PDB Chemical Component 33D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 33D

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O1 1.449 1.430
C1 C2 1.527 1.530
C3 C4 1.515 1.530
C3 C5 1.513 1.530
C3 C6 1.527 1.530
C3 C2 1.533 1.530
C1 HC1 1.100 1.090
C1 HC2 1.100 1.090
O1 H1 0.950 0.966
C2 HC3 1.100 1.090
C2 HC4 1.100 1.090
C4 H41 1.100 1.090
C4 H42 1.100 1.090
C4 H43 1.100 1.089
C5 H51 1.100 1.089
C5 H52 1.100 1.090
C5 H53 1.100 1.090
C6 H61 1.100 1.090
C6 H62 1.100 1.090
C6 H63 1.100 1.090

Bond Angles for 33D

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 106.7 109.5
O1 C1 HC1 110.4 109.5
O1 C1 HC2 111.0 109.5
C1 O1 H1 109.5 114.0
C1 C2 C3 123.1 109.4
C2 C1 HC1 110.4 109.5
C2 C1 HC2 111.0 109.5
C1 C2 HC3 105.2 109.5
C1 C2 HC4 102.0 109.5
C5 C3 C4 109.6 109.4
C4 C3 C6 108.5 109.5
C4 C3 C2 113.3 109.5
C3 C4 H41 109.5 109.4
C3 C4 H42 109.5 109.4
C3 C4 H43 109.5 109.5
C5 C3 C6 107.4 109.5
C5 C3 C2 104.3 109.5
C3 C5 H51 109.5 109.5
C3 C5 H52 109.5 109.4
C3 C5 H53 109.4 109.4
C2 C3 C6 113.6 109.5
C3 C6 H61 109.5 109.5
C3 C6 H62 109.5 109.5
C3 C6 H63 109.5 109.4
C3 C2 HC3 105.1 109.5
C3 C2 HC4 102.0 109.5
HC1 C1 HC2 107.3 109.5
HC3 C2 HC4 120.9 109.5
H41 C4 H42 109.5 109.4
H41 C4 H43 109.4 109.5
H42 C4 H43 109.5 109.5
H51 C5 H52 109.5 109.5
H51 C5 H53 109.5 109.5
H52 C5 H53 109.5 109.4
H61 C6 H62 109.5 109.5
H61 C6 H63 109.4 109.5
H62 C6 H63 109.5 109.5

