PDB Chemical Component 357

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 357

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 C3 1.429 1.412
C2 O8 1.282 1.221
C2 N1 1.357 1.347
C3 C4 1.437 1.368
C3 N1' 1.434 1.400
C4 C5 1.441 1.403
C4 C7' 1.546 1.507
C5 C10 1.547 1.507
C5 C6 1.435 1.352
C10 C11 1.538 1.530
C10 H101 1.115 1.090
C10 H102 1.115 1.090
C11 H111 1.115 1.089
C11 H112 1.115 1.090
C11 H113 1.115 1.090
C1' C7' 1.551 1.507
C1' C6B 1.411 1.382
C1' C2B 1.434 1.382
C7' H7'1 1.115 1.090
C7' H7'2 1.115 1.089
C6 C7 1.522 1.508
C6 N1 1.368 1.359
C7 H71 1.115 1.089
C7 H72 1.115 1.090
C7 H73 1.115 1.090
N1 HN1 1.020 0.970
N1' C6' 1.463 1.465
N1' C2' 1.500 1.466
C6' H6'1 1.115 1.090
C6' H6'2 1.115 1.090
C6' H6'3 1.115 1.089
C2' C3' 1.545 1.530
C2' H2'1 1.114 1.089
C2' H2'2 1.115 1.089
C3' O4' 1.320 1.429
C3' H3'1 1.115 1.090
C3' H3'2 1.115 1.090
O4' C5' 1.320 1.430
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.089
C5' H5'3 1.115 1.090
C6B C5B 1.417 1.382
C6B H6' 1.103 1.080
C5B C4' 1.417 1.383
C5B H5' 1.103 1.080
C4' C3B 1.418 1.382
C4' H4' 1.103 1.079
C3B C8' 1.519 1.507
C3B C2B 1.423 1.383
C8' H8'1 1.115 1.090
C8' H8'2 1.115 1.090
C8' H8'3 1.115 1.090
C2B H2' 1.103 1.080

Bond Angles for 357

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 C2 O8 120.9 120.0
C3 C2 N1 120.2 120.0
C2 C3 C4 118.7 119.2
C2 C3 N1' 121.5 120.4
O8 C2 N1 118.9 120.0
C2 N1 C6 123.0 120.7
C2 N1 HN1 118.1 119.6
C4 C3 N1' 119.8 120.4
C3 C4 C5 119.7 119.2
C3 C4 C7' 118.3 120.4
C3 N1' C6' 115.8 120.0
C3 N1' C2' 117.7 120.0
C5 C4 C7' 121.9 120.4
C4 C5 C10 121.3 119.9
C4 C5 C6 117.8 120.0
C4 C7' C1' 113.9 109.5
C4 C7' H7'1 110.6 109.4
C4 C7' H7'2 110.6 109.4
C10 C5 C6 120.8 120.0
C5 C10 C11 112.0 109.5
C5 C10 H101 111.3 109.5
C5 C10 H102 111.3 109.5
C5 C6 C7 121.9 119.6
C5 C6 N1 120.5 120.9
C11 C10 H101 111.2 109.5
C11 C10 H102 111.3 109.5
C10 C11 H111 111.3 109.5
C10 C11 H112 112.0 109.4
C10 C11 H113 111.3 109.5
H101 C10 H102 99.1 109.5
H111 C11 H112 111.3 109.5
H111 C11 H113 99.0 109.5
H112 C11 H113 111.3 109.5
