Atom Nomenclature for 34R

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 34R

Atom Name (V3) Atom Name (V2)
O30 O30
C16 C16
C15 C15
C14 C14
C13 C13
C10 C10
O11 O11
C12 C12
C07 C07
O08 O08
C09 C09
C06 C06
C05 C05
C04 C04
C03 C03
C32 C32
N33 N33
C34 C34
N35 N35
N36 N36
C02 C02
N01 N01
C31 C31
N17 N17
N18 N18
C19 C19
C22 C22
C40 C40
C38 C38
C37 C37
C23 C23
C21 C21
C20 C20
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28