
C05 |
H4 |
108.9 |
109.6 |
N04 |
C05 |
H5 |
108.8 |
109.6 |
C24 |
N23 |
C25 |
111.3 |
110.9 |
N23 |
C24 |
H20 |
114.1 |
113.7 |
N23 |
C24 |
H21 |
114.1 |
113.8 |
N23 |
C25 |
C26 |
121.8 |
119.2 |
C33 |
C32 |
H27 |
120.3 |
120.1 |
C32 |
C31 |
H26 |
120.1 |
119.5 |
C25 |
C26 |
C27 |
118.6 |
119.9 |
C25 |
C26 |
H22 |
120.7 |
120.0 |
C31 |
C30 |
H25 |
119.6 |
119.5 |
C27 |
C26 |
H22 |
120.7 |
120.1 |
C26 |
C27 |
H23 |
120.3 |
120.8 |
C28 |
C27 |
H23 |
120.3 |
120.8 |
C28 |
C29 |
H24 |
120.2 |
120.2 |
C30 |
C29 |
H24 |
120.2 |
120.2 |
H1 |
C01 |
H2 |
109.4 |
109.4 |
H1 |
C01 |
H3 |
109.4 |
109.5 |
H2 |
C01 |
H3 |
109.5 |
109.5 |
H4 |
C05 |
H5 |
109.5 |
109.6 |
H6 |
C06 |
H7 |
109.5 |
109.5 |
H9 |
C08 |
H10 |
109.5 |
109.5 |
H11 |
C09 |
H12 |
109.5 |
109.7 |
H18 |
C22 |
H19 |
109.5 |
113.0 |
H20 |
C24 |
H21 |
109.5 |
113.0 |
Torsion Angles for 35D
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C15 |
C14 |
C13 |
H13 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
C17 |
359.9 |
360.0 |
C16 |
C15 |
C14 |
H15 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
H16 |
179.9 |
180.0 |
C14 |
C13 |
C12 |
C17 |
360.0 |
360.0 |
C16 |
C15 |
C14 |
H14 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
H15 |
180.0 |
180.0 |
C12 |
C17 |
C16 |
C15 |
0.1 |
0.0 |
C15 |
C16 |
C17 |
N18 |
180.0 |
180.0 |
C17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
C13 |
C12 |
C17 |
C16 |
360.0 |
360.0 |
C13 |
C12 |
C17 |
N18 |
180.1 |
180.0 |
C17 |
C16 |
C15 |
H15 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
H16 |
180.0 |
180.0 |
C12 |
C17 |
C16 |
N18 |
180.1 |
180.0 |
C16 |
C17 |
N18 |
C19 |
180.1 |
180.0 |
C15 |
C16 |
C17 |
C12 |
0.1 |
0.0 |
C16 |
C17 |
C12 |
N18 |
179.9 |
180.0 |
C12 |
C17 |
C16 |
H16 |
180.1 |
180.0 |
C12 |
C17 |
N18 |
C19 |
360.0 |
0.0 |
C12 |
N11 |
C10 |
C19 |
359.6 |
360.0 |
C12 |
C17 |
N18 |
C16 |
179.9 |
180.0 |
N18 |
C17 |
C16 |
H16 |
360.0 |
0.0 |
C10 |
C19 |
N18 |
C17 |
359.8 |
0.0 |
C17 |
N18 |
C19 |
O20 |
180.6 |
180.3 |
N11 |
C10 |
C19 |
N18 |
0.4 |
360.0 |
N11 |
C10 |
C19 |
O20 |
179.7 |
179.7 |
N11 |
C10 |
C07 |
H8 |
223.2 |
180.3 |
C10 |
C19 |
N18 |
O20 |
179.3 |
179.7 |
N18 |
C19 |
O20 |
C21 |
337.9 |
359.7 |
C17 |
N18 |
C19 |
C10 |
359.8 |
0.0 |
N18 |
C19 |
C10 |
O20 |
