PDB Chemical Component 334
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 334
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.408 |
1.401 |
| C1 |
C6 |
1.424 |
1.391 |
| C1 |
C7 |
1.417 |
1.479 |
| C2 |
C3 |
1.388 |
1.365 |
| C2 |
HC2 |
1.074 |
1.080 |
| C3 |
C4 |
1.369 |
1.390 |
| C3 |
HC3 |
1.078 |
1.080 |
| C4 |
C5 |
1.344 |
1.408 |
| C4 |
N3 |
1.276 |
1.379 |
| C5 |
C6 |
1.405 |
1.395 |
| C5 |
N4 |
1.321 |
1.356 |
| C6 |
HC6 |
1.081 |
1.080 |
| C7 |
N1 |
1.315 |
1.332 |
| C7 |
N2 |
1.316 |
1.332 |
| N1 |
HH11 |
1.009 |
0.970 |
| N1 |
HH12 |
0.999 |
0.970 |
| N2 |
HH21 |
1.009 |
0.970 |
| N2 |
HH22 |
0.995 |
0.970 |
| N3 |
C8 |
1.300 |
1.370 |
| N3 |
HN3 |
0.979 |
0.970 |
| N4 |
C8 |
1.331 |
1.311 |
| C8 |
C1' |
1.418 |
1.478 |
| C1' |
C2' |
1.403 |
1.396 |
| C1' |
C6' |
1.415 |
1.401 |
| C2' |
C3' |
1.405 |
1.379 |
| C2' |
HC2' |
1.081 |
1.079 |
| C3' |
CV' |
1.536 |
1.507 |
| C3' |
C4' |
1.391 |
1.384 |
| CV' |
H32' |
1.082 |
1.090 |
| CV' |
H33' |
1.080 |
1.091 |
| CV' |
H34' |
1.079 |
1.090 |
| C4' |
C5' |
1.398 |
1.383 |
| C4' |
HC4' |
1.081 |
1.080 |
| C5' |
C6' |
1.402 |
1.386 |
| C5' |
BR5' |
1.962 |
1.891 |
| C6' |
O6' |
1.385 |
1.357 |
Bond Angles for 334
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
118.3 |
120.2 |
| C2 |
C1 |
C7 |
119.2 |
119.9 |
| C1 |
C2 |
C3 |
121.3 |
120.5 |
| C1 |
C2 |
HC2 |
120.9 |
119.8 |
| C6 |
C1 |
C7 |
122.5 |
119.9 |
| C1 |
C6 |
C5 |
118.7 |
119.5 |
| C1 |
C6 |
HC6 |
121.3 |
120.3 |
| C1 |
C7 |
N1 |
120.3 |
120.0 |
| C1 |
C7 |
N2 |
119.5 |
120.0 |
| C3 |
C2 |
HC2 |
117.8 |
119.8 |
| C2 |
C3 |
C4 |
118.2 |
120.2 |
| C2 |
C3 |
HC3 |
121.4 |
119.9 |
| C4 |
C3 |
HC3 |
120.4 |
119.9 |
| C3 |
C4 |
C5 |
123.5 |
120.1 |
| C3 |
C4 |
N3 |
130.7 |
133.7 |
| C5 |
C4 |
N3 |
105.8 |
106.2 |
| C4 |
C5 |
C6 |
120.1 |
119.5 |
| C4 |
C5 |
N4 |
112.2 |
107.2 |
| C4 |
N3 |
C8 |
108.2 |
107.3 |
| C4 |
N3 |
HN3 |
128.1 |
126.4 |
| C6 |
C5 |
N4 |
127.8 |
133.3 |
| C5 |
C6 |
HC6 |
120.0 |
120.2 |
| C5 |
N4 |
C8 |
101.2 |
109.5 |
| N1 |
C7 |
N2 |
120.3 |
120.0 |
| C7 |
N1 |
HH11 |
118.6 |
120.0 |
| C7 |
