PDB Chemical Component 33D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 33D
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.449 |
1.430 |
C1 |
C2 |
1.527 |
1.530 |
C3 |
C4 |
1.515 |
1.530 |
C3 |
C5 |
1.513 |
1.530 |
C3 |
C6 |
1.527 |
1.530 |
C3 |
C2 |
1.533 |
1.530 |
C1 |
HC1 |
1.100 |
1.090 |
C1 |
HC2 |
1.100 |
1.090 |
O1 |
H1 |
0.950 |
0.966 |
C2 |
HC3 |
1.100 |
1.090 |
C2 |
HC4 |
1.100 |
1.090 |
C4 |
H41 |
1.100 |
1.090 |
C4 |
H42 |
1.100 |
1.090 |
C4 |
H43 |
1.100 |
1.089 |
C5 |
H51 |
1.100 |
1.089 |
C5 |
H52 |
1.100 |
1.090 |
C5 |
H53 |
1.100 |
1.090 |
C6 |
H61 |
1.100 |
1.090 |
C6 |
H62 |
1.100 |
1.090 |
C6 |
H63 |
1.100 |
1.090 |
Bond Angles for 33D
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
106.7 |
109.5 |
O1 |
C1 |
HC1 |
110.4 |
109.5 |
O1 |
C1 |
HC2 |
111.0 |
109.5 |
C1 |
O1 |
H1 |
109.5 |
114.0 |
C1 |
C2 |
C3 |
123.1 |
109.4 |
C2 |
C1 |
HC1 |
110.4 |
109.5 |
C2 |
C1 |
HC2 |
111.0 |
109.5 |
C1 |
C2 |
HC3 |
105.2 |
109.5 |
C1 |
C2 |
HC4 |
102.0 |
109.5 |
C5 |
C3 |
C4 |
109.6 |
109.4 |
C4 |
C3 |
C6 |
108.5 |
109.5 |
C4 |
C3 |
C2 |
113.3 |
109.5 |
C3 |
C4 |
H41 |
109.5 |
109.4 |
C3 |
C4 |
H42 |
109.5 |
109.4 |
C3 |
C4 |
H43 |
109.5 |
109.5 |
C5 |
C3 |
C6 |
107.4 |
109.5 |
C5 |
C3 |
C2 |
104.3 |
109.5 |
C3 |
C5 |
H51 |
109.5 |
109.5 |
C3 |
C5 |
H52 |
109.5 |
109.4 |
C3 |
C5 |
H53 |
109.4 |
109.4 |
C2 |
C3 |
C6 |
113.6 |
109.5 |
C3 |
C6 |
H61 |
109.5 |
109.5 |
C3 |
C6 |
H62 |
109.5 |
109.5 |
C3 |
C6 |
H63 |
109.5 |
109.4 |
C3 |
C2 |
HC3 |
105.1 |
109.5 |
C3 |
C2 |
HC4 |
102.0 |
109.5 |
HC1 |
C1 |
HC2 |
107.3 |
109.5 |
HC3 |
C2 |
HC4 |
120.9 |
109.5 |
H41 |
C4 |
H42 |
109.5 |
109.4 |
H41 |
C4 |
H43 |
109.4 |
109.5 |
H42 |
C4 |
H43 |
109.5 |
109.5 |
H51 |
C5 |
H52 |
109.5 |
109.5 |
H51 |
C5 |
H53 |
109.5 |
109.5 |
H52 |
C5 |
H53 |
109.5 |
109.4 |
H61 |
C6 |
H62 |
109.5 |
109.5 |
H61 |
C6 |
H63 |