180.7 |
180.3 |
C19 |
C10 |
C07 |
H8 |
43.8 |
360.0 |
C10 |
C19 |
O20 |
C21 |
158.6 |
180.0 |
C08 |
C07 |
C10 |
H8 |
115.4 |
120.0 |
C10 |
C07 |
C06 |
H6 |
299.6 |
58.7 |
C10 |
C07 |
C06 |
H7 |
59.1 |
298.6 |
C10 |
C07 |
C08 |
H8 |
245.0 |
240.0 |
C08 |
C07 |
C06 |
H6 |
66.4 |
178.6 |
C08 |
C07 |
C06 |
H7 |
185.9 |
58.6 |
C09 |
C08 |
C07 |
H8 |
298.0 |
301.2 |
H9 |
C08 |
C09 |
H10 |
119.5 |
120.1 |
H11 |
C09 |
C08 |
H12 |
240.7 |
120.4 |
C10 |
C19 |
O20 |
N18 |
180.8 |
180.3 |
C19 |
O20 |
C21 |
C24 |
180.4 |
210.0 |
C19 |
O20 |
C21 |
H17 |
310.2 |
341.5 |
C07 |
C06 |
C05 |
H4 |
171.2 |
294.8 |
C07 |
C06 |
C05 |
H5 |
290.4 |
174.5 |
H6 |
C06 |
C07 |
H7 |
240.5 |
120.0 |
C09 |
N04 |
C05 |
H4 |
188.8 |
66.4 |
C09 |
N04 |
C05 |
H5 |
69.5 |
186.7 |
O20 |
C21 |
C22 |
C24 |
110.4 |
114.3 |
O20 |
C21 |
C22 |
H17 |
227.0 |
228.7 |
C22 |
C21 |
C24 |
N23 |
6.9 |
23.7 |
C24 |
C21 |
C22 |
H17 |
116.5 |
114.3 |
C22 |
C21 |
C24 |
H20 |
123.4 |
138.0 |
C22 |
C21 |
C24 |
H21 |
250.3 |
269.4 |
N23 |
C22 |
C21 |
C24 |
353.1 |
336.3 |
N23 |
C22 |
C21 |
H17 |
236.6 |
221.9 |
C21 |
C24 |
N23 |
C22 |
353.1 |
335.3 |
C24 |
N23 |
C22 |
C25 |
192.0 |
247.2 |
C22 |
N23 |
C24 |
H20 |
236.6 |
221.0 |
C22 |
N23 |
C24 |
H21 |
109.6 |
89.6 |
C22 |
N23 |
C25 |
C26 |
197.9 |
180.0 |
H18 |
C22 |
N23 |
H19 |
126.9 |
131.3 |
C22 |
C21 |
O20 |
C24 |
262.5 |
263.3 |
C22 |
C21 |
O20 |
H17 |
132.8 |
131.7 |
O20 |
C21 |
C24 |
N23 |
253.4 |
269.4 |
C24 |
C21 |
O20 |
H17 |
230.3 |
228.5 |
O20 |
C21 |
C24 |
H20 |
9.9 |
23.6 |
O20 |
C21 |
C24 |
H21 |
136.9 |
155.0 |
H1 |
C01 |
C02 |
H2 |
240.0 |
240.1 |
H1 |
C01 |
C02 |
H3 |
120.0 |
120.0 |
H2 |
C01 |
C02 |
H3 |
240.0 |
239.9 |
C22 |
C21 |
C24 |
H17 |
243.5 |
245.5 |
C22 |
N23 |
C24 |
C21 |
353.1 |
335.3 |
O20 |
C21 |
C24 |
H17 |
130.0 |
131.2 |
C21 |
C24 |
N23 |
C25 |
177.9 |
222.4 |
N23 |
C24 |
C21 |
H20 |
243.5 |
245.7 |
N23 |
C24 |
C21 |
H21 |
116.5 |
114.4 |
H20 |
C24 |
C21 |
H21 |
233.0 |
228.6 |
N04 |
C05 |
C06 |
H4 |
239.6 |
119.8 |
N04 |
C05 |
C06 |
H5 |
120.4 |
240.1 |
H4 |
C05 |
C06 |
H5 |
240.8 |
120.3 |
N04 |
C02 |
C01 |
H1 |
180.0 |
180.0 |
N04 |
C02 |
C01 |
H2 |
300.0 |
299.9 |
N04 |
C02 |
C01 |
H3 |
60.0 |
60.0 |
C06 |
C05 |
N04 |
H4 |
120.4 |
240.2 |
C06 |
C05 |
N04 |
H5 |
239.6 |