N1 |
HH12 |
125.8 |
120.0 |
| C7 |
N2 |
HH21 |
120.1 |
120.0 |
| C7 |
N2 |
HH22 |
123.3 |
120.1 |
| HH11 |
N1 |
HH12 |
115.5 |
120.0 |
| HH21 |
N2 |
HH22 |
116.6 |
120.0 |
| C8 |
N3 |
HN3 |
123.7 |
126.4 |
| N3 |
C8 |
N4 |
112.6 |
109.8 |
| N3 |
C8 |
C1' |
120.8 |
125.1 |
| N4 |
C8 |
C1' |
126.5 |
125.1 |
| C8 |
C1' |
C2' |
121.3 |
120.2 |
| C8 |
C1' |
C6' |
120.3 |
120.1 |
| C2' |
C1' |
C6' |
118.4 |
119.7 |
| C1' |
C2' |
C3' |
120.4 |
119.9 |
| C1' |
C2' |
HC2' |
120.0 |
120.0 |
| C1' |
C6' |
C5' |
121.2 |
119.7 |
| C1' |
C6' |
O6' |
120.8 |
120.2 |
| C3' |
C2' |
HC2' |
119.7 |
120.1 |
| C2' |
C3' |
CV' |
121.6 |
119.8 |
| C2' |
C3' |
C4' |
120.4 |
120.3 |
| CV' |
C3' |
C4' |
118.0 |
119.8 |
| C3' |
CV' |
H32' |
109.5 |
109.5 |
| C3' |
CV' |
H33' |
110.5 |
109.4 |
| C3' |
CV' |
H34' |
108.9 |
109.5 |
| C3' |
C4' |
C5' |
120.3 |
120.3 |
| C3' |
C4' |
HC4' |
119.2 |
119.9 |
| H32' |
CV' |
H33' |
109.2 |
109.4 |
| H32' |
CV' |
H34' |
109.2 |
109.5 |
| H33' |
CV' |
H34' |
109.5 |
109.5 |
| C5' |
C4' |
HC4' |
120.5 |
119.8 |
| C4' |
C5' |
C6' |
119.4 |
120.1 |
| C4' |
C5' |
BR5' |
120.9 |
119.9 |
| C6' |
C5' |
BR5' |
119.7 |
120.0 |
| C5' |
C6' |
O6' |
118.0 |
120.1 |
Torsion Angles for 334
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
180.0 |
180.0 |
| C2 |
C1 |
C6 |
C5 |
359.6 |
0.0 |
| C2 |
C1 |
C6 |
HC6 |
179.5 |
180.0 |
| C2 |
C1 |
C7 |
N1 |
178.9 |
360.0 |
| C2 |
C1 |
C7 |
N2 |
358.9 |
180.0 |
| C3 |
C2 |
C1 |
HC2 |
180.3 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
360.0 |
360.0 |
| C1 |
C2 |
C3 |
HC3 |
180.2 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
180.0 |
180.0 |
| C6 |
C1 |
C2 |
C3 |
0.4 |
0.0 |
| C6 |
C1 |
C2 |
HC2 |
180.1 |
180.1 |
| C6 |
C1 |
C7 |
N1 |
358.9 |
180.0 |
| C6 |
C1 |
C7 |
N2 |
179.0 |
360.0 |
| C4 |
C5 |
C6 |
C1 |
359.9 |
0.0 |
| C1 |
C6 |
C5 |
N4 |
180.4 |
180.3 |
| C5 |
C6 |
C1 |
HC6 |
180.1 |
180.0 |
| C2 |
C1 |
C7 |
C6 |
180.0 |
180.0 |
| C7 |
C1 |
C2 |
C3 |
180.5 |
180.0 |
| C7 |
C1 |
C2 |
HC2 |
0.2 |
0.0 |
| C7 |
C1 |
C6 |
C5 |
179.6 |
180.0 |
| C7 |
C1 |
C6 |
HC6 |
359.5 |
0.0 |
| N1 |
