Atom Nomenclature for 33R

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 33R

Atom Name (V3) Atom Name (V2)
C15 C1
C17 C2
C20 C3
C22 C4
C28 C5
CL19 CL1
CL21 CL2
C01 C6
C02 C7
C03 C8
N04 N1
O05 O1
O06 O2
C07 C9
C08 C10
C09 C11
N10 N2
N11 N3
C12 C12
N13 N4
C14 C13
C16 C14
C18 C15
C23 C16
S24 S1
C25 C17
O26 O3
O27 O4
C29 C18
H171 H1
H221 H2
H281 H3
H011 H4
H021 H5
H082 H6
H081 H7
H111 H8
H161 H9
H231 H10
H1 H11
H291 H12