Atom Nomenclature for 32P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 32P

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
S1 S1
O1 O1
O2 O2
O3 O3
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
C12 C12
C13 C13
O4 O4
C14 C14
C15 C15
C16 C16
N1 N1
O5 O5
N2 N2
O6 O6
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
N3 N3
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
F1 F1
H1 H1
H2 H2
H3 H3
H4 H4
H6 H6
H71 1H7
H72 2H7
H9 H9
H11 H11
H13 H13
H151 1H15
H152 2H15
HN1 HN1
HN2 HN2
H17 H17
H181 1H18
H182 2H18
H183 3H18
H191 1H19
H192 2H19
H201 1H20
H202 2H20
H211 1H21
H212 2H21
H221 1H22
H222 2H22
HN31 1HN3
HN32 2HN3
H231 1H23
H232 2H23
H24 H24
H26 H26
H27 H27
H29 H29