C7 |
C1 |
N2 |
180.0 |
180.0 |
| C1 |
C7 |
N1 |
HH11 |
358.3 |
360.0 |
| C1 |
C7 |
N1 |
HH12 |
179.9 |
180.0 |
| C1 |
C7 |
N2 |
HH21 |
0.1 |
180.0 |
| C1 |
C7 |
N2 |
HH22 |
178.2 |
360.0 |
| C3 |
C2 |
C1 |
C6 |
0.4 |
0.0 |
| C3 |
C2 |
C1 |
C7 |
180.5 |
180.0 |
| C1 |
C2 |
C3 |
HC2 |
179.7 |
180.0 |
| C4 |
C3 |
C2 |
HC3 |
179.8 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
359.5 |
0.0 |
| C2 |
C3 |
C4 |
N3 |
179.8 |
179.9 |
| HC2 |
C2 |
C1 |
C6 |
180.1 |
180.1 |
| HC2 |
C2 |
C1 |
C7 |
0.2 |
0.0 |
| C1 |
C2 |
HC2 |
C3 |
180.3 |
180.0 |
| HC2 |
C2 |
C3 |
C4 |
180.3 |
179.9 |
| HC2 |
C2 |
C3 |
HC3 |
0.5 |
359.9 |
| C4 |
C3 |
C2 |
HC2 |
180.3 |
179.9 |
| C2 |
C3 |
C4 |
HC3 |
180.2 |
180.0 |
| C5 |
C4 |
C3 |
N3 |
179.7 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
0.5 |
360.0 |
| C3 |
C4 |
C5 |
N4 |
180.1 |
179.7 |
| C3 |
C4 |
N3 |
C8 |
179.8 |
180.0 |
| C3 |
C4 |
N3 |
HN3 |
359.9 |
0.1 |
| HC3 |
C3 |
C2 |
HC2 |
0.5 |
359.9 |
| C2 |
C3 |
HC3 |
C4 |
179.8 |
180.0 |
| HC3 |
C3 |
C4 |
C5 |
179.3 |
180.0 |
| HC3 |
C3 |
C4 |
N3 |
359.6 |
359.9 |
| C1 |
C6 |
C5 |
C4 |
359.9 |
0.0 |
| C5 |
C4 |
C3 |
HC3 |
179.3 |
180.0 |
| C3 |
C4 |
C5 |
N3 |
180.2 |
179.9 |
| C5 |
C4 |
N3 |
C8 |
0.0 |
360.0 |
| C5 |
C4 |
N3 |
HN3 |
180.2 |
180.0 |
| C6 |
C5 |
C4 |
N4 |
180.4 |
180.2 |
| C4 |
C5 |
C6 |
HC6 |
180.0 |
180.0 |
| C4 |
C5 |
N4 |
C8 |
0.1 |
0.4 |
| N3 |
C4 |
C3 |
HC3 |
359.6 |
359.9 |
| C3 |
C4 |
N3 |
C5 |
179.8 |
180.1 |
| N3 |
C4 |
C5 |
C6 |
180.3 |
180.0 |
| N3 |
C4 |
C5 |
N4 |
359.9 |
359.8 |
| C8 |
N3 |
C4 |
HN3 |
179.9 |
179.9 |
| C4 |
N3 |
C8 |
N4 |
0.1 |
0.3 |
| C4 |
N3 |
C8 |
C1' |
178.0 |
180.0 |
| C5 |
C6 |
C1 |
C7 |
179.6 |
180.0 |
| C1 |
C6 |
C5 |
HC6 |
179.9 |
180.0 |
| C6 |
C5 |
C4 |
N3 |
180.3 |
180.0 |
| C4 |
C5 |
C6 |
N4 |
179.5 |
179.7 |
| C6 |
C5 |
N4 |
C8 |
179.7 |
180.1 |
| N4 |
C5 |
C4 |
N3 |
359.9 |
359.8 |
| C4 |
C5 |
N4 |
C6 |
180.4 |
180.3 |
| N4 |
C5 |
C6 |
HC6 |
0.5 |
0.3 |
| N3 |
C8 |
N4 |
C5 |
359.9 |
359.6 |
| C5 |
N4 |
C8 |
C1' |
182.1 |
179.9 |
| HC6 |
C6 |
C1 |
C7 |
359.5 |
0.0 |
| C1 |
C6 |
HC6 |
C5 |
180.1 |