C7' C1' C6B 118.1 120.0
C7' C1' C2B 123.1 120.0
C1' C7' H7'1 110.6 109.5
C1' C7' H7'2 110.6 109.5
C6B C1' C2B 118.8 120.0
C1' C6B C5B 121.2 120.0
C1' C6B H6' 119.2 120.0
C1' C2B C3B 120.1 120.0
C1' C2B H2' 120.3 120.0
H7'1 C7' H7'2 99.7 109.5
C7 C6 N1 117.6 119.6
C6 C7 H71 107.8 109.5
C6 C7 H72 121.9 109.4
C6 C7 H73 107.7 109.5
C6 N1 HN1 118.9 119.6
H71 C7 H72 107.8 109.5
H71 C7 H73 102.1 109.5
H72 C7 H73 107.8 109.4
C6' N1' C2' 104.7 120.0
N1' C6' H6'1 109.9 109.4
N1' C6' H6'2 115.8 109.5
N1' C6' H6'3 109.9 109.5
N1' C2' C3' 111.4 109.5
N1' C2' H2'1 111.5 109.4
N1' C2' H2'2 111.5 109.5
H6'1 C6' H6'2 109.9 109.5
H6'1 C6' H6'3 100.3 109.4
H6'2 C6' H6'3 109.9 109.5
C3' C2' H2'1 111.5 109.5
C3' C2' H2'2 111.5 109.5
C2' C3' O4' 109.8 109.4
C2' C3' H3'1 112.1 109.5
C2' C3' H3'2 112.1 109.5
H2'1 C2' H2'2 98.9 109.5
O4' C3' H3'1 112.1 109.5
O4' C3' H3'2 112.1 109.5
C3' O4' C5' 130.4 106.8
H3'1 C3' H3'2 98.3 109.5
O4' C5' H5'1 104.9 109.4
O4' C5' H5'2 130.5 109.5
O4' C5' H5'3 104.9 109.5
H5'1 C5' H5'2 104.9 109.5
H5'1 C5' H5'3 104.2 109.5
H5'2 C5' H5'3 104.9 109.5
C5B C6B H6' 119.6 120.0
C6B C5B C4' 119.8 120.0
C6B C5B H5' 120.1 120.0
C4' C5B H5' 120.1 119.9
C5B C4' C3B 120.0 120.0
C5B C4' H4' 120.0 120.0
C3B C4' H4' 120.1 120.0
C4' C3B C8' 119.8 120.0
C4' C3B C2B 120.1 120.0
C8' C3B C2B 120.1 120.0
C3B C8' H8'1 108.5 109.5
C3B C8' H8'2 119.9 109.4
C3B C8' H8'3 108.5 109.4
C3B C2B H2' 119.6 120.0
H8'1 C8' H8'2 108.5 109.5
H8'1 C8' H8'3 101.5 109.5
H8'2 C8' H8'3 108.5 109.5

Torsion Angles for 357

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O8 C2 C3 N1 180.9 180.0
C3 C2 N1 C6 0.9 360.0
C3 C2 N1 HN1 180.9 180.0
C4 C3 C2 N1' 178.9 179.8
C2 C3 C4 C5 1.4 0.5
C2 C3 C4 C7' 180.3 180.0
C2 C3 N1' C6' 284.5 66.2
C2 C3 N1' C2' 49.5 246.3
C3 C2 O8 N1 179.1 180.0
O8 C2 C3 C4 179.9 179.7
O8 C2 C3 N1' 1.0 359.9
O8 C2 N1 C6 180.0 180.0
O8 C2 N1 HN1 0.0 0.1
C3 C2 N1 O8 180.9 180.0
N1 C2 C3 C4 359.0 359.8
N1 C2 C3 N1' 180.1 180.0
C5 C6 N1 C2 358.9 0.0
C7 C6 N1 C2 179.8 180.0
C6 N1 C2 HN1 180.0 180.0
C4 C3 C2 O8 179.9 179.7
