Atom Nomenclature for 30N

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 30N

Atom Name (V3) Atom Name (V2)
N1A N1A
C2A C2A
N3A N3A
C4A C4A
C5A C5A
C6A C6A
N6A N6A
N7A N7A
C8A C8A
N9A N9A
C1B C1B
C2B C2B
O2B O2B
C3B C3B
O3B O3B
P3B P3B
O7A O7A
O8A O8A
O9A O9A
C4B C4B
O4B O4B
C5B C5B
O5B O5B
P1A P1A
O1A O1A
O2A O2A
O3A O3A
P2A P2A
O4A O4A
O5A O5A
O6A O6A
CBP CBP
CCP CCP
CDP CDP
CEP CEP
CAP CAP
OAP OAP
C9P C9P
O9P O9P
N8P N8P
C7P C7P
C6P C6P
C5P C5P
O5P O5P
N4P N4P
C3P C3P
C2P C2P
S1P S1P
O1P O1P
O2P O2P
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36