119.9 |
H4 |
C05 |
N04 |
H5 |
119.3 |
239.7 |
O03 |
C02 |
C01 |
H1 |
0.0 |
0.1 |
O03 |
C02 |
C01 |
H2 |
120.0 |
120.0 |
O03 |
C02 |
C01 |
H3 |
240.0 |
240.1 |
C22 |
N23 |
C24 |
C25 |
175.2 |
112.9 |
C24 |
N23 |
C22 |
H18 |
250.3 |
270.3 |
C24 |
N23 |
C22 |
H19 |
123.5 |
139.1 |
N23 |
C24 |
C21 |
H17 |
123.4 |
138.2 |
C21 |
C24 |
N23 |
H20 |
116.5 |
114.3 |
C21 |
C24 |
N23 |
H21 |
243.5 |
245.7 |
C24 |
N23 |
C25 |
C26 |
5.0 |
279.3 |
H20 |
C24 |
N23 |
H21 |
127.0 |
131.3 |
C22 |
N23 |
C25 |
C24 |
192.9 |
260.7 |
C25 |
N23 |
C22 |
H18 |
58.3 |
23.2 |
C25 |
N23 |
C22 |
H19 |
291.5 |
251.9 |
C25 |
N23 |
C24 |
H20 |
61.3 |
108.1 |
C25 |
N23 |
C24 |
H21 |
294.4 |
336.8 |
N23 |
C25 |
C26 |
C27 |
180.1 |
180.0 |
N23 |
C25 |
C26 |
H22 |
0.1 |
360.0 |
N34 |
C25 |
C26 |
H22 |
179.9 |
180.2 |
N34 |
C33 |
C32 |
H27 |
359.8 |
0.3 |
C33 |
C32 |
C31 |
H26 |
180.1 |
180.0 |
C32 |
C31 |
C30 |
H25 |
179.9 |
180.0 |
C27 |
C26 |
C25 |
H22 |
180.0 |
180.0 |
C25 |
C26 |
C27 |
H23 |
180.0 |
180.0 |
C33 |
C28 |
C27 |
H23 |
180.0 |
180.0 |
C33 |
C28 |
C29 |
H24 |
180.0 |
179.9 |
C31 |
C30 |
C29 |
H24 |
180.0 |
180.1 |
C25 |
C26 |
C27 |
H22 |
180.0 |
180.0 |
C28 |
C27 |
C26 |
H23 |
180.0 |
180.0 |
C28 |
C27 |
C26 |
H22 |
180.0 |
180.0 |
C26 |
C27 |
C28 |
H23 |
180.0 |
180.0 |
C29 |
C28 |
C27 |
H23 |
360.0 |
0.0 |
C30 |
C29 |
C28 |
H24 |
180.0 |
180.1 |
C28 |
C29 |
C30 |
H24 |
180.0 |
179.9 |
H1 |
C01 |
C02 |
O03 |
0.0 |
0.1 |
C02 |
C01 |
H1 |
H2 |
120.0 |
119.9 |
C02 |
C01 |
H1 |
H3 |
240.0 |
239.9 |
H2 |
C01 |
H1 |
H3 |
120.0 |
120.0 |
H2 |
C01 |
C02 |
O03 |
120.0 |
120.0 |
C02 |
C01 |
H2 |
H1 |
240.0 |
240.1 |
C02 |
C01 |
H2 |
H3 |
120.0 |
120.1 |
H1 |
C01 |
H2 |
H3 |
240.0 |
240.0 |
H3 |
C01 |
C02 |
O03 |
240.0 |
240.1 |
C02 |
C01 |
H3 |
H1 |
120.0 |
120.0 |
C02 |
C01 |
H3 |
H2 |
240.0 |
240.0 |
H1 |
C01 |
H3 |
H2 |
120.0 |
120.0 |
C06 |
C05 |
H4 |
H5 |
118.8 |
239.7 |
N04 |
C05 |
H4 |
H5 |
241.1 |
120.3 |
C06 |
C05 |
H5 |
H4 |
241.2 |
120.3 |
N04 |
C05 |
H5 |
H4 |
118.9 |
239.7 |
C07 |
C06 |
H6 |
H7 |
119.1 |
240.0 |
H6 |
C06 |
C05 |
H4 |
50.9 |
54.7 |
H6 |
C06 |
C05 |
H5 |
170.1 |
294.4 |
C07 |
C06 |
H7 |
H6 |
240.8 |
120.0 |
H7 |
C06 |
C05 |
H4 |
291.4 |
174.9 |
H7 |
C06 |
C05 |
H5 |
50.7 |
54.6 |
H8 |
C07 |
C06 |
H6 |