C4 C3 C2 N1 359.0 359.8
C2 C3 C4 N1' 181.1 180.2
C4 C3 N1' C6' 105.6 246.5
C4 C3 N1' C2' 230.6 66.5
C5 C4 C3 C7' 181.1 180.5
C3 C4 C5 C10 179.1 179.8
C3 C4 C5 C6 358.4 359.5
C3 C4 C7' C1' 105.2 93.1
C3 C4 C7' H7'1 340.0 213.1
C3 C4 C7' H7'2 230.5 333.1
N1' C3 C2 O8 1.0 359.9
N1' C3 C2 N1 180.1 180.0
C2 C3 N1' C4 178.9 179.8
N1' C3 C4 C5 180.3 180.3
N1' C3 C4 C7' 359.3 359.8
C6' N1' C3 C2' 235.0 180.0
C3 N1' C6' H6'1 54.7 5.4
C3 N1' C6' H6'2 180.0 125.4
C3 N1' C6' H6'3 305.3 245.5
C3 N1' C2' C3' 63.0 95.5
C3 N1' C2' H2'1 297.7 215.5
C3 N1' C2' H2'2 188.3 335.5
C5 C4 C3 N1' 180.3 180.3
C3 C4 C5 C7' 178.9 179.5
C5 C4 C7' C1' 284.2 272.6
C5 C4 C7' H7'1 158.9 32.6
C5 C4 C7' H7'2 49.4 152.6
C10 C5 C4 C6 180.8 180.3
C4 C5 C10 C11 98.0 274.9
C4 C5 C10 H101 332.7 154.9
C4 C5 C10 H102 223.2 34.9
C4 C5 C6 C7 180.5 180.3
C4 C5 C6 N1 1.5 0.3
C7' C4 C3 N1' 359.3 359.8
C3 C4 C7' C5 181.1 180.5
C7' C4 C5 C10 0.3 0.3
C7' C4 C5 C6 179.5 180.0
C4 C7' C1' C6B 154.0 97.9
C4 C7' C1' C2B 334.1 277.6
C1' C7' C4 H7'1 125.3 240.0
C1' C7' C4 H7'2 234.7 120.0
H7'1 C7' C4 H7'2 109.4 240.0
C10 C5 C4 C7' 0.3 0.3
C4 C5 C10 C6 179.2 179.7
C10 C5 C6 C7 359.7 360.0
C10 C5 C6 N1 180.7 180.0
C11 C10 C5 H101 125.2 120.0
C11 C10 C5 H102 234.7 240.0
C5 C10 C11 H111 54.7 300.0
C5 C10 C11 H112 180.0 60.0
C5 C10 C11 H113 305.2 180.0
H101 C10 C5 H102 109.5 120.0
C2 N1 C6 C5 358.9 0.0
C6 C5 C4 C7' 179.5 180.0
C4 C5 C6 C10 180.8 180.3
C6 C5 C10 C11 278.8 95.2
C6 C5 C10 H101 153.5 335.2
C6 C5 C10 H102 44.0 215.2
C7 C6 C5 N1 179.0 180.0
C5 C6 C7 H71 54.8 90.0
C5 C6 C7 H72 180.0 210.0
C5 C6 C7 H73 305.3 330.0
C5 C6 N1 HN1 178.8 180.0
C11 C10 C5 C6 278.8 95.2
C5 C10 C11 H101 234.7 240.0
C5 C10 C11 H102 125.2 120.0
H101 C10 C11 H102 250.5 240.0
H111 C11 C10 H112 234.7 240.0
H111 C11 C10 H113 109.4 120.0
H112 C11 C10 H113 234.7 240.0
H101 C10 C5 C6 153.5 335.2
C5 C10 H101 C11 125.6 120.0
C5 C10 H101 H102 242.8 240.0
C11 C10 H101 H102 117.2 120.0
H101 C10 C11 H111 180.0 60.0
H101 C10 C11 H112 305.2 180.0
H101 C10 C11 H113 70.5 300.0
H102 C10 C5 C6 44.0 215.2