Torsion Angles for 33D

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 C3 143.4 180.0
C2 C1 O1 HC1 240.0 240.0
C2 C1 O1 HC2 121.1 120.0
O1 C1 C2 HC3 263.4 300.0
O1 C1 C2 HC4 30.3 60.0
HC1 C1 O1 HC2 241.1 240.0
O1 C1 C2 HC1 120.0 120.0
O1 C1 C2 HC2 238.9 240.0
C2 C1 O1 H1 327.0 180.0
C4 C3 C2 C1 53.5 60.0
C5 C3 C2 C1 172.5 300.0
C1 C2 C3 C6 289.2 180.0
C3 C2 C1 HC3 240.0 240.0
C3 C2 C1 HC4 113.0 120.0
HC1 C1 C2 HC2 118.9 120.0
HC3 C2 C1 HC4 233.0 240.0
C1 C2 C3 C4 53.5 60.0
C5 C3 C4 C6 117.0 240.0
C5 C3 C4 C2 244.1 120.0
C4 C3 C5 H51 243.8 60.0
C4 C3 C5 H52 3.8 180.0
C4 C3 C5 H53 123.8 299.9
C2 C3 C4 C6 233.0 120.0
C4 C3 C6 H61 260.4 60.0
C4 C3 C6 H62 20.5 180.0
C4 C3 C6 H63 140.4 300.0
C4 C3 C2 HC3 293.5 300.0
C4 C3 C2 HC4 166.5 180.0
H41 C4 C3 H42 240.0 240.1
H41 C4 C3 H43 120.0 120.0
H42 C4 C3 H43 240.0 240.0
C1 C2 C3 C5 172.5 300.0
C4 C3 C5 C6 242.3 120.0
C4 C3 C5 C2 121.5 240.0
C5 C3 C4 H41 253.7 60.1
C5 C3 C4 H42 13.7 180.0
C5 C3 C4 H43 133.7 300.0
C2 C3 C5 C6 120.8 240.0
C5 C3 C6 H61 142.0 179.9
C5 C3 C6 H62 262.1 300.0
C5 C3 C6 H63 22.0 60.0
C5 C3 C2 HC3 52.5 180.0
C5 C3 C2 HC4 285.6 60.0
H51 C5 C3 H52 240.0 240.0
H51 C5 C3 H53 120.0 120.0
H52 C5 C3 H53 240.0 240.1
C5 C3 C6 C4 241.6 120.0
C4 C3 C6 C2 233.1 120.0
C6 C3 C4 H41 136.7 180.0
C6 C3 C4 H42 256.7 299.9
C6 C3 C4 H43 16.7 60.0
C5 C3 C6 C2 114.7 240.0
C6 C3 C5 H51 1.5 300.0
C6 C3 C5 H52 121.5 60.1
C6 C3 C5 H53 241.5 180.0
C6 C3 C2 HC3 169.2 60.0
C6 C3 C2 HC4 42.2 300.0
H61 C6 C3 H62 240.0 240.0
H61 C6 C3 H63 120.0 120.0
H62 C6 C3 H63 240.0 240.0
C3 C2 C1 HC1 23.4 60.0
C3 C2 C1 HC2 264.5 300.0
C1 C2 C3 HC3 120.0 120.0
C1 C2 C3 HC4 247.0 240.0
C5 C3 C2 C4 119.1 240.0
C4 C3 C2 C6 124.3 240.0
C2 C3 C4 H41 9.6 300.0
C2 C3 C4 H42 129.7 60.0
C2 C3 C4 H43 249.7 180.0
C5 C3 C2 C6 243.4 120.0
C2 C3 C5 H51 122.3 180.0
C2 C3 C5 H52 242.3 300.0
C2 C3 C5 H53 2.3 60.0
C2 C3 C6 H61 27.3 300.0
C2 C3 C6 H62 147.3 60.0
C2 C3 C6 H63 267.3 180.0
HC3 C2 C3 HC4 127.0 120.0
O1 C1 HC1 C2 242.3 240.0
O1 C1 HC1 HC2 121.2 120.0
HC1 C1 O1 H1 87.0 300.0
HC1 C1 C2 C3 23.4 60.0
C2 C1 HC1 HC2 238.9 240.0
HC1 C1 C2 HC3 143.4 180.0
HC1 C1 C2 HC4 270.4 300.0
O1 C1 HC2 C2 118.5 120.0
O1 C1 HC2 HC1 239.3 240.0
HC2 C1 O1 H1 205.9 60.0
HC2 C1 C2 C3 264.5 300.0
C2 C1 HC2 HC1 120.8 120.0
HC2 C1 C2 HC3 24.5 60.0
HC2 C1 C2 HC4 151.4 180.0
H1 O1 C1 C2 327.0 180.0
H1 O1 C1 HC1 87.0 300.0
H1 O1 C1 HC2 205.9 60.0
C1 C2 HC3 C3 228.7 240.0
HC3 C2 C1 HC1 143.4 180.0
HC3 C2 C1 HC2 24.5 60.0
C1 C2 HC3 HC4 114.4 120.0
HC3 C2 C3 C6 169.2 60.0
C3 C2 HC3 HC4 245.7 240.0
C1 C2 HC4 C3 128.0 120.0
HC4 C2 C1 HC1 270.4 300.0
HC4 C2 C1 HC2 151.4 180.0
C1 C2 HC4 HC3 244.0 240.0
HC4 C2 C3 C6 42.2 300.0
C3 C2 HC4 HC3 116.0 120.0
H41 C4 C3 C6 136.7 180.0
H41 C4 C3 C2 9.6 300.0
C3 C4 H41 H42 120.0 119.9
C3 C4 H41 H43 240.0 240.0
H42 C4 H41 H43 120.0 120.0
H42 C4 C3 C6 256.7 299.9
H42 C4 C3 C2 129.7 60.0
C3 C4 H42 H41 239.9 240.1
C3 C4 H42 H43 120.0 120.0
H41 C4 H42 H43 240.1 240.0
H43 C4 C3 C6 16.7 60.0
H43 C4 C3 C2 249.7 180.0
C3 C4 H43 H41 120.0 120.0
C3 C4 H43 H42 240.0 240.0
H41 C4 H43 H42 120.0 120.0
H51 C5 C3 C4 243.8 60.0
H51 C5 C3 C6 1.5 300.0
H51 C5 C3 C2 122.3 180.0
C3 C5 H51 H52 120.0 120.0
C3 C5 H51 H53 240.0 240.0
H52 C5 H51 H53 120.0 120.0
H52 C5 C3 C4 3.8 180.0
H52 C5 C3 C6 121.5 60.1
H52 C5 C3 C2 242.3 300.0
C3 C5 H52 H51 240.0 240.0
C3 C5 H52 H53 120.0 119.9
H51 C5 H52 H53 240.0 240.0
H53 C5 C3 C4 123.8 299.9
H53 C5 C3 C6 241.5 180.0
H53 C5 C3 C2 2.3 60.0
C3 C5 H53 H51 120.0 120.0
C3 C5 H53 H52 240.0 240.1
H51 C5 H53 H52 120.0 120.0
C3 C6 H61 H62 120.0 120.0
C3 C6 H61 H63 240.0 240.1
H62 C6 H61 H63 120.0 120.0
C3 C6 H62 H61 240.0 240.0
C3 C6 H62 H63 120.0 120.0
H61 C6 H62 H63 240.0 240.0
C3 C6 H63 H61 120.0 120.0
C3 C6 H63 H62 240.0 240.0
H61 C6 H63 H62 120.0 120.0