182.8 |
298.7 |
H8 |
C07 |
C06 |
H7 |
302.3 |
178.7 |
H9 |
C08 |
C07 |
H8 |
58.3 |
61.3 |
C09 |
C08 |
H9 |
H10 |
240.7 |
240.0 |
H9 |
C08 |
C09 |
H11 |
308.1 |
65.6 |
H9 |
C08 |
C09 |
H12 |
67.4 |
305.2 |
H10 |
C08 |
C07 |
H8 |
177.8 |
181.4 |
C09 |
C08 |
H10 |
H9 |
119.3 |
120.1 |
H10 |
C08 |
C09 |
H11 |
188.5 |
305.5 |
H10 |
C08 |
C09 |
H12 |
307.9 |
185.1 |
H11 |
C09 |
C08 |
H9 |
308.1 |
65.6 |
H11 |
C09 |
C08 |
H10 |
188.5 |
305.5 |
C08 |
C09 |
H11 |
H12 |
119.0 |
239.7 |
H12 |
C09 |
C08 |
H9 |
67.4 |
305.2 |
H12 |
C09 |
C08 |
H10 |
307.9 |
185.1 |
C08 |
C09 |
H12 |
H11 |
241.0 |
120.3 |
H13 |
C13 |
C12 |
C17 |
180.0 |
180.0 |
H14 |
C14 |
C15 |
C16 |
180.0 |
180.0 |
H14 |
C14 |
C15 |
H15 |
0.0 |
360.0 |
H14 |
C14 |
C13 |
H13 |
360.0 |
360.0 |
C14 |
C15 |
H15 |
C16 |
180.0 |
180.0 |
H15 |
C15 |
C14 |
H14 |
0.0 |
360.0 |
H15 |
C15 |
C16 |
C17 |
180.0 |
180.0 |
H15 |
C15 |
C16 |
H16 |
359.9 |
0.0 |
C15 |
C16 |
H16 |
C17 |
180.0 |
180.0 |
H16 |
C16 |
C15 |
H15 |
359.9 |
0.0 |
H16 |
C16 |
C17 |
N18 |
360.0 |
0.0 |
C22 |
C21 |
H17 |
C24 |
101.0 |
96.8 |
O20 |
C21 |
H17 |
C24 |
232.9 |
228.5 |
H17 |
C21 |
C24 |
N23 |
123.4 |
138.2 |
H17 |
C21 |
C24 |
H20 |
239.9 |
252.5 |
H17 |
C21 |
C24 |
H21 |
6.9 |
23.8 |
H18 |
C22 |
C21 |
C24 |
109.7 |
90.6 |
H18 |
C22 |
C21 |
H17 |
353.2 |
336.2 |
H18 |
C22 |
N23 |
C24 |
250.3 |
270.3 |
H18 |
C22 |
N23 |
C25 |
58.3 |
23.2 |
N23 |
C22 |
H18 |
H19 |
230.8 |
228.4 |
H19 |
C22 |
C21 |
C24 |
236.6 |
222.0 |
H19 |
C22 |
C21 |
H17 |
120.1 |
107.6 |
H19 |
C22 |
N23 |
C24 |
123.5 |
139.1 |
H19 |
C22 |
N23 |
C25 |
291.5 |
251.9 |
N23 |
C22 |
H19 |
H18 |
129.2 |
131.6 |
C21 |
C24 |
H20 |
N23 |
258.6 |
263.5 |
H20 |
C24 |
C21 |
H17 |
239.9 |
252.5 |
C21 |
C24 |
H20 |
H21 |
129.3 |
131.7 |
H20 |
C24 |
N23 |
C25 |
61.3 |
108.1 |
N23 |
C24 |
H20 |
H21 |
230.7 |
228.3 |
C21 |
C24 |
H21 |
N23 |
101.3 |
96.6 |
H21 |
C24 |
C21 |
H17 |
6.9 |
23.8 |
C21 |
C24 |
H21 |
H20 |
230.7 |
228.3 |
H21 |
C24 |
N23 |
C25 |
294.4 |
336.8 |
N23 |
C24 |
H21 |
H20 |
129.3 |
131.7 |
C25 |
C26 |
H22 |
C27 |
180.0 |
180.0 |
H22 |
C26 |
C27 |
H23 |
0.0 |
0.0 |
H23 |
C27 |
C26 |
H22 |
0.0 |
0.0 |
H25 |
C30 |
C29 |
H24 |
0.0 |
0.1 |
H26 |
C31 |
C30 |
H25 |
359.9 |
0.0 |
H27 |
C32 |
C31 |
H26 |
0.1 |
360.0 |