109.4 |
109.5 |
H62 |
C6 |
H63 |
109.5 |
109.5 |
Torsion Angles for 33D
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
C3 |
143.4 |
180.0 |
C2 |
C1 |
O1 |
HC1 |
240.0 |
240.0 |
C2 |
C1 |
O1 |
HC2 |
121.1 |
120.0 |
O1 |
C1 |
C2 |
HC3 |
263.4 |
300.0 |
O1 |
C1 |
C2 |
HC4 |
30.3 |
60.0 |
HC1 |
C1 |
O1 |
HC2 |
241.1 |
240.0 |
O1 |
C1 |
C2 |
HC1 |
120.0 |
120.0 |
O1 |
C1 |
C2 |
HC2 |
238.9 |
240.0 |
C2 |
C1 |
O1 |
H1 |
327.0 |
180.0 |
C4 |
C3 |
C2 |
C1 |
53.5 |
60.0 |
C5 |
C3 |
C2 |
C1 |
172.5 |
300.0 |
C1 |
C2 |
C3 |
C6 |
289.2 |
180.0 |
C3 |
C2 |
C1 |
HC3 |
240.0 |
240.0 |
C3 |
C2 |
C1 |
HC4 |
113.0 |
120.0 |
HC1 |
C1 |
C2 |
HC2 |
118.9 |
120.0 |
HC3 |
C2 |
C1 |
HC4 |
233.0 |
240.0 |
C1 |
C2 |
C3 |
C4 |
53.5 |
60.0 |
C5 |
C3 |
C4 |
C6 |
117.0 |
240.0 |
C5 |
C3 |
C4 |
C2 |
244.1 |
120.0 |
C4 |
C3 |
C5 |
H51 |
243.8 |
60.0 |
C4 |
C3 |
C5 |
H52 |
3.8 |
180.0 |
C4 |
C3 |
C5 |
H53 |
123.8 |
299.9 |
C2 |
C3 |
C4 |
C6 |
233.0 |
120.0 |
C4 |
C3 |
C6 |
H61 |
260.4 |
60.0 |
C4 |
C3 |
C6 |
H62 |
20.5 |
180.0 |
C4 |
C3 |
C6 |
H63 |
140.4 |
300.0 |
C4 |
C3 |
C2 |
HC3 |
293.5 |
300.0 |
C4 |
C3 |
C2 |
HC4 |
166.5 |
180.0 |
H41 |
C4 |
C3 |
H42 |
240.0 |
240.1 |
H41 |
C4 |
C3 |
H43 |
120.0 |
120.0 |
H42 |
C4 |
C3 |
H43 |
240.0 |
240.0 |
C1 |
C2 |
C3 |
C5 |
172.5 |
300.0 |
C4 |
C3 |
C5 |
C6 |
242.3 |
120.0 |
C4 |
C3 |
C5 |
C2 |
121.5 |
240.0 |
C5 |
C3 |
C4 |
H41 |
253.7 |
60.1 |
C5 |
C3 |
C4 |
H42 |
13.7 |
180.0 |
C5 |
C3 |
C4 |
H43 |
133.7 |
300.0 |
C2 |
C3 |
C5 |
C6 |
120.8 |
240.0 |
C5 |
C3 |
C6 |
H61 |
142.0 |
179.9 |
C5 |
C3 |
C6 |
H62 |
262.1 |
300.0 |
C5 |
C3 |
C6 |
H63 |
22.0 |
60.0 |
C5 |
C3 |
C2 |
HC3 |
52.5 |
180.0 |
C5 |
C3 |
C2 |
HC4 |
285.6 |
60.0 |
H51 |
C5 |
C3 |
H52 |
240.0 |
240.0 |
H51 |
C5 |
C3 |
H53 |
120.0 |
120.0 |
H52 |
C5 |
C3 |
H53 |
240.0 |
240.1 |
C5 |
C3 |
C6 |
C4 |
241.6 |
120.0 |
C4 |
C3 |
C6 |
C2 |
233.1 |