C5 C10 H102 C11 234.3 240.0
C5 C10 H102 H101 117.2 120.0
C11 C10 H102 H101 242.9 240.0
H102 C10 C11 H111 289.4 180.0
H102 C10 C11 H112 54.7 300.0
H102 C10 C11 H113 180.0 60.0
H111 C11 C10 H101 180.0 60.0
H111 C11 C10 H102 289.4 180.0
C10 C11 H111 H112 125.6 120.0
C10 C11 H111 H113 242.8 240.0
H112 C11 H111 H113 117.2 120.0
H112 C11 C10 H101 305.2 180.0
H112 C11 C10 H102 54.7 300.0
C10 C11 H112 H111 234.7 240.0
C10 C11 H112 H113 125.3 120.0
H111 C11 H112 H113 250.5 240.0
H113 C11 C10 H101 70.5 300.0
H113 C11 C10 H102 180.0 60.0
C10 C11 H113 H111 117.2 120.0
C10 C11 H113 H112 234.3 240.0
H111 C11 H113 H112 117.2 120.0
C4 C7' C1' H7'1 234.7 120.0
C4 C7' C1' H7'2 125.3 240.0
C6B C1' C7' C2B 179.9 180.3
C7' C1' C6B C5B 180.0 180.0
C7' C1' C6B H6' 0.0 359.9
C7' C1' C2B C3B 179.9 179.8
C7' C1' C2B H2' 359.9 0.3
H7'1 C7' C1' H7'2 250.6 120.1
C7' C1' C6B C2B 180.1 179.7
C6B C1' C7' H7'1 279.2 337.9
C6B C1' C7' H7'2 28.7 217.9
C6B C1' C2B C3B 0.0 359.5
C6B C1' C2B H2' 180.0 180.0
C5B C6B C1' H6' 180.0 180.1
C1' C6B C5B C4' 0.1 359.9
C1' C6B C5B H5' 180.1 180.0
C7' C1' C2B C6B 179.9 180.3
C2B C1' C7' H7'1 99.4 157.6
C2B C1' C7' H7'2 208.8 37.6
C2B C1' C6B C5B 359.9 0.3
C2B C1' C6B H6' 179.9 180.3
C4' C3B C2B C1' 0.1 0.5
C8' C3B C2B C1' 179.9 180.3
C3B C2B C1' H2' 180.0 179.5
C4 C7' H7'1 C1' 127.2 240.0
C4 C7' H7'1 H7'2 243.6 119.9
H7'1 C7' C1' C6B 279.2 337.9
H7'1 C7' C1' C2B 99.4 157.6
C1' C7' H7'1 H7'2 116.4 239.9
C4 C7' H7'2 C1' 232.8 120.0
C4 C7' H7'2 H7'1 116.4 240.1
H7'2 C7' C1' C6B 28.7 217.9
H7'2 C7' C1' C2B 208.8 37.6
C1' C7' H7'2 H7'1 243.6 120.1
C2 N1 C6 C7 179.8 180.0
C5 C6 C7 N1 180.9 180.0
C7 C6 N1 HN1 359.8 360.0
H71 C7 C6 H72 234.7 240.0
H71 C7 C6 H73 109.5 120.0
H72 C7 C6 H73 234.7 240.1
C2 N1 C6 HN1 180.0 180.0
C5 C6 N1 C7 179.1 180.0
N1 C6 C7 H71 233.8 270.0
N1 C6 C7 H72 359.1 30.1
N1 C6 C7 H73 124.3 150.0
H71 C7 C6 N1 233.8 270.0
C6 C7 H71 H72 133.3 120.0
C6 C7 H71 H73 246.7 240.0
H72 C7 H71 H73 113.4 120.0
H72 C7 C6 N1 359.1 30.1
C6 C7 H72 H71 234.7 240.0
C6 C7 H72 H73 125.3 120.0
H71 C7 H72 H73 250.5 240.0