180.0 |
| HC6 |
C6 |
C5 |
N4 |
0.5 |
0.3 |
| C1 |
C7 |
N1 |
N2 |
180.0 |
180.0 |
| N1 |
C7 |
N2 |
HH21 |
180.1 |
360.0 |
| N1 |
C7 |
N2 |
HH22 |
358.3 |
180.0 |
| HH11 |
N1 |
C7 |
HH12 |
178.4 |
179.9 |
| C1 |
C7 |
N2 |
N1 |
180.0 |
180.0 |
| N2 |
C7 |
N1 |
HH11 |
178.3 |
180.0 |
| N2 |
C7 |
N1 |
HH12 |
359.9 |
0.0 |
| HH21 |
N2 |
C7 |
HH22 |
181.8 |
180.0 |
| HH11 |
N1 |
C7 |
N2 |
178.3 |
180.0 |
| C7 |
N1 |
HH11 |
HH12 |
181.4 |
180.1 |
| HH12 |
N1 |
C7 |
N2 |
359.9 |
0.0 |
| C7 |
N1 |
HH12 |
HH11 |
178.4 |
179.9 |
| C7 |
N2 |
HH21 |
HH22 |
178.3 |
180.0 |
| C7 |
N2 |
HH22 |
HH21 |
181.8 |
180.0 |
| C4 |
N3 |
C8 |
HN3 |
180.1 |
180.1 |
| C5 |
N4 |
C8 |
N3 |
359.9 |
359.6 |
| N4 |
C8 |
N3 |
C1' |
182.1 |
180.3 |
| N3 |
C8 |
C1' |
C2' |
189.9 |
220.3 |
| N3 |
C8 |
C1' |
C6' |
9.7 |
40.0 |
| C4 |
N3 |
HN3 |
C8 |
179.8 |
179.9 |
| HN3 |
N3 |
C8 |
N4 |
179.9 |
180.2 |
| HN3 |
N3 |
C8 |
C1' |
357.9 |
359.9 |
| N4 |
C8 |
N3 |
HN3 |
179.9 |
180.2 |
| N3 |
C8 |
N4 |
C1' |
177.8 |
179.7 |
| N4 |
C8 |
C1' |
C2' |
7.5 |
39.9 |
| N4 |
C8 |
C1' |
C6' |
187.3 |
219.7 |
| C1' |
C8 |
N3 |
HN3 |
357.9 |
359.9 |
| N3 |
C8 |
C1' |
N4 |
182.4 |
180.4 |
| C2' |
C1' |
C8 |
C6' |
180.2 |
180.3 |
| C8 |
C1' |
C2' |
C3' |
179.9 |
180.2 |
| C8 |
C1' |
C2' |
HC2' |
359.8 |
359.8 |
| C8 |
C1' |
C6' |
C5' |
180.5 |
180.0 |
| C8 |
C1' |
C6' |
O6' |
2.1 |
0.0 |
| C8 |
C1' |
C2' |
C6' |
179.8 |
179.7 |
| C2' |
C1' |
C6' |
C5' |
0.3 |
359.7 |
| C2' |
C1' |
C6' |
O6' |
181.9 |
179.7 |
| C3' |
C2' |
C1' |
HC2' |
180.1 |
180.4 |
| C1' |
C2' |
C3' |
CV' |
180.0 |
179.8 |
| C1' |
C2' |
C3' |
C4' |
359.8 |
359.5 |
| C8 |
C1' |
C6' |
C2' |
180.2 |
180.3 |
| C6' |
C1' |
C2' |
C3' |
0.0 |
0.5 |
| C6' |
C1' |
C2' |
HC2' |
180.0 |
180.1 |
| C4' |
C5' |
C6' |
C1' |
359.5 |
0.0 |
| C1' |
C6' |
C5' |
BR5' |
177.2 |
180.0 |
| C5' |
C6' |
C1' |
O6' |
178.5 |
180.0 |
| C3' |
C2' |
C1' |
C6' |
0.0 |
0.5 |
| C1' |
C2' |
C3' |
HC2' |
179.9 |
179.6 |
| CV' |
C3' |
C2' |
C4' |
180.2 |
180.2 |
| C2' |
C3' |
CV' |
H32' |
231.9 |
269.8 |
| C2' |
C3' |
CV' |
H33' |
352.2 |
29.7 |
| C2' |
C3' |
CV' |