120.0 |
C6 |
C3 |
C4 |
H41 |
136.7 |
180.0 |
C6 |
C3 |
C4 |
H42 |
256.7 |
299.9 |
C6 |
C3 |
C4 |
H43 |
16.7 |
60.0 |
C5 |
C3 |
C6 |
C2 |
114.7 |
240.0 |
C6 |
C3 |
C5 |
H51 |
1.5 |
300.0 |
C6 |
C3 |
C5 |
H52 |
121.5 |
60.1 |
C6 |
C3 |
C5 |
H53 |
241.5 |
180.0 |
C6 |
C3 |
C2 |
HC3 |
169.2 |
60.0 |
C6 |
C3 |
C2 |
HC4 |
42.2 |
300.0 |
H61 |
C6 |
C3 |
H62 |
240.0 |
240.0 |
H61 |
C6 |
C3 |
H63 |
120.0 |
120.0 |
H62 |
C6 |
C3 |
H63 |
240.0 |
240.0 |
C3 |
C2 |
C1 |
HC1 |
23.4 |
60.0 |
C3 |
C2 |
C1 |
HC2 |
264.5 |
300.0 |
C1 |
C2 |
C3 |
HC3 |
120.0 |
120.0 |
C1 |
C2 |
C3 |
HC4 |
247.0 |
240.0 |
C5 |
C3 |
C2 |
C4 |
119.1 |
240.0 |
C4 |
C3 |
C2 |
C6 |
124.3 |
240.0 |
C2 |
C3 |
C4 |
H41 |
9.6 |
300.0 |
C2 |
C3 |
C4 |
H42 |
129.7 |
60.0 |
C2 |
C3 |
C4 |
H43 |
249.7 |
180.0 |
C5 |
C3 |
C2 |
C6 |
243.4 |
120.0 |
C2 |
C3 |
C5 |
H51 |
122.3 |
180.0 |
C2 |
C3 |
C5 |
H52 |
242.3 |
300.0 |
C2 |
C3 |
C5 |
H53 |
2.3 |
60.0 |
C2 |
C3 |
C6 |
H61 |
27.3 |
300.0 |
C2 |
C3 |
C6 |
H62 |
147.3 |
60.0 |
C2 |
C3 |
C6 |
H63 |
267.3 |
180.0 |
HC3 |
C2 |
C3 |
HC4 |
127.0 |
120.0 |
O1 |
C1 |
HC1 |
C2 |
242.3 |
240.0 |
O1 |
C1 |
HC1 |
HC2 |
121.2 |
120.0 |
HC1 |
C1 |
O1 |
H1 |
87.0 |
300.0 |
HC1 |
C1 |
C2 |
C3 |
23.4 |
60.0 |
C2 |
C1 |
HC1 |
HC2 |
238.9 |
240.0 |
HC1 |
C1 |
C2 |
HC3 |
143.4 |
180.0 |
HC1 |
C1 |
C2 |
HC4 |
270.4 |
300.0 |
O1 |
C1 |
HC2 |
C2 |
118.5 |
120.0 |
O1 |
C1 |
HC2 |
HC1 |
239.3 |
240.0 |
HC2 |
C1 |
O1 |
H1 |
205.9 |
60.0 |
HC2 |
C1 |
C2 |
C3 |
264.5 |
300.0 |
C2 |
C1 |
HC2 |
HC1 |
120.8 |
120.0 |
HC2 |
C1 |
C2 |
HC3 |
24.5 |
60.0 |
HC2 |
C1 |
C2 |
HC4 |
151.4 |
180.0 |
H1 |
O1 |
C1 |
C2 |
327.0 |
180.0 |
H1 |
O1 |
C1 |
HC1 |
87.0 |
300.0 |
H1 |
O1 |
C1 |
HC2 |
205.9 |
60.0 |
C1 |
C2 |
HC3 |
C3 |
228.7 |
240.0 |
HC3 |
C2 |
C1 |
HC1 |
143.4 |
180.0 |
HC3 |
C2 |
C1 |
HC2 |
24.5 |
60.0 |
C1 |
C2 |
HC3 |
HC4 |
114.4 |
120.0 |
HC3 |
C2 |
C3 |