H73 C7 C6 N1 124.3 150.0
C6 C7 H73 H71 113.3 120.0
C6 C7 H73 H72 226.7 240.1
H71 C7 H73 H72 113.3 120.1
C2 N1 HN1 C6 180.0 180.0
C3 N1' C6' C2' 131.4 180.0
C6' N1' C2' C3' 193.3 275.5
C6' N1' C2' H2'1 68.0 35.5
C6' N1' C2' H2'2 318.6 155.5
H6'1 C6' N1' H6'2 234.7 240.0
H6'1 C6' N1' H6'3 109.5 119.9
H6'2 C6' N1' H6'3 234.7 239.9
C3 N1' C2' C6' 229.7 180.0
C2' N1' C6' H6'1 283.3 185.4
C2' N1' C6' H6'2 48.6 305.4
C2' N1' C6' H6'3 173.8 65.5
C3' C2' N1' H2'1 125.3 240.0
C3' C2' N1' H2'2 234.7 120.0
N1' C2' C3' O4' 180.3 65.0
N1' C2' C3' H3'1 55.0 185.0
N1' C2' C3' H3'2 305.6 305.0
H2'1 C2' N1' H2'2 109.5 240.0
H6'1 C6' N1' C2' 283.3 185.4
N1' C6' H6'1 H6'2 128.6 120.0
N1' C6' H6'1 H6'3 244.3 240.0
H6'2 C6' H6'1 H6'3 115.7 120.1
H6'2 C6' N1' C2' 48.6 305.4
N1' C6' H6'2 H6'1 234.7 240.0
N1' C6' H6'2 H6'3 125.2 120.1
H6'1 C6' H6'2 H6'3 250.5 240.0
H6'3 C6' N1' C2' 173.8 65.5
N1' C6' H6'3 H6'1 115.7 119.9
N1' C6' H6'3 H6'2 231.4 240.0
H6'1 C6' H6'3 H6'2 115.7 120.0
N1' C2' C3' H2'1 234.7 120.0
N1' C2' C3' H2'2 125.3 240.0
H2'1 C2' C3' H2'2 250.6 120.1
O4' C3' C2' H3'1 125.3 240.0
O4' C3' C2' H3'2 234.7 120.0
C2' C3' O4' C5' 179.8 180.0
H3'1 C3' C2' H3'2 109.4 240.0
N1' C2' H2'1 C3' 125.2 240.0
N1' C2' H2'1 H2'2 242.6 120.0
C3' C2' H2'1 H2'2 117.4 240.0
H2'1 C2' C3' O4' 305.6 305.0
H2'1 C2' C3' H3'1 180.3 65.0
H2'1 C2' C3' H3'2 70.9 185.0
N1' C2' H2'2 C3' 234.8 120.0
N1' C2' H2'2 H2'1 117.4 240.0
C3' C2' H2'2 H2'1 242.6 120.0
H2'2 C2' C3' O4' 55.0 185.0
H2'2 C2' C3' H3'1 289.7 305.0
H2'2 C2' C3' H3'2 180.3 65.0
O4' C3' C2' H2'1 305.6 305.0
O4' C3' C2' H2'2 55.0 185.0
C2' C3' O4' H3'1 234.7 120.0
C2' C3' O4' H3'2 125.3 240.0
H3'1 C3' O4' H3'2 250.5 120.0
C3' O4' C5' H5'1 54.7 300.0
C3' O4' C5' H5'2 180.0 60.0
C3' O4' C5' H5'3 305.3 180.0
H3'1 C3' C2' H2'1 180.3 65.0
H3'1 C3' C2' H2'2 289.7 305.0
C2' C3' H3'1 O4' 124.0 240.0
C2' C3' H3'1 H3'2 242.0 120.0
O4' C3' H3'1 H3'2 118.0 240.0
H3'1 C3' O4' C5' 305.0 60.0
H3'2 C3' C2' H2'1 70.9 185.0
H3'2 C3' C2' H2'2 180.3 65.0
C2' C3' H3'2 O4' 236.0 120.0
C2' C3' H3'2 H3'1 118.0 240.0