H34' |
112.5 |
149.7 |
| C2' |
C3' |
C4' |
C5' |
0.0 |
0.3 |
| C2' |
C3' |
C4' |
HC4' |
179.5 |
180.3 |
| HC2' |
C2' |
C1' |
C6' |
180.0 |
180.1 |
| C1' |
C2' |
HC2' |
C3' |
180.1 |
180.4 |
| HC2' |
C2' |
C3' |
CV' |
0.1 |
0.2 |
| HC2' |
C2' |
C3' |
C4' |
179.9 |
179.9 |
| CV' |
C3' |
C2' |
HC2' |
0.1 |
0.2 |
| C2' |
C3' |
CV' |
C4' |
179.8 |
179.8 |
| CV' |
C3' |
C4' |
C5' |
179.8 |
180.0 |
| CV' |
C3' |
C4' |
HC4' |
359.3 |
0.0 |
| H32' |
CV' |
C3' |
H33' |
239.7 |
240.1 |
| H32' |
CV' |
C3' |
H34' |
119.3 |
120.1 |
| H33' |
CV' |
C3' |
H34' |
239.7 |
240.0 |
| C4' |
C3' |
C2' |
HC2' |
179.9 |
179.9 |
| C2' |
C3' |
C4' |
CV' |
180.2 |
180.2 |
| C4' |
C3' |
CV' |
H32' |
52.1 |
90.0 |
| C4' |
C3' |
CV' |
H33' |
172.4 |
210.0 |
| C4' |
C3' |
CV' |
H34' |
292.7 |
330.0 |
| C5' |
C4' |
C3' |
HC4' |
180.5 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
0.4 |
360.0 |
| C3' |
C4' |
C5' |
BR5' |
182.6 |
180.0 |
| H32' |
CV' |
C3' |
C4' |
52.1 |
90.0 |
| C3' |
CV' |
H32' |
H33' |
121.1 |
120.0 |
| C3' |
CV' |
H32' |
H34' |
240.9 |
240.0 |
| H33' |
CV' |
H32' |
H34' |
119.8 |
120.0 |
| H33' |
CV' |
C3' |
C4' |
172.4 |
210.0 |
| C3' |
CV' |
H33' |
H32' |
239.5 |
240.0 |
| C3' |
CV' |
H33' |
H34' |
120.0 |
120.0 |
| H32' |
CV' |
H33' |
H34' |
240.4 |
240.0 |
| H34' |
CV' |
C3' |
C4' |
292.7 |
330.0 |
| C3' |
CV' |
H34' |
H32' |
119.5 |
120.1 |
| C3' |
CV' |
H34' |
H33' |
239.1 |
240.0 |
| H32' |
CV' |
H34' |
H33' |
119.6 |
120.0 |
| C1' |
C6' |
C5' |
C4' |
359.5 |
0.0 |
| C3' |
C4' |
C5' |
HC4' |
179.5 |
180.0 |
| C6' |
C5' |
C4' |
BR5' |
177.8 |
180.0 |
| C4' |
C5' |
C6' |
O6' |
178.0 |
180.0 |
| C3' |
C4' |
HC4' |
C5' |
180.5 |
180.0 |
| HC4' |
C4' |
C5' |
C6' |
180.9 |
180.0 |
| HC4' |
C4' |
C5' |
BR5' |
3.1 |
360.0 |
| C1' |
C6' |
C5' |
O6' |
181.5 |
180.0 |
| C6' |
C5' |
C4' |
HC4' |
180.9 |
180.0 |
| C4' |
C5' |
C6' |
BR5' |
182.2 |
180.0 |
| BR5' |
C5' |
C4' |
HC4' |
3.1 |
360.0 |
| C4' |
C5' |
BR5' |
C6' |
177.8 |
180.0 |
| BR5' |
C5' |
C6' |
O6' |
355.7 |
0.0 |
| C1' |
C6' |
O6' |
C5' |
178.5 |
180.0 |
| O6' |
C6' |
C5' |
BR5' |
355.7 |
0.0 |