C6 |
169.2 |
60.0 |
C3 |
C2 |
HC3 |
HC4 |
245.7 |
240.0 |
C1 |
C2 |
HC4 |
C3 |
128.0 |
120.0 |
HC4 |
C2 |
C1 |
HC1 |
270.4 |
300.0 |
HC4 |
C2 |
C1 |
HC2 |
151.4 |
180.0 |
C1 |
C2 |
HC4 |
HC3 |
244.0 |
240.0 |
HC4 |
C2 |
C3 |
C6 |
42.2 |
300.0 |
C3 |
C2 |
HC4 |
HC3 |
116.0 |
120.0 |
H41 |
C4 |
C3 |
C6 |
136.7 |
180.0 |
H41 |
C4 |
C3 |
C2 |
9.6 |
300.0 |
C3 |
C4 |
H41 |
H42 |
120.0 |
119.9 |
C3 |
C4 |
H41 |
H43 |
240.0 |
240.0 |
H42 |
C4 |
H41 |
H43 |
120.0 |
120.0 |
H42 |
C4 |
C3 |
C6 |
256.7 |
299.9 |
H42 |
C4 |
C3 |
C2 |
129.7 |
60.0 |
C3 |
C4 |
H42 |
H41 |
239.9 |
240.1 |
C3 |
C4 |
H42 |
H43 |
120.0 |
120.0 |
H41 |
C4 |
H42 |
H43 |
240.1 |
240.0 |
H43 |
C4 |
C3 |
C6 |
16.7 |
60.0 |
H43 |
C4 |
C3 |
C2 |
249.7 |
180.0 |
C3 |
C4 |
H43 |
H41 |
120.0 |
120.0 |
C3 |
C4 |
H43 |
H42 |
240.0 |
240.0 |
H41 |
C4 |
H43 |
H42 |
120.0 |
120.0 |
H51 |
C5 |
C3 |
C4 |
243.8 |
60.0 |
H51 |
C5 |
C3 |
C6 |
1.5 |
300.0 |
H51 |
C5 |
C3 |
C2 |
122.3 |
180.0 |
C3 |
C5 |
H51 |
H52 |
120.0 |
120.0 |
C3 |
C5 |
H51 |
H53 |
240.0 |
240.0 |
H52 |
C5 |
H51 |
H53 |
120.0 |
120.0 |
H52 |
C5 |
C3 |
C4 |
3.8 |
180.0 |
H52 |
C5 |
C3 |
C6 |
121.5 |
60.1 |
H52 |
C5 |
C3 |
C2 |
242.3 |
300.0 |
C3 |
C5 |
H52 |
H51 |
240.0 |
240.0 |
C3 |
C5 |
H52 |
H53 |
120.0 |
119.9 |
H51 |
C5 |
H52 |
H53 |
240.0 |
240.0 |
H53 |
C5 |
C3 |
C4 |
123.8 |
299.9 |
H53 |
C5 |
C3 |
C6 |
241.5 |
180.0 |
H53 |
C5 |
C3 |
C2 |
2.3 |
60.0 |
C3 |
C5 |
H53 |
H51 |
120.0 |
120.0 |
C3 |
C5 |
H53 |
H52 |
240.0 |
240.1 |
H51 |
C5 |
H53 |
H52 |
120.0 |
120.0 |
C3 |
C6 |
H61 |
H62 |
120.0 |
120.0 |
C3 |
C6 |
H61 |
H63 |
240.0 |
240.1 |
H62 |
C6 |
H61 |
H63 |
120.0 |
120.0 |
C3 |
C6 |
H62 |
H61 |
240.0 |
240.0 |
C3 |
C6 |
H62 |
H63 |
120.0 |
120.0 |
H61 |
C6 |
H62 |
H63 |
240.0 |
240.0 |
C3 |
C6 |
H63 |
H61 |
120.0 |
120.0 |
C3 |
C6 |
H63 |
H62 |
240.0 |
240.0 |
H61 |
C6 |
H63 |
H62 |
120.0 |
120.0 |