O4' C3' H3'2 H3'1 242.0 120.0
H3'2 C3' O4' C5' 54.5 300.0
C5' O4' C3' H3'1 305.0 60.0
C5' O4' C3' H3'2 54.5 300.0
H5'1 C5' O4' H5'2 234.8 240.0
H5'1 C5' O4' H5'3 109.5 120.0
H5'2 C5' O4' H5'3 234.7 239.9
O4' C5' H5'1 H5'2 140.0 120.0
O4' C5' H5'1 H5'3 250.0 240.0
H5'2 C5' H5'1 H5'3 110.0 120.1
O4' C5' H5'2 H5'1 234.7 240.1
O4' C5' H5'2 H5'3 125.3 120.1
H5'1 C5' H5'2 H5'3 250.5 240.0
O4' C5' H5'3 H5'1 110.0 119.9
O4' C5' H5'3 H5'2 220.0 240.0
H5'1 C5' H5'3 H5'2 110.0 120.0
C5B C6B C1' C2B 359.9 0.3
C1' C6B C5B H6' 180.0 179.9
C4' C5B C6B H5' 180.0 179.9
C6B C5B C4' C3B 0.1 0.0
C6B C5B C4' H4' 180.1 180.0
H6' C6B C1' C2B 179.9 180.3
C1' C6B H6' C5B 180.0 180.1
H6' C6B C5B C4' 180.0 180.0
H6' C6B C5B H5' 0.0 0.1
C4' C5B C6B H6' 180.0 180.0
C6B C5B C4' H5' 180.0 180.1
C3B C4' C5B H4' 180.0 180.0
C5B C4' C3B C8' 180.0 180.0
C5B C4' C3B C2B 359.8 359.8
H5' C5B C6B H6' 0.0 0.1
C6B C5B H5' C4' 180.0 179.9
H5' C5B C4' C3B 180.1 180.0
H5' C5B C4' H4' 0.1 360.0
C1' C2B C3B C4' 0.1 0.5
C3B C4' C5B H5' 180.1 180.0
C5B C4' C3B H4' 180.0 180.0
C8' C3B C4' C2B 180.2 180.2
C4' C3B C8' H8'1 54.8 90.0
C4' C3B C8' H8'2 180.0 210.0
C4' C3B C8' H8'3 305.3 329.9
C4' C3B C2B H2' 180.1 180.0
H4' C4' C5B H5' 0.1 360.0
C5B C4' H4' C3B 180.0 180.0
H4' C4' C3B C8' 0.0 0.0
H4' C4' C3B C2B 179.8 179.8
C1' C2B C3B C8' 179.9 180.3
C8' C3B C4' H4' 0.0 0.0
C4' C3B C8' C2B 179.8 179.8
C8' C3B C2B H2' 359.9 359.8
H8'1 C8' C3B H8'2 234.7 240.0
H8'1 C8' C3B H8'3 109.5 120.0
H8'2 C8' C3B H8'3 234.8 240.1
C1' C2B C3B H2' 180.0 180.5
C2B C3B C4' H4' 179.8 179.8
C4' C3B C2B C8' 180.2 180.2
C2B C3B C8' H8'1 235.0 270.2
C2B C3B C8' H8'2 0.2 30.2
C2B C3B C8' H8'3 125.5 150.2
H8'1 C8' C3B C2B 235.0 270.2
C3B C8' H8'1 H8'2 131.7 120.0
C3B C8' H8'1 H8'3 245.8 240.0
H8'2 C8' H8'1 H8'3 114.1 120.0
H8'2 C8' C3B C2B 0.2 30.2
C3B C8' H8'2 H8'1 234.7 240.0
C3B C8' H8'2 H8'3 125.3 119.9
H8'1 C8' H8'2 H8'3 250.5 239.9
H8'3 C8' C3B C2B 125.5 150.2
C3B C8' H8'3 H8'1 114.2 120.0
C3B C8' H8'3 H8'2 228.3 240.1
H8'1 C8' H8'3 H8'2 114.2 120.1
C1' C2B H2' C3B 180.0 179.5